corepressor interacting with rbpj 1, maker-scaffold282_size228295-snap-gene-1.23 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of corepressor interacting with rbpj 1 vs. L. salmonis genes
Match: EMLSAG00000004455 (supercontig:LSalAtl2s:LSalAtl2s231:965916:966836:-1 gene:EMLSAG00000004455 transcript:EMLSAT00000004455 description:"augustus_masked-LSalAtl2s231-processed-gene-9.8") HSP 1 Score: 328.946 bits (842), Expect = 8.211e-114 Identity = 150/198 (75.76%), Postives = 177/198 (89.39%), Query Frame = 0 Query: 1 MGKGFNNYMCKKFFHPASKDNLKRVWMAQQKTDAEQKKQDDLKQQYEREQELYNNRALLSKDSKEKLEVNFLYEPPPGARKEDREREDGE-ESGFKFEWQRKWGTAPRESWAKGDESIRDQPFGIQVRNVRCVKCHKYGHINTDKECPMYGKALDSEAPADRIDQQRLLEEMKEDGMKMRWSAWDIDDPRSSSKYQML 197 MGKG+NNYMCKKFFHPAS+DNLKRVWMA+Q+T+AE+KKQDDL+QQYEREQELYNN+ALLSK+SKEKL +NF+YEPPPGA++ D++ +D + E +KFEWQ KWG+APRES+ KGDESI DQPFGI VRNVRCVKCHKYGHINTDKECP+YGKALD+EAP IDQ++LL+EMK+DGMKMRWSAWDI SS Y M+ Sbjct: 1 MGKGYNNYMCKKFFHPASRDNLKRVWMAEQRTEAEKKKQDDLRQQYEREQELYNNKALLSKESKEKLGLNFMYEPPPGAKRADKKDDDQDGEPQYKFEWQAKWGSAPRESYCKGDESIMDQPFGILVRNVRCVKCHKYGHINTDKECPLYGKALDAEAPVGSIDQKKLLQEMKDDGMKMRWSAWDI----KSSNYNMV 194
BLAST of corepressor interacting with rbpj 1 vs. SwissProt
Match: gi|82080931|sp|Q5ZI03.1|CIR1_CHICK (RecName: Full=Corepressor interacting with RBPJ 1; AltName: Full=CBF1-interacting corepressor) HSP 1 Score: 213.772 bits (543), Expect = 2.605e-65 Identity = 112/246 (45.53%), Postives = 160/246 (65.04%), Query Frame = 0 Query: 1 MGKGFNNYMCKKFFHPASKDNLKRVWMAQQKTDAEQKKQDDLKQQYEREQELYNNRALLSKDSKEKLEVNFLYEPPPGARKEDREREDGEESGFKFEWQRKWGTAPRESWAKGDESIRDQPFGIQVRNVRCVKCHKYGHINTDKECPMYG------KALDSEAPADRIDQQRLLEEMKEDGMKMRWSAWDIDDPRSSSKYQMLEDPQARARQARADKLESEMEQKRRMIQSLSKDEKRKLLKKLER 240 MGK F N+MCKK FHPASK N+K+VWMA+QK ++KKQ++L QQY +EQE Y+NR LL D + K +NF+YE PPGA+KE+ + ++GE + +KFEWQ+ APRE +AK D +IRDQPFGIQVRNVRC+KCHK+GH+NTD+ECP++G ++ S+ + L+ EM+ G ++ + + DP + D + E+E ++SLS +K+KLL+KL+R Sbjct: 1 MGKSFANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNR-LLMGDERVKNGLNFMYEAPPGAKKEEAKEQEGE-TEYKFEWQK---VAPREKYAKDDMNIRDQPFGIQVRNVRCIKCHKWGHVNTDRECPLFGLSGINASSVSSDGSGPSMHPSELIAEMRNSGFALKQNVL--------GRNLTANDPSQEFVASEGDD-DPEVE----FLKSLSTKQKQKLLRKLDR 228
BLAST of corepressor interacting with rbpj 1 vs. SwissProt
