3 -5 exonuclease, maker-scaffold42_size484952-snap-gene-1.14 (gene) Tigriopus kingsejongensis

Overview
Name3 -5 exonuclease
Unique Namemaker-scaffold42_size484952-snap-gene-1.14
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of 3 -5 exonuclease vs. L. salmonis genes
Match: EMLSAG00000012801 (supercontig:LSalAtl2s:LSalAtl2s974:12731:14770:1 gene:EMLSAG00000012801 transcript:EMLSAT00000012801 description:"maker-LSalAtl2s974-augustus-gene-0.5")

HSP 1 Score: 66.2402 bits (160), Expect = 7.895e-13
Identity = 57/180 (31.67%), Postives = 80/180 (44.44%), Query Frame = 0
Query:   58 CESYMDCKPYHYCYNSYWTAGATCETNFYKEDFTTATYCLDLAE-GKEFPSHDHCQSVDAENRIIKPDE----STHRCFAE-----LGYICKDAYYMPCTPNHDPNGQAIEGEEEACPGNFTCQEFEYTEGGLRKVCIPDQPDATRFDSGDDVQCQRGSDCGYSEEEGAWTTCDNGQCAT 227
            C++ +DC  Y YC+           T        +   C+ +A  G  F +H  C  +    + +KPD     ST RC          Y C  +YY PC    D +G  ++ E+  CP +F C E ++ +G LR VC   +PD    D G DV C+   DCG S    AW TCD G+C  
Sbjct:   22 CKTDLDCPKYGYCHVLPPLVSHCIPTVL------SNLKCVSVAPNGVIFANHTICLEL---GKTLKPDSNELYSTERCILVETPRGRNYTCGLSYYNPCPDTFDNSGTLLKTED--CPNHFNCDEVQFKDGYLR-VC---RPDLMELD-GLDVNCKNNFDCGXSNIYLAWRTCDRGKCVL 185          
BLAST of 3 -5 exonuclease vs. L. salmonis genes
Match: EMLSAG00000005968 (supercontig:LSalAtl2s:LSalAtl2s321:89695:114791:1 gene:EMLSAG00000005968 transcript:EMLSAT00000005968 description:"maker-LSalAtl2s321-augustus-gene-1.27")

HSP 1 Score: 54.6842 bits (130), Expect = 6.703e-9
Identity = 42/135 (31.11%), Postives = 59/135 (43.70%), Query Frame = 0
Query:  100 AEGKEFPSHDHCQSVDA-ENRIIKPDESTHRCF-----AELGYICKDAYYMPCTPNHDPNGQAIEGEEEACPGNFTCQEFEYTEGGLRKVCIPDQPDATRFDSGDDVQCQRGSDCGYSEEEGAWTTCDNGQCATV 228
            ++G  FP+H  C   D  E        S  RC+         Y C  AY   CTP +D  G  ++  ++ CP  F C+  E+ +G  + +C    P     D+G    C    DCGYS  +G W  C  GQC+ V
Sbjct:   67 SQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFVK--DDQCPYKFRCEAAEFKDGK-KNIC---NPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCYGGQCSNV 195          
BLAST of 3 -5 exonuclease vs. nr
Match: gi|1129171780|gb|OLP81629.1| (hypothetical protein AK812_SmicGene37808 [Symbiodinium microadriaticum])

HSP 1 Score: 119.783 bits (299), Expect = 8.826e-25
Identity = 81/255 (31.76%), Postives = 141/255 (55.29%), Query Frame = 0
Query:  226 ATVQFNHNHVNHNH--------VNHNHVNHNHVIHNHNNHDHANHGNHNHENNCYSDDDDRNHHNDNHNSNHYNDNQNNHYDDYNNHYNCNYHKDNHTHVNYNHFNHFNHFNHFNHTHFNHNHFNHTHSNHNHFNHFKHNHFNHN-HTHFNHNH-FNHNHFNHNHENNHYSDDDNCNHHDDNHNSNHYSHDNDCNHHNDNQNNHNDDCNNHNDDYNNHSNCNHHDDNHHDDNHHDDNHHDDNFINHHDDNHHDDN 470
            A+V  NHNH  ++H         + +  +H+    NH+ HDH N+ +  H ++ + + D  +H N+ H  +H + ++N+ Y D+ N+ +  YH D++ H N+++ +H N+ + ++H  ++ NH  H H N+ H  H    H NH+ H H N+ H ++H+ ++ NH+ + + ++ +  HHDD H  NH  HD    H N+    H+DD  + N DY++H N  H    HHDD H + ++HD    N+    HH+DN
Sbjct: 2579 ASVDINHNHDYNDHPYHDDYQHHDDHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAH-PYHHDDY-HRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHR-NHDYHD----HPNNAHPYHHDD-YHRNHDYHDHPNNAH--PYHHDDYHRNHDYHDHP--NNAHPYHHNDN 2821          

