retinoid x receptor, maker-scaffold192_size271026-snap-gene-1.22 (gene) Tigriopus kingsejongensis

Overview


Name	retinoid x receptor
Unique Name	maker-scaffold192_size271026-snap-gene-1.22
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000001919 (supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5")

HSP 1 Score: 464.922 bits (1195), Expect = 3.890e-163
Identity = 256/451 (56.76%), Postives = 300/451 (66.52%), Query Frame = 0

Query:   14 VPPTPP-LAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTS----------------PAVH-------------YPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRG------------GHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISE---QGGAFSRQESDDLQAHMPGGFDGDQPN----KRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILEE 412
             PPTP  L    + PQSP++LKPD SLLL   S     P S                P VH             YPP   LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACREN+ C+IDKRQRNRCQYCRYMKCL TGM+REAVQEER+RG             +  +  +E VESST  G  GG+M I+RI+ AE + E       F   +++   +      D +       K++++ QL+EWAK +PHF++LK+ED++ LIR GWNELL+AG AF S+   DGIL  +   + RENAH AGVG IFDRVLVEL+ KMKEM+MDKAELGCLRAIILFNPDAKGL      +VE+ REKVYATLEEY R+ HENEPSRFAKLLLRLPALRSIGLKC+EHLFFYKL+ D   +GN           LE FI+ +LEE
Sbjct:    4 TPPTPNHLLNPGYMPQSPVDLKPDASLLLTTLSNPQSTPPSSAYPVGESMYGSQAPHPGVHGHARSTQSPPNNTYPPNHPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHRGSNGPNHNNNNNNNNNNSRNSEEVESSTSGG--GGDMPIERIIEAEDVGEMKQDTSEFLLLDNNSSMSGGGSIGDMEIQRFGLAKKRIIHQLIEWAKLVPHFSELKVEDQVTLIRGGWNELLVAGLAFXSIKLNDGILLGNGTIVTRENAHEAGVGHIFDRVLVELIAKMKEMQMDKAELGCLRAIILFNPDAKGLSD--VTKVENLREKVYATLEEYTRSVHENEPSRFAKLLLRLPALRSIGLKCLEHLFFYKLVGDYLNDGN----------PLEKFIQSLLEE 440

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000009969 (supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-1 gene:EMLSAG00000009969 transcript:EMLSAT00000009969 description:"maker-LSalAtl2s651-augustus-gene-2.5")

HSP 1 Score: 221.476 bits (563), Expect = 1.565e-67
Identity = 125/356 (35.11%), Postives = 195/356 (54.78%), Query Frame = 0

Query:   35 PDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGA--EAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILW------ADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            PD  ++ N+ S   P P+S        S ++  C +CGD++SGKHYG ++CEGCK FFKR VR+ L + CR  K+C +D+  RN+CQ+CR+ KCL  GM++EAVQ+ R           + +    +TG+  L   +++  + A  + + Q G      S+++      G D       ++L   +EWA++IP F +L+I D++ L+R  W+EL +   +   M      L       A      R  A +  +     RV  E V K+K +++D AE  CL+AI+LF+ D  GL  D  L +E  +EK    L++YC+ +H  +PSRF KLLLRLP+LR++    +E LFF +L+
Sbjct:   47 PDHHIVNNSSSLTAPSPSSGTN-----SSTEILCVVCGDKSSGKHYGQFTCEGCKSFFKRCVRRSLTFQCRSKKSCPVDQHHRNQCQHCRFKKCLNMGMKKEAVQKGRTTTTSAPIFNYSNDLFSPNTGSSYLSTYISL-LLRAEPYTTSQYGQLQMAASNNII-----GIDNICEFAARLLFSAIEWARNIPGFPELQITDQVGLLRMVWSELFVLNASQCHMPLHVAPLLVAXGLHASPLAADRXVAFMDHI-----RVFQEQVEKLKALQVDAAEXACLKAIVLFSTDPPGLT-DITL-IEQLQEKSQCALDDYCKIHHPTKPSRFGKLLLRLPSLRTVSSAVIEQLFFIRLV 384

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13")

HSP 1 Score: 221.09 bits (562), Expect = 6.764e-67
Identity = 119/340 (35.00%), Postives = 191/340 (56.18%), Query Frame = 0

Query:   59 PPLS-GSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQ-------GGAFSRQ----ESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRE------NAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYK 380
            PPL+  +   C++CGDRA+GKHYG  SC+GCKGFF+R+VRKE VY CR+N+ACI++K +RN C+YCR   C+  GM++ AVQ ER+R   +   +A+ + S+        E+ +  ++ A+ + ++       GG  +      E + L        +    + ++ L  LVEWAKHI  F +L ++D+++L+RA   E L+ G A RSMN    +L  +   I ++       +  A V  I  RV+ ELV   K + +D AEL CL+AI+ F+P  +GL      Q++  R +++  LE+Y          RF ++LL + +L++I  + +E + F K
Sbjct:  141 PPLAPNNIQNCAVCGDRATGKHYGAASCDGCKGFFRRSVRKERVYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDRISCRKKTSAKDMNSA-------NELTVTALLNADKVGQKSLLNSIVGGNINTNNFITEENVLANKQLASIEDIGHSMKEQLIVLVEWAKHIKAFCELSVDDQVRLLRAHSGEHLLMGVAKRSMNLNGILLLGNDMIIVKDERKWNSESQDAAVRSIGVRVMNELVDTFKRINIDDAELACLKAIVFFDPHVRGLHD--VEQIKKLRSQIHTNLEDYINDRLYESRGRFGEILLSIQSLQAITWQMIEQISFAK 471

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000009941 (supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-1 gene:EMLSAG00000009941 transcript:EMLSAT00000009941 description:"maker-LSalAtl2s649-snap-gene-4.11")

HSP 1 Score: 201.445 bits (511), Expect = 3.567e-61
Identity = 131/381 (34.38%), Postives = 184/381 (48.29%), Query Frame = 0