Match: gi|81883502|sp|Q5U2T8.1|CIR1_RAT (RecName: Full=Corepressor interacting with RBPJ 1; AltName: Full=CBF1-interacting corepressor) HSP 1 Score: 190.66 bits (483), Expect = 1.907e-56 Identity = 109/249 (43.78%), Postives = 158/249 (63.45%), Query Frame = 0 Query: 1 MGKGFNNYMCKKFFHPASKDNLKRVWMAQQKTDAEQKKQDDLKQQYEREQELYNNRALLSKDSKEKLEVNFLYEPPPGARKEDREREDGEESGFK-FEWQRKWGTAPRESWAKGDESIRDQPFGIQVRNVRCVKCHKYGHINTDKECPMYG------KALDSEAPADRIDQQRLLEEMKEDGMKMRWSAWDIDDPRSSSKYQMLEDPQARARQARADKLESEMEQ--KRRMIQSLSKDEKRKLLKKLER 240 MGK F N+MCKK FHPASK N+K+VWMA+QK ++KKQ++L QQY +EQE Y+NR LL D + K +NF+YE PPG +KE++E+E+ E FEWQ+ APRE +AK D +IRDQPFGIQVRNVRC+KCHK+GH+NTD+ECP++G ++ ++ + L+ EM+ G ++ + + DP D + S+ E+ + ++SL+ +K+KLL+KL+R Sbjct: 1 MGKSFANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNR-LLMGDERVKNGLNFMYEAPPGVKKENKEKEETEGETEYKFEWQK---GAPREKYAKDDMNIRDQPFGIQVRNVRCIKCHKWGHVNTDRECPLFGLSGINASSVPTDGSGPSMHPSELIAEMRNSGFALKRNVL--------GRNLTANDPS-------QDYVASDGEEDPEVEFLKSLTTKQKQKLLRKLDR 230
BLAST of corepressor interacting with rbpj 1 vs. SwissProt
Match: gi|269849550|sp|Q9DA19.2|CIR1_MOUSE (RecName: Full=Corepressor interacting with RBPJ 1; AltName: Full=CBF1-interacting corepressor) HSP 1 Score: 190.274 bits (482), Expect = 2.211e-56 Identity = 109/249 (43.78%), Postives = 158/249 (63.45%), Query Frame = 0 Query: 1 MGKGFNNYMCKKFFHPASKDNLKRVWMAQQKTDAEQKKQDDLKQQYEREQELYNNRALLSKDSKEKLEVNFLYEPPPGARKEDREREDGEESGFK-FEWQRKWGTAPRESWAKGDESIRDQPFGIQVRNVRCVKCHKYGHINTDKECPMYG------KALDSEAPADRIDQQRLLEEMKEDGMKMRWSAWDIDDPRSSSKYQMLEDPQARARQARADKLESEMEQ--KRRMIQSLSKDEKRKLLKKLER 240 MGK F N+MCKK FHPASK N+K+VWMA+QK ++KKQ++L QQY +EQE Y+NR LL D + K +NF+YE PPG +KE++E+E+ E FEWQ+ APRE +AK D +IRDQPFGIQVRNVRC+KCHK+GH+NTD+ECP++G ++ ++ + L+ EM+ G ++ + + DP D + S+ E+ + ++SL+ +K+KLL+KL+R Sbjct: 1 MGKSFANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNR-LLMGDERVKNGLNFMYEAPPGVKKENKEKEETEGETEYKFEWQK---GAPREKYAKDDMNIRDQPFGIQVRNVRCIKCHKWGHVNTDRECPLFGLSGINASSVPTDGSGPSMHPSELIAEMRNSGFALKRNVL--------GRNLTANDPS-------QDYVASDCEEDPEVEFLKSLTTKQKQKLLRKLDR 230
BLAST of corepressor interacting with rbpj 1 vs. SwissProt
