28s ribosomal protein mitochondrial precursor, maker-scaffold41_size498431-snap-gene-1.15 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 28s ribosomal protein mitochondrial precursor vs. L. salmonis genes
Match: EMLSAG00000010111 (supercontig:LSalAtl2s:LSalAtl2s668:156455:162196:-1 gene:EMLSAG00000010111 transcript:EMLSAT00000010111 description:"snap_masked-LSalAtl2s668-processed-gene-1.14") HSP 1 Score: 135.961 bits (341), Expect = 5.101e-42 Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 0 Query: 110 CILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFNPVRSVKPNPF 198 CILCPRRYA +I+P YKNPKLLAQF+SPHTG VY+SHITGLC MQ +E E K AQ G + T+MKEVHYLKDP L +P + +K NPF Sbjct: 2 CILCPRRYAISIRPDYKNPKLLAQFISPHTGLVYKSHITGLCKSMQDELENEVKRAQDLGYMSTQMKEVHYLKDPVLVDPTKPIKKNPF 90
BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|24212186|sp|Q8R2L5.1|RT18C_MOUSE (RecName: Full=28S ribosomal protein S18c, mitochondrial; Short=MRP-S18-c; Short=Mrps18-c; Short=S18mt-c; AltName: Full=28S ribosomal protein S18-1, mitochondrial; Short=MRP-S18-1; Flags: Precursor) HSP 1 Score: 76.6406 bits (187), Expect = 7.014e-17 Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 0 Query: 87 QRASAPDRPTTLAQDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFN 188 Q S D P + ++PY ++C+LC +R YKN +LL+QF+SP TG +Y HITGLC Q+ + + K AQK G + K+ YLKDP + N Sbjct: 44 QVTSNEDLPVPM-ENPYKEPLKKCVLCEKRV------DYKNVQLLSQFISPFTGCIYGRHITGLCGKKQREITKAIKRAQKMGFMPVTYKDPAYLKDPRVCN 138
BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|108935898|sp|P82917.2|RT18C_BOVIN (RecName: Full=28S ribosomal protein S18c, mitochondrial; Short=MRP-S18-c; Short=Mrps18-c; Short=S18mt-c; AltName: Full=28S ribosomal protein S18-1, mitochondrial; Short=MRP-S18-1; Flags: Precursor) HSP 1 Score: 75.8702 bits (185), Expect = 1.242e-16 Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 0 Query: 87 QRASAPDRPTTLAQDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFN 188 Q S+ D P + ++PY ++CILC +R YKN +LL+QF+SP TG +Y HITGLC Q+ + + K AQ G + K+ YLKDP + N Sbjct: 44 QVTSSEDLPIPM-ENPYKEPLKKCILCEKRV------DYKNVQLLSQFISPFTGCIYGRHITGLCGKKQREITKAIKRAQILGFMPVTYKDPAYLKDPKVCN 138
BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|24212202|sp|Q9Y3D5.1|RT18C_HUMAN (RecName: Full=28S ribosomal protein S18c, mitochondrial; Short=MRP-S18-c; Short=Mrps18-c; Short=S18mt-c; AltName: Full=28S ribosomal protein S18-1, mitochondrial; Short=MRP-S18-1; AltName: Full=Mitochondrial small ribosomal subunit protein bS18c; AltName: Full=Mitochondrial small ribosomal subunit protein bS18m; Flags: Precursor) HSP 1 Score: 75.8702 bits (185), Expect = 1.292e-16 Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 0 Query: 87 QRASAPDRPTTLAQDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFN 188 Q +S D P ++ ++PY ++CILC + YKN +LL+QFVSP TG +Y HITGLC Q+ + + K AQ G + K+ YLKDP + N Sbjct: 43 QVSSNEDLPISM-ENPYKEPLKKCILCGK------HVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYKDPAYLKDPKVCN 137
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|225718232|gb|ACO14962.1| (28S ribosomal protein S18c, mitochondrial precursor [Caligus clemensi]) HSP 1 Score: 171.785 bits (434), Expect = 6.157e-51 Identity = 84/185 (45.41%), Postives = 114/185 (61.62%), Query Frame = 0 Query: 14 VGVPSRSLNVYAKYRQGNSRRKKVGRVDEKKQLRLQAPRWWRPPPPQPQAPLGQTHHPVNRFEAREAEWLTQVQRASAPDRPTTLAQDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFNPVRSVKPNPF 198 +G +R L+ + + K+ RV+ K+ R++ +W+ P + ++P+ T HP RF ++ + S D P A DPY + CILCPRRYA I+P YKNPKLLAQFVSPHTG VY+SHITGLC FMQ+ VE E K AQ G + T+MKE+HYLKDP L +P + +K NP+ Sbjct: 9 IGNTTRGLSTSSTLCGFARKGKRTRRVNPIKEARMRLGPYWKKDPIEMKSPIFNTAHPEQRFASQ------AIPSISKEDEPLECADDPYKTDSAMCILCPRRYAVPIRPDYKNPKLLAQFVSPHTGLVYKSHITGLCQFMQEEVENEVKKAQNLGFMSTQMKEIHYLKDPILVDPTKPIKKNPY 187