Query:   20 LAGLAHPPQSPLELKPDVSLLLNAH------SPALPRPTSPAV-HYPP--LSGSKHF-CSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQE----SDDLQAHMPG----GFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            +  L  P  SP  L    + L++ H      SPA+      ++ H  P  LS S    C +CGD++SGKHYG ++CEGCK FFKR+VR+ L Y CR +K C +D+  RN+CQ+CR  KC   GMRREAVQ        +G     P     G  GLG   + D +    ++S       R E    S   Q  MP     G +       ++L   VEW + IP F +L++ D++ L+R  W+EL                                           E V K+K + +D AE  C++AI+LF  DA GL       +E  +EK    LEEYCR+ + N+P+RF KLLLRLP+LR++    +E LFF +L+
Sbjct:   25 ITSLNPPSASPDSLVGSTTHLIHHHISSDSISPAISSGIVASIEHAKPSELSESSDINCVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYQCRGSKNCPVDQHHRNQCQHCRLKKCFKMGMRREAVQ--------RGRVPPTP----QGVFGLG--FSSDPLSGTTYLSSYISMLLRAEPYPTSRYGQMPMPTNGMIGIENICEFAARLLFSAVEWTRSIPGFPELQVTDQVALLRLVWSELF------------------------------------------EQVEKLKGLHVDSAEYVCMKAIVLFTTDAPGLCDMQV--IEQLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSTVIEQLFFVRLV 347

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000009940 (supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-1 gene:EMLSAG00000009940 transcript:EMLSAT00000009940 description:"maker-LSalAtl2s649-augustus-gene-4.7")

HSP 1 Score: 203.371 bits (516), Expect = 1.699e-58
Identity = 114/334 (34.13%), Postives = 176/334 (52.69%), Query Frame = 0

Query:   68 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGA--------------EAAEPVESSTGAGGLGGEMAIDRIVAAEHISE--QGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKR---ENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            C +CGD++SGKHYG ++CEGCK FFKR+VR+ L Y CR +++C ID+  RN+CQ+CR  KC+  GMR+EAVQ  R     +                       +   +G        +    + +IS   +   +S      LQ     G D       ++L   +EWA++IP F +L + D++ L+R  W+EL +   +  +M      L A +         +  +A +  I  R+  E V K+K + +D AE  C++A++LF  DA GL +     +E  +EK    LE+YCR ++ N+PSRF KLLLRLP+LR++    +E LFF +L+
Sbjct:  434 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRALTYQCRGSRSCPIDQHHRNQCQHCRLKKCIKMGMRKEAVQRGRIPASQQNVLPFGFNGDRSSNVGSGGGSGGTGGSSGSSSSSNNSNSNYLSSYISMLLRAEPYSTTRYGQLQMSNMVGIDNICEFAARLLFSAIEWARNIPGFPELPVTDQVALLRLVWSELFVLNASQCNMPLHIAPLLAAAGLHANPMPADKVVAFMDQI--RIFQEQVEKLKGLHVDPAEYSCMKAVVLFTTDACGLSESN--MIEQLQEKSQCALEDYCRNHYPNQPSRFGKLLLRLPSLRTVSSGVIEQLFFVRLV 763

HSP 2 Score: 121.709 bits (304), Expect = 3.815e-30
Identity = 66/187 (35.29%), Postives = 101/187 (54.01%), Query Frame = 0

Query:  202 GFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQF------IKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            G D       ++L   +EWA++IP F DL I D++ L+R  W+EL +   +  +M      L A +          R  A++  +     R+  E V K+K + +D AE  C++AI+LF  DA GL       +E  +EK    LEEYCRT + N+P+RF +LLLR P+LR++    +E LFF +L+
Sbjct:  156 GIDNICEFAARLLFSAIEWARNIPGFPDLPITDQVALLRLVWSELFVLNASQCNMPIHIAPLLAAAGLHASPMAADRVVAYMDHI-----RIFXEQVEKLKSIHVDSAEYSCMKAIVLFTTDAPGLTDVSV--IEQLQEKSQCALEEYCRTQYPNQPTRFGRLLLRFPSLRTVSSTVIEQLFFIRLV 335

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000004451 (supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1 gene:EMLSAG00000004451 transcript:EMLSAT00000004451 description:"snap_masked-LSalAtl2s231-processed-gene-9.18")

HSP 1 Score: 159.458 bits (402), Expect = 5.408e-44
Identity = 102/375 (27.20%), Postives = 177/375 (47.20%), Query Frame = 0

Query:   32 ELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVES----STGAGGL----------------------GGEMAIDRIVAAEHISEQGGAF-------SRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNP-----DAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSI 368
            +++ D  L + +HS       +  +    L  S   C +CGD+ SG HYG++SCE CKGFFKRTV+ +  Y C     C +    R +C  CR+ KCL  GM+ EA++E+R RGG    + +  + +    ST +  +                      G  + +  I++ EH+     +        S   +D  Q               K L +LV W K +P F ++ ++D+I L+   W ELL+  C ++S++    I  +  + +  E+A   GV +  +++L     +++ +K+D  E   L+ I+L        DA GL++    QV   +E+V   L+ Y   ++ + P++F +LLLR+P L+ +
Sbjct:  121 KIEEDPQLTIESHSSYSTHLNTSGISRQQLINSP--CPVCGDKISGFHYGIFSCESCKGFFKRTVQNKKNYVCLRGSQCPVTISTRKKCPACRFDKCLNIGMKLEAIREDRTRGGRSTYQCSYNLPTTGVCSTNSTTIPTIKRESRGDDHNTETKVNQSSGIPVLLHEIMSVEHLWFWSTSMPSLSLNNSSSNTDTSQESPSNPVQTLTLLADKRLYKLVRWCKSLPLFKNILVDDQITLLINAWCELLVFSCCYKSVDSPGFIRLSQDKSLNLESAKSLGVNECIEKML-NFSDQLRRLKVDHYEYVSLKVILLLTSAPLYVDATGLKE--VDQVRESQEQVVQALQSYTNFHYPSMPNKFGELLLRMPELQRV 490

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1")

HSP 1 Score: 144.436 bits (363), Expect = 7.874e-38
Identity = 99/335 (29.55%), Postives = 162/335 (48.36%), Query Frame = 0

Query:   67 FCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKML------------------QQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFN-PDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSR--FAKLLLRLPALRSIGLKCVEHLFFYK 380
             C++CGD A+ +HYGV +CEGCKGFFKRTV+K   Y C  +K C +DKR+RNRCQ+CR+ KCLA GM +E V+ +  + G +G   ++P   +         + I  +V A HI           + D    +    + ++ +K  ML                  + +  + + IP  ++L + DR  L +    EL +   A+RS    D   + +   +          GD  + +  E    +  M++D +   CL  +IL N  D +    DP  +VES   K+  +L+++   N E +       ++L RLPALRS+ ++ ++ +FF K
Sbjct:  408 LCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLK-GRRGRLPSKPKSPTESPPSPPVSL-ITALVRA-HIDTS----PDMNNLDYSQFVETSIEDERDSKENMLANEAIKIGQFYHVLTSSIEVIRNFCERIPGISELSLNDRDLLFQTSCLELFVLRLAYRSNPDSDRYTFCNGVVLHVSQCEQT-FGDWLNGI-NEFARGLHSMELDISAFSCLCGLILVNGKDERHGLSDPK-KVESIENKIINSLKDHVTYNPEAQKKEHYMTRILDRLPALRSLSMQGLQRIFFLK 732