Match: gi|74727790|sp|Q86X95.1|CIR1_HUMAN (RecName: Full=Corepressor interacting with RBPJ 1; AltName: Full=CBF1-interacting corepressor; AltName: Full=Recepin) HSP 1 Score: 189.119 bits (479), Expect = 6.965e-56 Identity = 96/186 (51.61%), Postives = 132/186 (70.97%), Query Frame = 0 Query: 1 MGKGFNNYMCKKFFHPASKDNLKRVWMAQQKTDAEQKKQDDLKQQYEREQELYNNRALLSKDSKEKLEVNFLYEPPPGARKEDREREDGEESGFK-FEWQRKWGTAPRESWAKGDESIRDQPFGIQVRNVRCVKCHKYGHINTDKECPMYG------KALDSEAPADRIDQQRLLEEMKEDGMKMR 179 MGK F N+MCKK FHPASK N+K+VWMA+QK ++KKQ++L QQY +EQE Y+NR LL D + K +NF+YE PPGA+KE++E+E+ E FEWQ+ APRE +AK D +IRDQPFGIQVRNVRC+KCHK+GH+NTD+ECP++G ++ ++ + L+ EM+ G ++ Sbjct: 1 MGKSFANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNR-LLMGDERVKNGLNFMYEAPPGAKKENKEKEETEGETEYKFEWQK---GAPREKYAKDDMNIRDQPFGIQVRNVRCIKCHKWGHVNTDRECPLFGLSGINASSVPTDGSGPSMHPSELIAEMRNSGFALK 182
BLAST of corepressor interacting with rbpj 1 vs. SwissProt
Match: gi|75248513|sp|Q8VZ67.1|Y4919_ARATH (RecName: Full=Uncharacterized zinc finger CCHC domain-containing protein At4g19190) HSP 1 Score: 74.7146 bits (182), Expect = 5.594e-14 Identity = 50/199 (25.13%), Postives = 92/199 (46.23%), Query Frame = 0 Query: 6 NNYMCKKFFHPASKDNLKRVWMAQQKTDAEQKKQDDLKQQYEREQELYNNRALLSKDSKEKLE----VNFLYEPPPGARKED---REREDGEESGFKFEWQ-----RKWGTAPRESWAKGDES------------------------------------IRDQPFGIQVRNVRCVKCHKYGHINTDKECPMYGKALDSE 156 ++++ +K +HP S N +R W+A+Q ++ +++ +++ +EQE + AL+SK +EK+E V+F+Y PPG E E +D + G Q G+ P ES G+ + R +PF ++VRNV+C++C +GH + D++CP+ + +E Sbjct: 40 HSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNE 238
BLAST of corepressor interacting with rbpj 1 vs. nr
Match: gi|1068423598|ref|XP_018056300.1| (PREDICTED: corepressor interacting with RBPJ 1, partial [Atta colombica]) HSP 1 Score: 264.618 bits (675), Expect = 1.264e-83 Identity = 124/190 (65.26%), Postives = 159/190 (83.68%), Query Frame = 0 Query: 1 MGKGFNNYMCKKFFHPASKDNLKRVWMAQQKTDAEQKKQDDLKQQYEREQELYNNRALLSKDSKEKLEVNFLYEPPPGARKEDREREDGEESGFKFEWQRKWGTAPRESWAKGDESIRDQPFGIQVRNVRCVKCHKYGHINTDKECPMYGKAL------DSEAPADRIDQQRLLEEMKEDGMKMRWSAWD 184 MGKGFNNYMCKKFFHPAS+DNLKRVWMA+Q+ +A +KKQ++L+ QYE+EQ+L+NN+ALLSK+SK+KL VNF+YEPPPGA+KE RE+ED E +KFEWQRK+ APRES+ KGD IRDQPFGIQVRNVRC+KCHK+GHINTDKECP+Y +A+ +S+ P+ D L+++M+EDG+ ++ SA D Sbjct: 1 MGKGFNNYMCKKFFHPASRDNLKRVWMAEQQAEAYKKKQEELRVQYEKEQDLHNNKALLSKESKDKLSVNFMYEPPPGAKKE-REKEDNEPE-YKFEWQRKYN-APRESYCKGDSEIRDQPFGIQVRNVRCIKCHKWGHINTDKECPLYSQAMSVVMANNSQTPS-APDTMTLVQQMREDGLALKKSALD 186
