EMLSAP00000010390, EMLSAP00000010390 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000010390
Unique NameEMLSAP00000010390
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length380
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 62..86
score: 23.44
coord: 176..197
score: 23.67
coord: 227..250
score: 19.93
coord: 95..116
score: 32.87
coord: 141..163
score: 29.43
coord: 287..311
score: 20.46
coord: 325..351
score: 26.65
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 77..343
e-value: 4.0E-50
score: 170.2
IPR000276G protein-coupled receptor, rhodopsin-likePROSITEPS00237G_PROTEIN_RECEP_F1_1coord: 147..163
IPR001760OpsinPRINTSPR00238OPSINcoord: 199..211
score: 33.77
coord: 83..95
score: 42.21
coord: 322..334
score: 37.65
IPR000856Opsin RH3/RH4PRINTSPR00577OPSINRH3RH4coord: 274..288
score: 72.5
coord: 351..369
score: 34.87
coord: 239..256
score: 38.19
NoneNo IPR availableGENE3D1.20.1070.10coord: 46..368
e-value: 9.4E-73
score: 244.2
NoneNo IPR availablePANTHERPTHR24240OPSINcoord: 26..370
NoneNo IPR availablePANTHERPTHR24240:SF11OPSINcoord: 26..370
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 38..363
NoneNo IPR availableTMHMMTMhelixcoord: 177..199
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
NoneNo IPR availableTMHMMTMhelixcoord: 295..314
NoneNo IPR availableTMHMMTMhelixcoord: 97..119
NoneNo IPR availableTMHMMTMhelixcoord: 134..156
NoneNo IPR availableTMHMMTMhelixcoord: 224..246
IPR027430Visual pigments (opsins) retinal binding sitePROSITEPS00238OPSINcoord: 327..343
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 77..343
score: 37.624

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
KAAS/KEGG2014-05-09
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000010390 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000010390EMLSAT00000010390-706237Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000010390 ID=EMLSAP00000010390|Name=EMLSAP00000010390|organism=Lepeophtheirus salmonis|type=polypeptide|length=380bp
MSHNNIQDGFHKPSAGLYMDTTYYNQYPPGMKXTDGIPEELREVIHAHWD
QYSPANPLIAHFFGIMFFFLWLMNFFGNGLVIFIFSKVKSLRTPTNMFVI
NLAISDLIMMTSMGPPVTINIFLQRYWAWGVFGCKLYGCVGAVCGVVSIL
TMVVIGYDRYNVIVKGFNGTKITAGKALIIIMSIWGYSIAISALALFDIW
GGYTVEGLLFTCSYDYLTDDANNVSYILFTCFFMYLLPMSLVFFFYSSIV
KAVWAHEMTLKQQAKKMNVESLRSNVDTHAESAEIRIAKVAVTNVSLWAG
IWSPYTIVVLMAVMGSKSSIXPLISQLPSFIAKTASCLNPMVYAMSHPKY
REALMREVPCLGIEEETPEEIRTTKEPVKA
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