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0")

HSP 1 Score: 135.576 bits (340), Expect = 2.381e-35
Identity = 121/425 (28.47%), Postives = 172/425 (40.47%), Query Frame = 0

Query:    7 HSLMEGGVPPTPPLA-GLAHP--PQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEER--------------------------NRGGHKGAEAAEPVE-----SSTGAGGLGGEMAIDRIVAAE---------------HISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNH-ENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKL 381
            + L   G  P+ PL  GL HP  P +P       S ++          + PA         +  C +CGDRASG HY   +CEGCKGFF+R++ K   Y C+ N  C ID   R +CQ CR  KC ATGMR E V  ER                          N  G  G+ + +        SST       E  I+R+V  +               H+       S  ESD L  HM              +Q +VE++KH+P F +L  +D+I L++   +E+++   A R   + D I++A +    +EN   AG+G+         + +MKE K                            +VE  +E     L+ Y   N  +N+   FAKLL  L  LRS+G+   E  F  KL
Sbjct:  118 YYLNNSGESPSSPLENGLRHPNAPLTPTGAVQQYSQMVENERKKKGSSSRPA---------EELCLVCGDRASGYHYNALACEGCKGFFRRSITKNSNYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQKRQAKAAAAAAAXXDTTVDPKSNNNGKNGSISIDMASFPKRLSSTKPLKPEEEELINRLVYFQEEYEHPSEADLNRVYHVPMHSTNSSESESDRLFRHMTEM-------TILTVQLIVEFSKHLPGFQNLCRDDQINLLKGCSSEVMMLRGARRYDAESDSIVYATNYPFTKENYAKAGLGNDELFRFCRAMSRMKEPK----------------------------RVEKIQEIYVDALQAYVMANRKKNQMVTFAKLLYVLTELRSLGINNSELCFSLKL 498

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10")

HSP 1 Score: 128.257 bits (321), Expect = 6.768e-33
Identity = 74/225 (32.89%), Postives = 112/225 (49.78%), Query Frame = 0

Query:   63 GSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRV 287
            G +  C +CGD ASG HYGV SCE CK FFKRT++  + Y    +  C I+KR+R  CQ CR+ KCL  GM +E V+ +R RGG +       +ESS        +   D  +       +  AF       L  +             + L   +EWAK IP F++L I D++KL+++ W+E+L+    +RS+     I   ++  +    A L G+ + F +V
Sbjct:  266 GQRRTCLVCGDIASGFHYGVSSCEACKAFFKRTIQGNIEYTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGRQKYRRM--IESSPYIQPPPKKTLEDNKLLQVLRHCEPEAFLVNMDMTLPNYKIRTISTLSDFYNRELIGTIEWAKQIPGFSNLTINDQMKLLQSSWSEILVLSLVYRSLPYNGKISLTNNFSLDESQARLCGLSEFFFQV 488

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6")

HSP 1 Score: 118.242 bits (295), Expect = 3.535e-29
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 0

Query:   63 GSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGG 146
            G +  C +CGD+ SG HYG+ +CE CKGFFKRTV+ + VY C  +++C+IDK QR RC YCR+ KCL  GM+ EAV+ +R RGG
Sbjct:  181 GMEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGG 264

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|81888393|sp|Q5BJR8.1|RXRG_RAT (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 399.438 bits (1025), Expect = 1.450e-135
Identity = 213/378 (56.35%), Postives = 263/378 (69.58%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSL-LLNAHSPA---LPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQES-DDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PP   LA PP   L + P   L ++N+ S +    P P  P +   +YP   P S  KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   +    AE   +STG   +  E  ++  +A E  +E  G  S + S +D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   79 PPSGALAAPPGINLVVPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAEC--ASTGHEDMPVERILEAELAVEPKTESYGDMSVESSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLFNPDAKGL-SNPS-EVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 445

[Close]

BLAST of retinoid x receptor vs. SwissProt
Match: gi|74902124|sp|Q5I7G2.1|RXR_LYMST (RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X receptor; Short=LymRXR)

HSP 1 Score: 397.897 bits (1021), Expect = 1.935e-135
Identity = 216/387 (55.81%), Postives = 261/387 (67.44%), Query Frame = 0

Query:   25 HPPQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILE 411
            H P S +   P + L     SP  P P SP + +  L  +KH C+ICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACR++K C+IDKRQRNRCQYCRYMKCL+ GM+REAVQEER R   KG      VES++GA     +M +++I+ AE   +           D   ++    D       K L  LVEWAK IPHFT+L +ED++ L+RAGWNELLIAG + RS+  +DGIL A    + R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLRA++LFNPDAKGL      +VE  REKVYA+LEEY +T +  EP RFAKLLLRLPALRSIGLKC+EHLFF+KLI D               Q ++ F+ E+LE
Sbjct:   81 HSPTSSMGSPPMLCL-----SPTGPSP-SPGLPHSSLH-TKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQRVKEKGDGE---VESTSGA---NNDMPVEQILEAELAVDPKIDTYIDAQKDPVTNICQAAD-------KQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAVVLFNPDAKGLTA--VQEVEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD---------------QPIDTFLMEMLE 430

[Close]

BLAST of retinoid x receptor vs. SwissProt
Match: gi|167016572|sp|Q0GFF6.2|RXRG_PIG (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 396.741 bits (1018), Expect = 1.587e-134
Identity = 210/379 (55.41%), Postives = 260/379 (68.60%), Query Frame = 0

Query:   13 GVPPTPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQES-DDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            G    PP   L  PP S L +   VS+  +      P P  P +   +YP   P S  KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   +    AE   +S+G   +  E  ++  +A E  +E  G  + + S +D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   82 GTLAAPPGINLVAPPSSQLNVVNSVSISEDIK----PLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAEC--ASSGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL-SNPS-EVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 445

[Close]

