tnf receptor-associated factor 3 isoform x3, maker-scaffold131_size323982-snap-gene-0.17 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of tnf receptor-associated factor 3 isoform x3 vs. L. salmonis genes
Match: EMLSAG00000008196 (supercontig:LSalAtl2s:LSalAtl2s494:238305:242533:1 gene:EMLSAG00000008196 transcript:EMLSAT00000008196 description:"snap_masked-LSalAtl2s494-processed-gene-2.3") HSP 1 Score: 49.6766 bits (117), Expect = 4.010e-7 Identity = 56/239 (23.43%), Postives = 98/239 (41.00%), Query Frame = 0 Query: 13 MRTWAIGRCLSSPYLTGATILVLTVLSVRHYSSMQENGDLLTRLETLQSQIKTDKF--------------NLQSLENSLTQKNTELDKMNHD------------------KTTFDEQIESRAEELRNKDTQILE--AEKAKVAAESQLGELQEQFRQCEE-----SKENAAENLNTSIVEKDQVIQDLKDRVAKLTDSQAGKPANKIAPFVEDRQLDPNLAGKLGDVDPSAVIVKNKAL 212 M GR + +PY A IL++ L+++++S+ LL ++ L+ ++K+ K NLQ+ + + DK+ D K++ DE E+L ++ ++ E ++ + E L E + C SKEN E T + + Q I +L + + G N D+Q P+ G+L D+DP AVIVK+K + Sbjct: 1 MLRGGAGRIIFTPYFLSANILIILFLTIKYWSASNYEFQLLNKVHILEIELKSCKTTLVNSEAEFKHKLENLQTCQTDFQALQNQFDKLTEDFKLKSLDYDRLRKKDDNNKSSLDELSRKCVEDL--EECRVFEDKCNQSLKSNEETLHEAKSALEDCSSFAKTVSKENQTE---TEMFK--QTINELNAELLQYKGHAKGSINNM------DKQHMPD--GELPDIDPEAVIVKSKPV 224 The following BLAST results are available for this feature:
BLAST of tnf receptor-associated factor 3 isoform x3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of tnf receptor-associated factor 3 isoform x3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of tnf receptor-associated factor 3 isoform x3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold131_size323982:10645..12607- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold131_size323982-snap-gene-0.17 ID=maker-scaffold131_size323982-snap-gene-0.17|Name=tnf receptor-associated factor 3 isoform x3|organism=Tigriopus kingsejongensis|type=gene|length=1963bp|location=Sequence derived from alignment at scaffold131_size323982:10645..12607- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'tnf receptor-associated factor 3 isoform x3' has the following synonyms
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