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1325298408|ref|XP_023331417.1| (28S ribosomal protein S18c, mitochondrial-like [Eurytemora affinis]) HSP 1 Score: 170.629 bits (431), Expect = 2.687e-50 Identity = 77/146 (52.74%), Postives = 105/146 (71.92%), Query Frame = 0 Query: 53 WWRPPPPQPQAPLGQTHHPVNRFEAREAEWLTQVQRASAPDRPTTLAQDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFNPVRSVKPNPF 198 WW+ P AP+ +T HP N+F+ E ++L +V A+ PD P + DPY EP+ CILCPRRY E + P+YKNPKLL+QF+SPHTGRVY+SHITGLCA+MQ+ VE E + +Q G L T+++ YL+DP+LFNP R ++PN + Sbjct: 58 WWKKPDIIMTAPIAKTFHPTNQFKDLENKFLEEVASAAKPDLPVDI-DDPYKKEPKMCILCPRRYEEKLVPNYKNPKLLSQFISPHTGRVYQSHITGLCAYMQRLVEIEVRRSQDAGFLSTRVRNPLYLQDPSLFNPSRPIRPNSY 202
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|752883766|ref|XP_011259596.1| (PREDICTED: 28S ribosomal protein S18c, mitochondrial [Camponotus floridanus] >gi|307176792|gb|EFN66189.1| 28S ribosomal protein S18c, mitochondrial [Camponotus floridanus]) HSP 1 Score: 105.916 bits (263), Expect = 1.025e-25 Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 0 Query: 100 QDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFNPVRSVKPNPF 198 Q+PY E R+CILC I+P YKN +LL+QF S HTGR+YESHITGLC + Q+ +E E A+ GL+G KE Y++DP LF+P RS +P+ + Sbjct: 52 QNPYVKEKRKCILCRLN----IEPDYKNVRLLSQFQSQHTGRIYESHITGLCKYKQKKLEEEINKARSAGLMGFWTKEPKYVRDPQLFDPNRSFRPHKY 146
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1284995142|ref|XP_023021763.1| (28S ribosomal protein S18c, mitochondrial [Leptinotarsa decemlineata]) HSP 1 Score: 103.99 bits (258), Expect = 4.574e-25 Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 0 Query: 72 VNRFEAREAEWLTQVQRASAPDRPTTLAQDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFNPVRSVKPNPF 198 + +F + +++ R+ + D P ++PY E R CILC + IQ YKN +LL+QF SP+TGR+Y HITGLC+ Q+ VE+E AQ GL+GT KE +L+DP LF+ + ++P+ F Sbjct: 5 IRKFNLKAVVNYSRIIRSCSTDVPDFDMENPYEREKRECILCKHK----IQADYKNVRLLSQFQSPYTGRIYGKHITGLCSKQQELVEKEIVKAQSAGLMGTYSKEPIFLQDPELFDVEKPLRPHRF 127
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|350424006|ref|XP_003493660.1| (28S ribosomal protein S18c, mitochondrial [Bombus impatiens]) HSP 1 Score: 103.99 bits (258), Expect = 5.465e-25 Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 0 Query: 74 RFEAREAEWLTQVQRASAPDRPTTLAQDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFNPVRSVKPNPF 198 R + EA L ++ ++ D+P + ++PY E R CILC I P YKN +LL+QF S HTGR+YE HITGLC Q+ VE+E K AQ+ GL+G K+ ++ DP LF+P KP+ + Sbjct: 24 RSKTNEACALNELDNSADSDKPIDI-KNPYEKERRLCILCKLN----INPDYKNVRLLSQFQSRHTGRIYEKHITGLCHHKQKKVEQEIKKAQQCGLMGFMTKDPKFVNDPMLFDPNFPFKPHKY 143
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|926650469|ref|XP_013791731.1| (28S ribosomal protein S18c, mitochondrial-like isoform X2 [Limulus polyphemus]) HSP 1 Score: 103.219 bits (256), Expect = 1.349e-24 Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 0 Query: 89 ASAPDRPTTLAQDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFNPVRSVKPNP 197 +S+ D P ++PY E +CILC +Y I YKN +LL+QFVSP+TGR+Y+ HITGLC Q+ V++E AQ FG + T KEV + KDP LF+P +P+P Sbjct: 47 SSSDDMPVRDMKNPYEKEKIKCILC--KYG--IHVDYKNIRLLSQFVSPYTGRIYDKHITGLCDAQQKKVKQEILKAQNFGFMPTITKEVKFFKDPKLFDPFNPKRPHP 151