BLAST of retinoid x receptor vs. SwissProt
Match: gi|119367365|sp|Q0VC20.1|RXRG_BOVIN (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 396.356 bits (1017), Expect = 1.827e-134
Identity = 209/378 (55.29%), Postives = 256/378 (67.72%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISE-----QGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PP   L  PP S L +   VS+  +      P P  P +   +YP   P S  KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   +    AE   S         +M ++RI+ AE   E      G   +   ++D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   87 PPGINLVAPPSSQLNVVNSVSISEDIK----PLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECANSG------HEDMPVERILEAELAVEPKTESYGDMNTENSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL-SNPS-EVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 445

[Close]

BLAST of retinoid x receptor vs. SwissProt
Match: gi|1350914|sp|P28705.2|RXRG_MOUSE (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 396.356 bits (1017), Expect = 2.347e-134
Identity = 212/382 (55.50%), Postives = 259/382 (67.80%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSL-LLNAHSPA---LPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISE-----QGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PP   LA PP   L   P   L ++N+ S +    P P  P +   +YP   P S  KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   +    AE   SS        +M ++RI+ AE   E      G       ++D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   79 PPSGALAAPPGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSS------HEDMPVERILEAELAVEPKTESYGDMNVENSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL-SNPS-EVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 445

[Close]

BLAST of retinoid x receptor vs. SwissProt
Match: gi|75062013|sp|Q5REL6.1|RXRG_PONAB (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 395.201 bits (1014), Expect = 6.383e-134
Identity = 211/378 (55.82%), Postives = 262/378 (69.31%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSL-LLNAHSPA---LPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQES-DDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PP   LA PP   L   P   L ++N+ S +    P P  P +   +YP   P S  KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   +    AE   +S+G   +  E  ++  +A E  +E  G  + + S +D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   79 PPSGALAAPPGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAEC--ASSGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL-SNPS-EVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 445

[Close]

BLAST of retinoid x receptor vs. SwissProt
Match: gi|1350913|sp|P48443.1|RXRG_HUMAN (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 394.43 bits (1012), Expect = 1.186e-133
Identity = 210/378 (55.56%), Postives = 262/378 (69.31%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSL-LLNAHSPA---LPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQES-DDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PP   LA PP   L   P   L ++N+ S +    P P  P +   +YP   P S  KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   +    AE   +++G   +  E  ++  +A E  +E  G  + + S +D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   79 PPSGALAAPPGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAEC--ATSGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL-SNPS-EVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 445

[Close]

BLAST of retinoid x receptor vs. SwissProt
Match: gi|75017953|sp|Q8T5C6.1|RXR_BIOGL (RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like protein; AltName: Full=Retinoid X receptor; Short=BgRXR)

HSP 1 Score: 392.119 bits (1006), Expect = 4.049e-133
Identity = 214/412 (51.94%), Postives = 264/412 (64.08%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLS------------------GSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILE 411
            P +A    P   P ++          HSP +  PTS ++  PP+                    +KH C+ICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACR++K C+IDKRQRNRCQYCRYMKCL+ GM+REAVQEER R   KG      VES++GA     +M +++I+ AE   +           D   ++    D       K L  LVEWAK IPHFT+L +ED++ L+RAGWNELLIAG + RS+  +DGIL A    + R +AH AGVG IFDRVL ELV KM++MKMDK ELGCLRA++LFNPDAKGL      +VE  REKVYA+LEEY ++ +  EP RFAKLLLRLPALRSIGLKC+EHLFF+KLI D               Q ++ F+ E+LE
Sbjct:   60 PSMASSTQPSPGPQQM----------HSPGMHSPTS-SMGSPPMLCLSPSGPSPSPGLPHSSLHTKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQRVKEKGDGE---VESTSGA---NNDMPVEQILEAELAVDPKIDTYIDAQKDPVTNICQAAD-------KQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTA--VQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD---------------QPIDTFLMEMLE 430

[Close]

BLAST of retinoid x receptor vs. SwissProt
Match: gi|133700|sp|P28701.1|RXRG_CHICK (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 392.889 bits (1008), Expect = 5.373e-133
Identity = 208/378 (55.03%), Postives = 263/378 (69.58%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAE-HISEQGGAFS----RQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            P +  + H PQ      P+V   +++     P P  P +   +YP   P S +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCLA GM+REAVQEER     +G+      E+ + +GG   +M ++RI+ AE  +  +  A+S       ++D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL   P+ +VES REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   93 PGMNFVTHSPQ------PNVLNNVSSSEDIKPLPGLPGIGNMNYPSTSPGSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER-----QGSRERSENEAESTSGG-SEDMPVERILEAELAVEPKTEAYSDVNTESSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL-SSPS-EVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 449

[Close]

BLAST of retinoid x receptor vs. SwissProt
Match: gi|1710810|sp|P51129.1|RXRG_XENLA (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 392.119 bits (1006), Expect = 1.200e-132
Identity = 197/330 (59.70%), Postives = 239/330 (72.42%), Query Frame = 0

Query:   60 PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAE-----HISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            P + +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+LVY CR++K C+IDKRQRNRCQYCRY KCLA GM+REAVQEER R   K    AE   S++       EM ++RI+ AE      I   G A     ++D   ++    D       K L  LVEWAK IP+F+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M MDK+ELGCLRAI+LFNPDAKGL    A +VE+ REKVYATLE Y +  + ++P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:  138 PGALTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSREKSDTEAESTSSTS------EEMPVERILEAELAVDPKIEAFGDAGLPNSTNDPVTNICHAAD-------KQLFTLVEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLFNPDAKGLSN--AAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 452

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|1005940533|ref|XP_015788497.1| (PREDICTED: retinoic acid receptor RXR-alpha-B-like [Tetranychus urticae])

HSP 1 Score: 405.986 bits (1042), Expect = 3.602e-136
Identity = 208/350 (59.43%), Postives = 245/350 (70.00%), Query Frame = 0

Query:   35 PDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            P  S+ L +   A P PT       PLSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE K CIIDKRQRNRCQYCRY KCL  GM+REAVQEER R   K     E   +S        +M I+RI+ AE  SE      R ++ DL   +P  +        + L QL+EWAKHIPHF DL IED+I L+++GWNELLIAG +  SMN +DGI+ A    + R +AH AGVG IFDRVL ELV KM+E+KMDK ELGCLR+I+LFNP+AK L+     Q+E  REKVYA  E+YC++ +  +  RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   81 PSNSISLPSTPVASPSPTPRYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREEKNCIIDKRQRNRCQYCRYQKCLIMGMKREAVQEERQRNKDKNDNEVESTSTS------HNDMPIERILEAELRSE-----PRNDNLDLNDSIPNIWQAAD----RQLYQLIEWAKHIPHFCDLPIEDQIVLLKSGWNELLIAGFSHASMNVKDGIVLATGLVVHRNSAHQAGVGAIFDRVLTELVAKMRELKMDKTELGCLRSIVLFNPEAKHLKS--ISQIELLREKVYAVFEDYCKSTYPEQAGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 413