HSP 2 Score: 117.087 bits (292), Expect = 6.017e-24
Identity = 75/250 (30.00%), Postives = 137/250 (54.80%), Query Frame = 0
Query:  240 VNHNHVNHNH------------------VIHNHNNHDHANHGNHNHENNCYSDDDDRNHHNDNHNSNHYNDNQNNHYDDYNNHYNCNYHKDNHTHVNYNHFNHFNHFNHFNHTHFNHNHFNHTHSNHNHFNHFKHNHFNHN-HTHFNHNH-FNHNHFNHNHENNHYSDDDNCNHHDDNHNSNHYSHDNDCNHHNDNQNNHNDDCNNHND--DYNNHSNCNHHDDNHHDDNHHDDNHHDDNFINHHDDNHH 467
            +NHNH  ++H                     NH+ HDH N+ +  H ++ + + D  +H N+ H  +H + ++N+ Y D+ N+ +  YH D++ H N+++ +H N+ + ++H  ++ NH  H H N+ H  H    H NH+ H H N+ H ++H+ ++ NH+ + + ++ +  HHDD H  NH  HD    H N+    H+DD + ++D  D+ N+++  HHDD H + ++HD  H ++    HH+DN +
Sbjct: 2583 INHNHDYNDHPYHDDYQHHDDHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAH-PYHHDDY-HRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHR-NHDYHD----HPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHD--HPNNAHPYHHNDNRN 2823          

HSP 3 Score: 111.309 bits (277), Expect = 5.640e-22
Identity = 67/208 (32.21%), Postives = 121/208 (58.17%), Query Frame = 0
Query:  232 HNHVNHNH-VNHNHVNHNHVIHNHNNHDHANHGNHNHENNCYSDDDDRNH---HNDNHNSNHYNDNQNN----HYDDYNNHYNCN--------YHKDNHTHVNYNHFNHFNHFNHFNHTHFNHNHFNHTHSNHNHFNHFKHNHFNHN-HTHFNHNH-FNHNHFNHNHENNHYSDDDNCNHHDDNH-NSNHYSHDNDCN--HHNDNQNN 418
            H+H N+ H  +H+  + NH  H+H N+ H  H +  H N+ Y D  +  H   H+D H ++ Y+D+ NN    H+DDY+ +++ +        YH D++ H N+++ +H N+ + ++H  ++ NH  H H N+ H  H    H NH+ H H N+ H ++H+ ++ NH+ + + ++ +  HHDD H N +++ H N+ +  HHNDN+N+
Sbjct: 2618 HDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDY-HRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHNDNRNS 2824          

HSP 4 Score: 99.7525 bits (247), Expect = 3.094e-18
Identity = 55/179 (30.73%), Postives = 105/179 (58.66%), Query Frame = 0
Query:  230 FNHNHVNHNHVNHNHVNHNHVIH------NHNNHDHANHGNHNHENNCYSDDDDRNHHNDNHNSNHYNDNQNNHYDDYNNHYNCNYHKDNHTHVNYNHFNHFNHFNHFNHTHFNHNHFNHTHSNHNHFNHFKHNHFNHN-HTHFNHNH-FNHNHFNHNHENNHYSDDDNCNHHDDNHNS 400
            ++H+  + NH  H+H N+ H  H      NH+ HDH N+ +  H ++ + + D  +H N+ H  +H + ++N+ Y D+ N+ +  YH D++ H N+++ +H N+ + ++H  ++ NH  H H N+ H  H    H NH+ H H N+ H ++H+ ++ NH+ + + ++ +  HH+DN NS
Sbjct: 2648 YHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAH-PYHHDDY-HRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHNDNRNS 2824          