BLAST of corepressor interacting with rbpj 1 vs. nr
Match: gi|1070190476|ref|XP_018352080.1| (PREDICTED: corepressor interacting with RBPJ 1 [Trachymyrmex septentrionalis]) HSP 1 Score: 265.003 bits (676), Expect = 1.278e-83 Identity = 124/190 (65.26%), Postives = 159/190 (83.68%), Query Frame = 0 Query: 1 MGKGFNNYMCKKFFHPASKDNLKRVWMAQQKTDAEQKKQDDLKQQYEREQELYNNRALLSKDSKEKLEVNFLYEPPPGARKEDREREDGEESGFKFEWQRKWGTAPRESWAKGDESIRDQPFGIQVRNVRCVKCHKYGHINTDKECPMYGKAL------DSEAPADRIDQQRLLEEMKEDGMKMRWSAWD 184 MGKGFNNYMCKKFFHPAS+DNLKRVWMA+Q+ +A +KKQ++L+ QYE+EQ+L+NN+ALLSK+SK+KL VNF+YEPPPGA+KE RE+ED E +KFEWQRK+ APRES+ KGD IRDQPFGIQVRNVRC+KCHK+GHINTDKECP+Y +A+ +S+ P+ D L+++M+EDG+ ++ SA D Sbjct: 1 MGKGFNNYMCKKFFHPASRDNLKRVWMAEQQAEAYKKKQEELRVQYEKEQDLHNNKALLSKESKDKLSVNFMYEPPPGAKKE-REKEDNEPE-YKFEWQRKYN-APRESYCKGDSEIRDQPFGIQVRNVRCIKCHKWGHINTDKECPLYSQAMSVVMANNSQTPS-APDTMTLVQQMREDGLALKKSALD 186
BLAST of corepressor interacting with rbpj 1 vs. nr
Match: gi|1022769941|gb|KZS14377.1| (putative Corepressor interacting with RBPJ 1 [Daphnia magna]) HSP 1 Score: 265.388 bits (677), Expect = 1.635e-83 Identity = 126/184 (68.48%), Postives = 153/184 (83.15%), Query Frame = 0 Query: 1 MGKGFNNYMCKKFFHPASKDNLKRVWMAQQKTDAEQKKQDDLKQQYEREQELYNNRALLSKDSKEKLEVNFLYEPPPGARKEDREREDGEESGFKFEWQRKWGTAPRESWAKGDESIRDQPFGIQVRNVRCVKCHKYGHINTDKECPMYGKALDS--EAPADRIDQQRLLEEMKEDGMKMRWSA 182 MGKGFNNYMCKKFFHP S+DNLKRVWMAQQKTDAE+KKQ++LK QYE+EQ+LY N++L+SK+SKEKL VNFLYEPPPG +KE REREDGE FKFEWQRK+ APRE + + +E IRDQPFGI VRNVRC+KCHK+GH+NTD+ECP++ KA D+ EA A ++L+ +MKE G+ M SA Sbjct: 1 MGKGFNNYMCKKFFHPGSRDNLKRVWMAQQKTDAEKKKQEELKAQYEKEQDLYVNKSLVSKESKEKLSVNFLYEPPPGMKKE-REREDGEPE-FKFEWQRKYN-APREDYCRDNEDIRDQPFGIAVRNVRCIKCHKWGHVNTDRECPLFNKARDAFDEAVAGPDPSEKLMSDMKETGLAMTKSA 181
BLAST of corepressor interacting with rbpj 1 vs. nr
Match: gi|769849535|ref|XP_011636159.1| (PREDICTED: corepressor interacting with RBPJ 1 [Pogonomyrmex barbatus]) HSP 1 Score: 264.233 bits (674), Expect = 1.800e-83 Identity = 124/190 (65.26%), Postives = 159/190 (83.68%), Query Frame = 0 Query: 1 MGKGFNNYMCKKFFHPASKDNLKRVWMAQQKTDAEQKKQDDLKQQYEREQELYNNRALLSKDSKEKLEVNFLYEPPPGARKEDREREDGEESGFKFEWQRKWGTAPRESWAKGDESIRDQPFGIQVRNVRCVKCHKYGHINTDKECPMYGKAL------DSEAPADRIDQQRLLEEMKEDGMKMRWSAWD 