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|1059423579|ref|XP_017784458.1| (PREDICTED: retinoic acid receptor RXR-alpha-B isoform X2 [Nicrophorus vespilloides])

HSP 1 Score: 404.445 bits (1038), Expect = 6.894e-136
Identity = 222/414 (53.62%), Postives = 266/414 (64.25%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNA---------HSP-----ALPRPTSPAVH----------YPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRS--MNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILE 411
            PQSPL++KPD + L+++         HSP     A     SP             YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE+K C IDKRQRNRCQYCRY KCLA GM+REAVQEER R   +     E   +      +  EM I+RI+ AE  +E     S+ E  +L+  +            K L QLVEWAKHIPHFT L + D++ L+RAGWNELLIA  + R+   + ++GI+ A    I R +AH  GVG IFDRVL ELV KM+EMKMDK E+GCLR IILFN D +GL+     +VE  REKVYA LEEY RT H NEP RFAKLLLRLPALRSIGLKC+EHLFF++LI++                 ++ F+KE+LE
Sbjct:   24 PQSPLDMKPDTATLISSGQFSPQGGPHSPGSFSMAHSNILSPGGGGGGAKGVGSPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDTSEVESTST------INSEMPIERILEAERRTE----CSKSEKPELENAVTNICQATN----KQLYQLVEWAKHIPHFTGLPVMDQVLLLRAGWNELLIAAFSHRTTEFDAKEGIVLATGLTIHRNSAHQIGVGGIFDRVLTELVSKMREMKMDKTEIGCLRCIILFNSDVRGLKS--INEVEILREKVYAVLEEYTRTKHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIRN---------------VPIDTFLKEMLE 406

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|805758577|ref|XP_012149394.1| (PREDICTED: retinoic acid receptor RXR-alpha-B isoform X4 [Megachile rotundata])

HSP 1 Score: 403.675 bits (1036), Expect = 1.248e-135
Identity = 217/387 (56.07%), Postives = 257/387 (66.41%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNA--HSPALPRP--------------TSPA------VHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAA----EHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PQSPL++KPD + L+NA   SP+ P                TSP+        YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE K+CIIDKRQRNRCQYCRY KCLA GM+REAVQEER R   +     E   S      L  +M I+RI+ A    E+  EQ G +    S    A              K L QLV WAKHIPHFT L +ED++ L+RAGWNELLIA  + RS++ +DGI+ A    + R +A  AGVG IFDRVL ELV KM+EMKMD+ ELGCLR+IILFNP+ +GL+     +V   REK+YA LE YCR    ++P RFAKLLLRLPA+RSIGLKC+EHLFF+K+I D
Sbjct:   22 PQSPLDMKPDTASLINAGNFSPSGPNSPGSFNAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSS------LHSDMPIERILEAEKRVEYKMEQQGNYENAVSHICNA------------TNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKS--IQEVTLLREKIYAALEGYCRVAWPDDPGRFAKLLLRLPAIRSIGLKCLEHLFFFKMIGD 388

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|1325306801|ref|XP_023335012.1| (retinoic acid receptor RXR-like [Eurytemora affinis])

HSP 1 Score: 402.905 bits (1034), Expect = 1.374e-135
Identity = 208/369 (56.37%), Postives = 256/369 (69.38%), Query Frame = 0

Query:   51 PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAE-----HISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILE 411
            PT+P   YPP   LS +KH CSICGDRASGKHYGV+SCEGCKGFFKRTVRKEL YACRE K C +DKRQRNRCQYCRYMKCL+ GM+REAVQEER+ G     ++ + ++  +     G E+ I+ I+ AE     H +E   + S Q   D+   M G +   +      LQ LVEWA+HIPHF  L I+D++ L+R GWNEL+I G A RS+   +GI+ AD  F  RE AH AGVG ++DRVLVELVGKM EMKMD++ELGCLR I+LFNPDAKGL +    +VE  RE+ YATLEEY R    N+  RFAKLLLRLPALRSIGL+C EHLFF+K+I D+          D+ + +LE  +KE+LE
Sbjct:   32 PTTPQGGYPPGHPLSNAKHMCSICGDRASGKHYGVFSCEGCKGFFKRTVRKELSYACREEKNCTVDKRQRNRCQYCRYMKCLSMGMKREAVQEERSLGKGGKDDSGDTMDGVS----YGNEIPIENILEAENRCDKHQAEILASLSLQ---DIDTSMEGKY---KLAANIQLQSLVEWARHIPHFNGLSIDDQVALLRNGWNELMIIGFAHRSVGNSEGIMLADGIFATRETAHEAGVGMVYDRVLVELVGKMTEMKMDRSELGCLRTIVLFNPDAKGLTEIG--KVEQIRERAYATLEEYTRNMSPNDNGRFAKLLLRLPALRSIGLRCDEHLFFFKMISDNQGE------FDIRSSTLEFTLKELLE 382

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|1269859024|gb|ATO74595.1| (ultra spiracle [Tetranychus cinnabarinus])

HSP 1 Score: 404.06 bits (1037), Expect = 2.149e-135
Identity = 207/350 (59.14%), Postives = 244/350 (69.71%), Query Frame = 0

Query:   35 PDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            P  S+ L +   A P PT       PLSGSKH CSICGDRASGKHYG YSCEGCKGFFKRTVRK+L YACRE K CIIDKRQRNRCQYCRY KCL  GM+REAVQEER R   K     E   +S        +M I+RI+ AE  SE      R ++ DL   +P  +        + L QL+EWAKHIPHF DL IED+I L+++GWNELLIAG + RSMN +DGI+ A    + R +AH AGVG IFDRVL ELV KM+E+KMDK ELGCLR+I+ FNP+AK L+     Q+E  REKVYA  E+YC++ +  +  RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   81 PSNSISLPSTPVASPSPTPRYPPNHPLSGSKHLCSICGDRASGKHYGAYSCEGCKGFFKRTVRKDLTYACREEKNCIIDKRQRNRCQYCRYQKCLIMGMKREAVQEERQRNKDKNDNEVESTSTS------HNDMPIERILEAELRSE-----PRNDNLDLNDSIPNIWQAAD----RQLYQLIEWAKHIPHFCDLPIEDQIVLLKSGWNELLIAGFSHRSMNVKDGIVLATGLVVHRNSAHQAGVGAIFDRVLTELVAKMRELKMDKTELGCLRSIVPFNPEAKHLKS--ISQIELLREKVYAVFEDYCKSTYPEQAGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 413