HSP 5 Score: 95.5153 bits (236), Expect = 6.825e-17
Identity = 76/234 (32.48%), Postives = 124/234 (52.99%), Query Frame = 0
Query:  245 VNHNHVIHNHNNHDHANHGNHNHENNCYSDDDDRNHHNDNHNSNHYNDNQNNHYDDYNNHYNCNYHKDNHTHVNYNHFNHFNHFNHFNHTHFNHNHFNHTHSNHNHFNHFKHNHFNHN-HTHFNHNH-FNHNHFNHNHENNHYSDDDNCNHHDDNHNSNHYSHDNDCNHHNDNQNNHNDDCNNHNDDYNNHSNCNHHDDNHHDDNHHDDNHHDDNFINHHDDNHHDDNFINNHN 476
            +NHNH   ++N+H + +   H+ ++  + DD  RNH  D H+  H N+    H+DDY              H N+++ +H N+ + ++H  ++ NH  H H N+ H  H    H NH+ H H N+ H ++H+ ++ NH+ + + ++ +  HHDD H  NH  HD    H N+    H+DD  + N DY++H N  H    HHDD H + ++HD    N+    HHDD +  NH+
Sbjct: 2583 INHNH---DYNDHPYHDDYQHHDDHPYHHDDYHRNH--DYHD--HPNNAHPYHHDDY--------------HRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHR-NHDYHD----HPNNAHPYHHDD-YHRNHDYHDHPNNAH--PYHHDDYHRNHDYHDHP--NNAHPYHHDD-YHRNHD 2784          
The following BLAST results are available for this feature:
BLAST of 3 -5 exonuclease vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000128017.895e-1331.67supercontig:LSalAtl2s:LSalAtl2s974:12731:14770:1 g... [more]
EMLSAG000000059686.703e-931.11supercontig:LSalAtl2s:LSalAtl2s321:89695:114791:1 ... [more]
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BLAST of 3 -5 exonuclease vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 3 -5 exonuclease vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1129171780|gb|OLP81629.1|8.826e-2531.76hypothetical protein AK812_SmicGene37808 [Symbiodi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold42_size484952supercontigscaffold42_size484952:121534..124234 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold42_size484952-snap-gene-1.14-mRNA-1maker-scaffold42_size484952-snap-gene-1.14-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold42_size484952:121534..124234-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold42_size484952-snap-gene-1.14 ID=maker-scaffold42_size484952-snap-gene-1.14|Name=3 -5 exonuclease|organism=Tigriopus kingsejongensis|type=gene|length=2701bp|location=Sequence derived from alignment at scaffold42_size484952:121534..124234- (Tigriopus kingsejongensis)
GCGAGAAGAATGAAGACATATCTCGTGATTATCACTCTTCTGGCCGTGAC CTCGGCCAGGCCTCAGGACGAGCCCGTCGAGAGCAACACCCAGGCCTCGG AGGCGCTCATTGAGACCATTGGCGAAGAAATTAATCTAGAGGAAGACAAA GACAAGCCTACCGAGACATTGGAAAATCAATGTGAAAGTTACATGGACTG CAAGCCCTATCATTATTGCTACAACAGCTACTGGACAGCCGGGTAATTAT CCCCAAGGTTAAATCTATATCAGTCTGGGGACCGTACCGATTATGGTGTT CAATCGGTTCTTCAGTGCCACTTGCGAAACAAACTTCTACAAGGAGGATT TCACCACGGCTACATATTGTTTGGATTTGGCTGAAGGCAAGGAATTCCCA