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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001723 | Steroid hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 578..593 score: 35.25 coord: 633..650 score: 35.19 coord: 503..519 score: 30.25 coord: 482..503 score: 28.28 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 277..285 score: 62.11 coord: 220..236 score: 58.62 coord: 236..251 score: 61.45 coord: 269..277 score: 67.83 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | ZnF_C4 | coord: 217..288 e-value: 1.1E-38 score: 144.5 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 219..286 e-value: 1.1E-30 score: 105.4 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 220..246 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 217..292 score: 19.197 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | SMART | SM00430 | HOLI | coord: 481..645 e-value: 1.3E-25 score: 101.1 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | PFAM | PF00104 | Hormone_recep | coord: 464..658 e-value: 2.9E-27 score: 94.9 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 455..674 e-value: 2.2E-57 score: 193.9 coord: 278..314 e-value: 2.2E-57 score: 193.9 coord: 386..387 e-value: 2.2E-57 score: 193.9 |
IPR008946 | Nuclear hormone receptor, ligand-binding | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 464..674 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 218..277 e-value: 1.1E-28 score: 98.8 |
IPR000936 | Alphavirus E2 glycoprotein | PFAM | PF00943 | Alpha_E2_glycop | coord: 250..363 e-value: 1.2E-4 score: 20.7 |
None | No IPR available | PANTHER | PTHR24083:SF25 | NUCLEAR HORMONE RECEPTOR HR78 | coord: 217..692 |
None | No IPR available | PANTHER | PTHR24083 | NUCLEAR HORMONE RECEPTOR | coord: 217..692 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 218..294 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000012486 ID=EMLSAP00000012486|Name=EMLSAP00000012486|organism=Lepeophtheirus salmonis|type=polypeptide|length=760bp MIAADSTVSGGPNNPGTSTPPAHFLLPPPRGLIVNPAAYLAASPFLYGNS ALSYAREWQAKLKELQDAKVVXATVAALNSSSQAAQEHLLSKXPSSPSCG NSSNTNSNNSGGSPPSASLFESLKETSIQKGRSSPKKSSPPLSFTTAASN SNNSNNILSSLNRKSTELMKMDSNGALNLASSASPSPTDSGGGNNLIMAG GGGXVGRNGGSTQAFGIEACVVCGDRASGRHYGAISCEGCKGFFKRSIRK QLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRIMKQIYESYLAPRV SAVQSERRPIVPANVSNAVTAALAENISISNAKNSSPVYHIYDSPTLLSR NSLGPSSDSILSSHDTNVKAASTIVLGSGGIGSGGIGDEDNTSTDAGSLN GDYSHLDASHVLAAREKSLISXAMDVMTKTICEDEEEEPNEDINNSSIDE SETIIQDSLVNFKLSTPSPTPFYLNVHFICETASRLLFLSVHWVRTIPCF GQLSYESQVGLVRNSWSDIFVLGMSQCSKSMNLQSILTAIVSHLQTSVSQ ERLSATRVRQVTSTICKVQEYVRTMSKMCITDHEYAYLKAISLFGADQVG ISSGKKIDKLRQKTVSELKEYCTLQDDENRFSNLLLRLSPLRSLQPDILE ELFFAGLIGNVQIDSVVPYILKMEASEYQSQFKWKLMNLETNHHPSWRII ILRLPLFLYKNEKNKTLIFIWFLVFFLRNEKIEDFFCITVHRSSKDFMLL NVIFLFFTNL back to top
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