The following BLAST results are available for this feature:

BLAST of retinoid x receptor vs. L. salmonis genes
BLAST of retinoid x receptor vs. SwissProt
BLAST of retinoid x receptor vs. nr

BLAST of retinoid x receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000001919	3.890e-163	56.76	supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1...	[more]
EMLSAG00000009969	1.565e-67	35.11	supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-...	[more]
EMLSAG00000007361	6.764e-67	35.00	supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1...	[more]
EMLSAG00000009941	3.567e-61	34.38	supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-...	[more]
EMLSAG00000009940	1.699e-58	34.13	supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-...	[more]
EMLSAG00000004451	5.408e-44	27.20	supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1...	[more]
EMLSAG00000013004	7.874e-38	29.55	supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 ...	[more]
EMLSAG00000005090	2.381e-35	28.47	supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-...	[more]
EMLSAG00000008071	6.768e-33	32.89	supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 ...	[more]
EMLSAG00000008902	3.535e-29	55.95	supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1...	[more]

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BLAST of retinoid x receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|81888393\|sp\|Q5BJR8.1\|RXRG_RAT	1.450e-135	56.35	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|74902124\|sp\|Q5I7G2.1\|RXR_LYMST	1.935e-135	55.81	RecName: Full=Retinoic acid receptor RXR; AltName:...	[more]
gi\|167016572\|sp\|Q0GFF6.2\|RXRG_PIG	1.587e-134	55.41	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|119367365\|sp\|Q0VC20.1\|RXRG_BOVIN	1.827e-134	55.29	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|1350914\|sp\|P28705.2\|RXRG_MOUSE	2.347e-134	55.50	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|75062013\|sp\|Q5REL6.1\|RXRG_PONAB	6.383e-134	55.82	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|1350913\|sp\|P48443.1\|RXRG_HUMAN	1.186e-133	55.56	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|75017953\|sp\|Q8T5C6.1\|RXR_BIOGL	4.049e-133	51.94	RecName: Full=Retinoic acid receptor RXR; AltName:...	[more]
gi\|133700\|sp\|P28701.1\|RXRG_CHICK	5.373e-133	55.03	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|1710810\|sp\|P51129.1\|RXRG_XENLA	1.200e-132	59.70	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]

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BLAST of retinoid x receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1005940533\|ref\|XP_015788497.1\|	3.602e-136	59.43	PREDICTED: retinoic acid receptor RXR-alpha-B-like...	[more]
gi\|1059423579\|ref\|XP_017784458.1\|	6.894e-136	53.62	PREDICTED: retinoic acid receptor RXR-alpha-B isof...	[more]
gi\|805758577\|ref\|XP_012149394.1\|	1.248e-135	56.07	PREDICTED: retinoic acid receptor RXR-alpha-B isof...	[more]
gi\|1325306801\|ref\|XP_023335012.1\|	1.374e-135	56.37	retinoic acid receptor RXR-like [Eurytemora affini...	[more]
gi\|1269859024\|gb\|ATO74595.1\|	2.149e-135	59.14	ultra spiracle [Tetranychus cinnabarinus]	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold192_size271026	supercontig	scaffold192_size271026:116203..123255 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold192_size271026-snap-gene-1.22-mRNA-1	maker-scaffold192_size271026-snap-gene-1.22-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold192_size271026:116203..123255-