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1218216257|ref|XP_001659742.2| (28S ribosomal protein S18c, mitochondrial [Aedes aegypti]) HSP 1 Score: 102.834 bits (255), Expect = 1.400e-24 Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 0 Query: 89 ASAPDRPTTLAQDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFNPVRSVKPNPF 198 A+ PD P L ++P+A + +CILC I P YKN +LL+QF SP+TGR+Y HITGLC Q+ VE E AQ G + T K V +L+DP LF+P R V+P+ + Sbjct: 35 AADPDSPVELEENPFAKDRVQCILC----RHNITPDYKNVQLLSQFQSPYTGRIYGKHITGLCRRRQEQVENEIIKAQNAGFMSTYHKAVEFLEDPKLFDPERPVRPHKY 140
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|340726404|ref|XP_003401549.1| (28S ribosomal protein S18c, mitochondrial [Bombus terrestris]) HSP 1 Score: 102.064 bits (253), Expect = 3.096e-24 Identity = 54/125 (43.20%), Postives = 74/125 (59.20%), Query Frame = 0 Query: 74 RFEAREAEWLTQVQRASAPDRPTTLAQDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFNPVRSVKPNPF 198 R + EA L ++ + DRP + ++PY E R CILC I P YKN +LL+QF S HTGR+YE HITGLC Q+ VE+E AQ+ GL+G K+ ++ DP LF+P KP+ + Sbjct: 24 RSKTSEACALNELDNSIDSDRPIDI-KNPYEKERRLCILCKLN----INPDYKNVRLLSQFQSRHTGRIYEKHITGLCEHKQKKVEQEINKAQQCGLMGFMTKDPKFVNDPMLFDPNFPFKPHKY 143
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|568251810|gb|ETN61251.1| (mitochondrial ribosomal protein, S18C [Anopheles darlingi]) HSP 1 Score: 102.064 bits (253), Expect = 3.471e-24 Identity = 52/109 (47.71%), Postives = 67/109 (61.47%), Query Frame = 0 Query: 90 SAPDRPTTLAQDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFNPVRSVKPNPF 198 S D P L +P+A E +CILC I P YKN +LL+QF SP+TGRVY HITGLC + VERE AQ GL+ T K V +L DP LF+P ++V+P+ + Sbjct: 42 SDSDAPVALETNPFAKEQIQCILCKHN----ISPDYKNVQLLSQFQSPYTGRVYGRHITGLCKSRHEQVEREIIKAQNAGLMPTYHKAVEFLNDPKLFDPEKAVRPHKY 146
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1035609800|ref|XP_016912520.1| (PREDICTED: 28S ribosomal protein S18c, mitochondrial [Apis cerana] >gi|1241833468|gb|PBC29786.1| 28S ribosomal protein S18c [Apis cerana cerana]) HSP 1 Score: 101.679 bits (252), Expect = 4.185e-24 Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 0 Query: 73 NRFEAREAEWLTQVQRASAPDRPTTLAQDPYAVEPRRCILCPRRYAEAIQPSYKNPKLLAQFVSPHTGRVYESHITGLCAFMQQSVEREAKIAQKFGLLGTKMKEVHYLKDPALFNP 189 N+ A + LT + S PD P ++ ++PY + + CILC I+P YKN +LL+QF S HTGR+YE HITGLC + Q+ VE+E AQ GL+G KE+ + DP LF+P Sbjct: 23 NKTNACTSNELTDLISRSDPDMPISI-ENPYKKKQQLCILCKLN----IEPDYKNVRLLSQFQSRHTGRIYEKHITGLCEYKQKKVEQEIIKAQHAGLMGYMTKELKFCHDPMLFDP 134 The following BLAST results are available for this feature:
BLAST of 28s ribosomal protein mitochondrial precursor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 3
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold41_size498431:117751..119897+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold41_size498431-snap-gene-1.15 ID=maker-scaffold41_size498431-snap-gene-1.15|Name=28s ribosomal protein mitochondrial precursor|organism=Tigriopus kingsejongensis|type=gene|length=2147bp|location=Sequence derived from alignment at scaffold41_size498431:117751..119897+ (Tigriopus kingsejongensis)back to top Synonyms
The feature '28s ribosomal protein mitochondrial precursor' has the following synonyms
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