TCCCACGACCATTGTCAGTCCGTGGATGCCGAAAACCGGGTAGGGAAATG ATGATTGGATCTCATTGATCCCCGAGCTACCATGACCTCTCTGTATTTAG ATCATCAAACCGGACGAAAGTACCCATAGATGCTTCGCCGAGCTTGGGTA CATCTGTAAGGATGCTTACTACATGCCTTGCACTCCCAACCATGATCCCA ATGGTCAGGCCATTGAGGGTGAAGAGGAGGCTTGTCCCGGCAATTTCACG TAAGTCCTGGCATTGCTCAAGGCTGTAGTTCCCATCTTAAGCTGGAGTTT TGCTCACATTTCAGATGCCAGGAGTTTGAATACACCGAAGGAGGCTTGAG GAAAGTGTGTATCCCCGATCAACCCGATGCCACGCGCTTCGATTCGGGCG ATGATGTCCAATGCCAACGTGGCAGCGACTGTGGTTATTCCGAGGAAGAA GGGGCTTGGACCACTTGCGACAACGGCCAGTGTGCCACCGTTCAATTTAA GTGATCACATTGTTACAGAGCCGATCAATAAAAGTGTTTGGATCATTTTC CAACAATGAGTAACCTGTCGGTGTTATGATAGCTAGAATAAGGTAGATTG CATGCGCATTTGAACACCAACTTGGATCACTTTGTCTTGCGTGACTCGAG GTGGATAGAGGTGTTGTAATCGTCCAAAGTATCCAGCTGACATTGGATCA CGAAATTGCATTGCAGTACATGAGCAACACAATACGGTGATTGACGAGTG AGGCCTCAAATTCAAGGCTGTAGTTCTTTTCCAGAGACCAGTACTAAATG AATCTTCCTAGGGCGAAGACCTCGTAGAAAACATGAAATACTACATATGG CTGACTTTTCTGATTACCCCAGGTAAATCACACTGTATTCCTAACGCTAG GAGCTCATCCCCTTATTCAACCATGACGTACACCGATAGCCCAGTTTAAT AATGTATTTTTTTAGTTATTTCTACTGCGACGTTTAACACTCCAACCCGA TGCTTTGTCAAGGCAGAAGGAGAAGAAAACTTCAATGGTGCTAAAAACTT CTGCGAAACTTCGCAAAATCAAGGACTGGCGCGTGTTGATACACCAGATG ATTGGGCTCTTACGAAGTTGGCTATGGGTATGGTTTTAGTATCTCTGTAC TGTGATGTATTAGCACTTTTAATGTTATGTTTGGTTAAAAAAATGGTGAC TCGTCTGGGACACTATCCACAATGAGTTTTCGGAGACTTTCTATTCTTCC TACAAGTCTCCTTCGTTGCAGATAATTTACTGACATGGGATCAAACTGCA TGGGTTGGTATTTGGAACAAATATGAAGACAGATGCACTCAAAACCGCTG CAATGGCGTACTGTATAATGCAAACAACGTTGTTTTGAGCAACTTGAACC ACATCAATGTGGAATGGAAAGTTGGTTACAAGAGATGTGTCCAATTCAAA AAAAGAAAAGATGATGCTAAACCAGATGAATTCGACGATAAACATTGCAG CGAAGAGACATTTCCGATTTGCGAATATGCTTGCACAGCCACAACCACGT CAACCACAACCACGTCAACCACAACCACGTCAACCACAACCACGTCATCC ACAACCACAACAACCACGACCACGCCAACCACGGCAACCACAACCACGAA AACAACTGCTACAGCGACGACGACGACCGTAACCACCACAATGACAACCA CAACAGCAACCACTACAACGACAACCAAAACAACCACTACGACGATTACA ATAACCATTACAACTGCAACTACCACAAGGACAACCACACCCATGTCAAC TACAACCACTTCAACCACTTCAACCACTTCAACCACTTCAACCACACCCA CTTCAACCACAACCACTTCAACCACACCCACTCCAACCACAACCACTTCA ACCATTTCAAACACAACCACTTCAACCACAACCACACCCACTTCAACCAC AACCACTTCAACCACAACCACTTCAACCACAACCACGAAAACAACCACTA CAGCGACGACGACAACTGCAACCACCACGACGACAACCACAACAGCAACC ACTACAGCCACGACAACGACTGCAACCACCACAATGACAACCAAAACAAC CACAACGACGACTGCAACAACCACAACGACGACTACAACAACCACAGCAA CTGCAACCACCACGACGACAACCACCACGACGACAACCACCACGACGACA ACCACCACGACGACAACTTTATCAACCACCACGACGACAACCACCACGAC GACAACTTTATCAACAACCACAACCCCCGTGGTTTCTACTTCATATTCTA G
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Synonyms
The feature '3 -5 exonuclease' has the following synonyms
Synonym
Tk06360
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