gene from alignment at scaffold192_size271026:116203..123255-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold192_size271026-snap-gene-1.22 ID=maker-scaffold192_size271026-snap-gene-1.22|Name=retinoid x receptor|organism=Tigriopus kingsejongensis|type=gene|length=7053bp|location=Sequence derived from alignment at scaffold192_size271026:116203..123255- (Tigriopus kingsejongensis)
GCCCGGGCCAGCCTGTGGCCTCCAGCGCCATCGATGGAGTCATCCCGATT
TGGCTCTTTATCCGACGCCCGATTTGGCCAAACTGTCGAGCTCAGTCCGA
GATCCTCACCCATTGCCTACACACATCGCCTGTGGGTTGTGAGCCTAGAC
ACTAGGTTGTGAGTGCGCCCGTGAATTGGTAGTGCCCGTGTCCGGCTGGC
TGGCCCGCACCTCCCAGCTCCCCTCCGCCCGTGCGAGTCCCGGGTCATGA
GCCTGGCGTCTTGAGTCGCGCCCCATGGCCATGGATCCCGCCCACAGCCT
CATGGAGGGCGGTGTCCCGCCCACCCCGCCCCTGGCTGGCCTAGCCCACC
CGCCTCAGTCGCCGCTCGAGCTCAAGCCCGACGTGTCCCTGCTGCTCAAC
GCCCATTCACCCGCACTCCCGCGCCCCACCTCGCCCGCAGTCCACTATCC
GCCGCTGAGCGGGTCCAAGCACTTCTGCAGCATCTGCGGCGACCGCGCCT
CCGGCAAGCACTACGGCGTGTACTCGTGCGAGGGCTGCAAGGGCTTCTTC
AAGCGCACCGTCCGCAAAGAGCTGGTCTACGCCTGCCGCGAGAACAAGGC
TTGCATCATCGACAAGCGCCAGCGCAACCGCTGCCAGTATTGCCGCTACA
TGAAGTGCCTGGCCACGGGCATGCGGCGCGAGGCCGTGCAGGAGGAGCGC
AATCGCGGCGGGCACAAGGGGGCCGAGGCGGCTGAGCCGGTCGAGAGCTC
GACGGGGGCCGGTGGGCTGGGGGGCGAGATGGCTATCGACCGCATCGTGG
CCGCCGAGCACATCTCGGAGCAGGGCGGCGCCTTCAGCCGGCAGGAGAGC
GACGATCTCCAGGCTCACATGCCCGGTGGCTTCGACGGGGACCAGCCCAA
CAAGCGCAAGATGCTCCAGCAACTGGTCGAGTGGGCCAAGCACATTCCCC
ACTTCACCGACCTCAAGATCGAAGATCGGGTAAGGCTCCTACCATGGTCT
CGGAGACCCTTTTTGGATAGGGTAGGGGCTGGCGGTCGTGAGCCGAAGGG
GTTTCGGAGGCTAGCGCTGCGGCTAGGGTCACTCGAGCGTAATTGACTTC
GATGAGCGCTGAGGCTAGCTTAATTCGAGCGTAGTTGACCTAGATTGGCG
CTGCGGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCT
AGCTTAATTCGAGCGTAATTGACTTCGATGAGCGCTGCGGCTAGCTCAAT
TCGAGCGTAATTGACTTCGATGAGCGCTGCGGCTAGCTCAATTCGAGCGT
AGTTGACTTCGATGAGCGCTGCGGCTAGCTCAATTTGAGGGTAGTTGACC
TAGATTGGCGCTGCGGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGG
CGCTGCGGCTAGCTCAATTCGAGCGTAGTTGACTTCGATGAGCGCTGCGG
CTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCTAGCTTA
ATTCGAGCGTAATTGACTTCGATGAGCGCTGCGGCTAGCTCAATTCGAGC
GTAGTTGACCTAGATTGGCGCTGCGGCTAGCTCAATTCGAGCGTAGTTGA
CCTAGATTGGCGCTGCGGCTAGCTCAATTCGAGCGTAATTGACTTCGATG
AGCGCTGCGGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGC
GGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCTAGCT
TAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCTAGCTTAAATTGA
CATACTGTTAGGGTTTGGTTACGTCGGGTCAGGTTAGGTCAGGTTGGATG
TTAGAACTGTTTGGGCGCAGGACCGCCAGCCCCTACCTTTACCCCAATTT
TCCGTGGGCCACGGACTTGCCCGGCCCCATGGGCGTTGGACTGGCGCATA
GGGTCACATTGGCCCCCGTCAGCCTGGGCCCACGGTATTGAGACGTCCCA
AGCTGGAATTGAGATAGATGCGGGGGTCTGGTGGCTGGAAATAACCCGCT
CGCCAAGGATGAAAATGATTTTCCGGATGTCAGTTCATCCATAATCAGTC
TGTTTCGAGCCATTCGGCTACTGCTTAACCCACCTCCAGGTCTTCGCTGG
CGTAAATTATGAGAGTCAGCTGTTAGCCAACACATAAATGTGTTTCAGAA
AAACATCGGATACAGTTAGGCTGTACTACACTTACGTGCCACCTCTCGTC
TACTGAGACACACGACCACACCAACCCCTTGAGATCTTGACCATGGCGTG
GCATTACAGCCCAAGGTCCATTCGAAAATCCTAAGGTGCTTCAGCCTAGA
GCAGCGACCTGGGTCGTCACCAATGAAAAAGAGATTTTTTTCACTCGTCA
TGACCACATCTGTTGGTCAAAGCCTCCCAAGTTTCTCTGTACGAACTCGT
TGAGCATGAGCAACACCTAGCTCATCCAGACTTGGGCTCCTGAAGTGTGG
GGCTGCCCATGATGAGGGCAGACTTACGTCTGCATCCTCCCACCTCGATC
CAGTTACATTGTTTAGCCCTTTTGGGTTTCCACTCGGGTTAAGTGGCCAT
GAGGTGAGAAAGTGTTGGCTCGGATCTTTGGCATCGCTGCTTTCATGACG
TGCGCGAGCCTCTGAGGAATTTGGGAAACCCACGAAACGGTGACGTCATT
CCTGGGATGAAAGTAGTCATTGGATCTCCTGGTATACTCTTCCGACTAAT
TGAACCTTCGGCACTAGAGGCTATAATGTGTCTCCCTTTCCAGATTAAGC
TGATTCGGGCTGGCTGGAACGAACTCTTGATCGCTGGCTGTGCCTTCAGG
TCCATGAATCAAGAAGATGGCATCCTCTGGGCGGACTCTCAGTTCATCAA
GCGCGAAAACGCCCATCTGGCCGGAGTTGGCGACATCTTTGACCGAGTTC
TCGTCGAGTTGGTGGGCAAGATGAAAGAAATGAAGATGGTATGGCCCTTT
TGACTTGACTACAACCTTAAAAACCTTATGTGGTATGACTCCTTTCAAGC
CGGCTTTTGTTTTTTTTGTCGAAATCAATACCAACGAGATCGATCTGAGA
CTGAATCCGATACGGAGCATTCAGTCCGAAAAAAGCGGTTTGGCTCAATT
CGAATGGCATTAATCAAGACGGCCTTCGCCCTGTCAATCATTTGCAAATA
TCGAGAGAAGTGTCAGCGGGAACCACATGCTACACCCGACCAGGATACTG
GGCCCAATTACTAAATGCAGGTGGAAATAACTCGGAAAGTATTCCGCCAA
ATGAACGCCCTCCCAGGTTGAAACAAATGGCGGCCTAACTAAAAGCGACG
