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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000276 | G protein-coupled receptor, rhodopsin-like | PRINTS | PR00237 | GPCRRHODOPSN | coord: 62..86
score: 23.44
coord: 176..197
score: 23.67
coord: 227..250
score: 19.93
coord: 95..116
score: 32.87
coord: 141..163
score: 29.43
coord: 287..311
score: 20.46
coord: 325..351
score: 26.65 |
| IPR000276 | G protein-coupled receptor, rhodopsin-like | PFAM | PF00001 | 7tm_1 | coord: 77..343
e-value: 4.0E-50
score: 170.2 |
| IPR000276 | G protein-coupled receptor, rhodopsin-like | PROSITE | PS00237 | G_PROTEIN_RECEP_F1_1 | coord: 147..163 |
| IPR001760 | Opsin | PRINTS | PR00238 | OPSIN | coord: 199..211
score: 33.77
coord: 83..95
score: 42.21
coord: 322..334
score: 37.65 |
| IPR000856 | Opsin RH3/RH4 | PRINTS | PR00577 | OPSINRH3RH4 | coord: 274..288
score: 72.5
coord: 351..369
score: 34.87
coord: 239..256
score: 38.19 |
| None | No IPR available | GENE3D | 1.20.1070.10 | | coord: 46..368
e-value: 9.4E-73
score: 244.2 |
| None | No IPR available | PANTHER | PTHR24240 | OPSIN | coord: 26..370 |
| None | No IPR available | PANTHER | PTHR24240:SF11 | OPSIN | coord: 26..370 |
| None | No IPR available | SUPERFAMILY | 81321 | Family A G protein-coupled receptor-like | coord: 38..363 |
| None | No IPR available | TMHMM | TMhelix | | coord: 177..199 |
| None | No IPR available | TMHMM | TMhelix | | coord: 62..84 |
| None | No IPR available | TMHMM | TMhelix | | coord: 295..314 |
| None | No IPR available | TMHMM | TMhelix | | coord: 97..119 |
| None | No IPR available | TMHMM | TMhelix | | coord: 134..156 |
| None | No IPR available | TMHMM | TMhelix | | coord: 224..246 |
| IPR027430 | Visual pigments (opsins) retinal binding site | PROSITE | PS00238 | OPSIN | coord: 327..343 |
| IPR017452 | GPCR, rhodopsin-like, 7TM | PROSITE | PS50262 | G_PROTEIN_RECEP_F1_2 | coord: 77..343
score: 37.624 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000010390 ID=EMLSAP00000010390|Name=EMLSAP00000010390|organism=Lepeophtheirus salmonis|type=polypeptide|length=380bp
MSHNNIQDGFHKPSAGLYMDTTYYNQYPPGMKXTDGIPEELREVIHAHWD
QYSPANPLIAHFFGIMFFFLWLMNFFGNGLVIFIFSKVKSLRTPTNMFVI
NLAISDLIMMTSMGPPVTINIFLQRYWAWGVFGCKLYGCVGAVCGVVSIL
TMVVIGYDRYNVIVKGFNGTKITAGKALIIIMSIWGYSIAISALALFDIW
GGYTVEGLLFTCSYDYLTDDANNVSYILFTCFFMYLLPMSLVFFFYSSIV
KAVWAHEMTLKQQAKKMNVESLRSNVDTHAESAEIRIAKVAVTNVSLWAG
IWSPYTIVVLMAVMGSKSSIXPLISQLPSFIAKTASCLNPMVYAMSHPKY
REALMREVPCLGIEEETPEEIRTTKEPVKA back to top
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