184 MGKGFNNYMCKKFFHPAS+DNLKRVWMA+Q+ +A +KKQ++L+ QYE+EQ+L+NN+ALLSK+SK+KL VNF+YEPPPGA+KE RE+ED E +KFEWQRK+ APRES+ KGD IRDQPFGIQVRNVRC+KCHK+GHINTDKECP+Y +A+ +S+ P+ D L+++M+EDG+ ++ SA D Sbjct: 1 MGKGFNNYMCKKFFHPASRDNLKRVWMAEQQAEAYKKKQEELRVQYEKEQDLHNNKALLSKESKDKLSVNFMYEPPPGAKKE-REKEDNEPE-YKFEWQRKY-NAPRESYCKGDSEIRDQPFGIQVRNVRCIKCHKWGHINTDKECPLYSQAMSVVMANNSQTPS-APDTMTLVQQMREDGLALKKSALD 186
BLAST of corepressor interacting with rbpj 1 vs. nr
Match: gi|1035621730|ref|XP_016918797.1| (PREDICTED: corepressor interacting with RBPJ 1 [Apis cerana] >gi|1241829759|gb|PBC26210.1| Corepressor interacting with RBPJ [Apis cerana cerana]) HSP 1 Score: 265.774 bits (678), Expect = 1.824e-83 Identity = 123/189 (65.08%), Postives = 158/189 (83.60%), Query Frame = 0 Query: 1 MGKGFNNYMCKKFFHPASKDNLKRVWMAQQKTDAEQKKQDDLKQQYEREQELYNNRALLSKDSKEKLEVNFLYEPPPGARKEDREREDGEESGFKFEWQRKWGTAPRESWAKGDESIRDQPFGIQVRNVRCVKCHKYGHINTDKECPMYGKALD----SEAPADRI-DQQRLLEEMKEDGMKMRWSAWD 184 MGKGFNNYMCKKFFHPAS+DNLKRVWMA+Q+ +A +KKQ++L+ QYE+EQ+L+NN+ALLSK+SK+KL VNF+YEPPPGA+KE RE+ED E +KFEWQRK+ APRES+ KGD IRDQPFGIQVRNVRC+KCHK+GHINTDKECP+Y +A+ + +PA D L+++M+EDG+ ++ SA + Sbjct: 1 MGKGFNNYMCKKFFHPASRDNLKRVWMAEQQAEAYKKKQEELRVQYEKEQDLHNNKALLSKESKDKLSVNFMYEPPPGAKKE-REKEDNEPE-YKFEWQRKYN-APRESYCKGDSEIRDQPFGIQVRNVRCIKCHKWGHINTDKECPLYSQAMSVVMANNSPATSTPDALTLVQQMREDGLALKKSALN 186 The following BLAST results are available for this feature:
BLAST of corepressor interacting with rbpj 1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of corepressor interacting with rbpj 1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 5
BLAST of corepressor interacting with rbpj 1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold282_size228295:223243..226224+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold282_size228295-snap-gene-1.23 ID=maker-scaffold282_size228295-snap-gene-1.23|Name=corepressor interacting with rbpj 1|organism=Tigriopus kingsejongensis|type=gene|length=2982bp|location=Sequence derived from alignment at scaffold282_size228295:223243..226224+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'corepressor interacting with rbpj 1' has the following synonyms
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