ACTAGAAAGGCAAGACATCATTGGCATGGTCATTCAAAACGAGGCGTATT
TGTTGCCAATACTTGAAACAGCTATCGATCTTTGGAACTTCCGGGTTTGC
AAACTAGATTTATACTATATACTGTTGTTTAGCGAGGTTTGAGAGACGGC
CAGTGTCCCAAGGTATGGATTTCCGCACACCAGGATGACTAACTGACTTC
GAGGTTGCGTGTTTGGAGGGTCAAGTTGGACCTCCAAATCACAAATAAAT
CCCAGATAAAGCGAGAGACGGGTCTAGTTTATTTGGTTGGTTAAGTACGG
ATGACAACAGAACCCCGTTCTCCGCCTTACCCCACCAACCTCGCCAGGGT
CAATATCCTGTCCACTAAACCGGATCTGGAAAGGACGAGCAGCGGGAAAT
ACAAATCCCCGGTCGCCACACGTGAATGTCACTCCATTGGTAAGCTCCCA
AACCAAAGAGACTTTGTAGCCTATTTAGTTGCCAGAGGAGTAGCATGGCA
AGTATGTGTCTACTTCGAGTAAGTACGCGTACCAGTCTCGTTGGTTTGGG
CGTTGACTAGTGAAGGGACACAAAATCAGTGATTCATCCTGGTGTCGTGA
AATCCATGCCCAAGGTCGCAAATTGATATTTTAGCCTATCACTTTTCCTA
TGGTATTCTACAATGTCTTTTAGGACGGTCGAATTGCCAGAGGTGTGGGC
TCTTTTGTAATAAATCTGACCTGGAGAAAGTCGAACTTTGGAGGAAAGTA
AATTCATAAATAGTATTCACATGATGAGGCAAGCAGCGTAGCTTAATGGT
AGAGTGGCACAATCGGTCATCTATCATTGCGTTATCCGAGGGTCGTTCGT
TCGATCCCCGGGCTGGCCAAGCTCCGGCATCTAGTGGTGTTCACTCACAG
CTATTGTTGGCTTCCCTGGTGGGATTAAAGTGGGCGGACCTGTGGTCATT
CCTCGAGGGTAAGATAATAATTCATGATAAATTTGACCGCCAGGCTGACT
ATGTCTCCTCGGAGATTTCCCTAGCTGGGCAGAAATGCCCATTAGTATTC
ACATAGTACAAAACAGCCTGCATATTGCATTGCTACCAAACTTTAGAGAA
TGCAATGATCGACAATGTTCCCTACGTATATCGTAGATCTACTTGTGAAT
TTGTAATTCAACATTTTGCCTTGTTGGGATCCTACAATTTCATTCATCTG
TGTAAGAAATTCACTTTTTGCCTAGTGTCCACCTCGACTAGAAAGCCGCT
TGTCTCATTGCTTGTGGCTCTGTATACGTACACTGTACAAGTTCCATTAG
GTCCAGCAACGCTTACTGCATCTACGATGTTTGCAAAGATTCATATGTCA
AGGGAGTCGACATACATGGTAAAGTGACATACTGGAGCGACACTCTTGAA
CCTGGTTCTGGTTTTAGTCAAACAAGCCCGAGAGCATAACCTCTGGAATT
GATAGAATTGCCTACAAAACAGCCTGCATCTGGCAGTTTGCCATTCTACC
ATGTGTATATTTTGGTTCACATTTCATCCGGATTCCATGCTTCATAGTTG
CGAACAAATATTCTCATCATATGTAGATTTTCACAATACCAAAATGCTCG
AAGCCTGCGCTTGGTTTGGGGAAGGATGGTTTGATTGATCACATCAAGCA
TTAGTTGGATTCAAAAGGTTTTGCGCCAGTAATCTCCTCAGGAGCCAATC
AGCCCTAGCGGTATGGTAGCGTGGCTTTTTTTGTTTCTTTGTTTGGAACG
CCCCGGCCATTTCTGCCCAACTAAGGAAATCTCCGAGGAGACATAGTCAG
CCTGGTGGACAAATTTATCATGAATTATCACCTTACCCTCGAGGAATGAC
CACAGGTACGCCCACTTTAATCCCGACAGGGAAGCCAACAATAGCTGTGA
TTTAACACCACTACAGGATGTAGTTGCCGGAATTTGGCCAGCCCGGGGAT
CGAACGAACGACCCTCGGATAATGCAATGATAGATGACTGATTGACAATC
AGTCATGGAATGATCTGGGAGGTTGCCCTCTTTACTAAGTAATCGTTCCG
CTGATATCGAGTGAGCAGATTATTCCTCCCACGTCGACACTCTGTTCTTG
CTTGCGCTTCCATGATGAAGCATCTTGTTGCCCGTTGGCAGATACCTTTT
AAGTGATAAATACATCTGGAATAACCCAATCGAACACGACGGAATACACT
TATTCCAAATCTATCATCGAAGGTCGTGGGTTCGATCCACGTGCTGGCTG
AGTTTCAGCCGCGGGTGGTGATAAATCGAAGCTTTTAAAGGACTTAAGTG
GGCGAATTGAATTAGTGAAGGAGGCGTTTCTGTGGTCATGTCTGGAGGTT
AAGGTAATAATTCATGATCAATTTGTTTTGCAAGGCTGGGCTGCATTTCA
ACTATTATTAGCCAAAATGTGGAGAAAAAGCCGTGGGCCTTTCGGGATAA
CTCTCGCCCAAATTGTATTTGGATACGACCAATTAGAAAAGGCATTCTGA
GCAAAAACTGTTGGCCTTAATTGGTTCTCTGAGTGAAATTTGTAGGCATG
GAGCATAATTTATTCTGTGTCAAGGCAATCAAGATGAACTGACTTTTGCT
CAAAATTGTCCGACATTTCGTTAAAGGGATCAGTGTCATAGTGGATATGT
CATACAGTTGTAGATATGTCATAGTGGAAGGGATAGCGTCTCAGTGGACC
AGTTACAGGAATTAATCATTTTTCACAACCGACCAAATATTGCAATGCAT
CTGAGAATCAGTCACCAAATATCGTTGGGTCTAAATCTCGGAGGCGGATG
CTTCGGCCACCACCGAGTTCTTGGGTGCACCACTCCTCATTTGACCGACA
GTCCCTGAACCGAGCTTATTCTGAAGTTTCGTGTTTTCTTTCCAGGATAA
GGCCGAGTTGGGATGTCTGCGTGCAATCATTCTCTTTAATCCCGACGCCA
AGGGCTTGGAGCAGGATCCGGCTCTTCAAGTGGAGTCGTTCCGCGAGAAG
GTCTACGCCACTCTGGAAGAGTACTGCCGCACCAACCACGAGAACGAGCC
CAGTCGCTTCGCCAAGCTCCTGCTCCGATTGCCGGCCTTGCGGTCCATCG
GCTTGAAGTGTGTGGAGCACTTGTTCTTCTACAAGCTCATCAAGGACGAT
GGACCCAATGGCAACGGGGCGGACGTGAACGACGTGGCCGCTCAGAGTCT
GGAACTGTTCATCAAAGAGATCCTCGAGGAGTGAAGTCACAGTGAGCGCG
CAAGTGCCGAAACTTTCATCGCGCAACCTCGAAAGATAGCGAGCGCCTTC
CCGACTTGAGTGCGAGATCAAAGTGAGTGGTGAGAGGGGATGAGCCCAGA
CTCACTTGTGAGCGTGGCAAAGTGCATTTATGAAATGTAAGGGGGTTGTT
TTGTGATCTCTGCCGACTGTACAATACTGATTTACGACACAGTGAGTGGT
GTCCTTGGATGCTCTCACCATCATTACTTAACCACCTTGATTGGGTTGTA
GATGGATCACATTTGCGTGGGCGCTTGGAGTATATATTTTCAAAATGTAA
GCCAATATCAGAGTATATAATTGATGCGATGGAAGATTTATATCCCGTAG
TACCGTCCGAAGGTACCCCTCCGTCACTCTAATTGTTATAACAAATGAAT
ACATACACGCAAGAGATGGATTAATACATAAGATGTGTTTTAATTTATTT
TTT

Synonyms

The feature 'retinoid x receptor' has the following synonyms


Synonym
Tk07205

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