3 -5 exonuclease, maker-scaffold42_size484952-snap-gene-1.14 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 3 -5 exonuclease vs. L. salmonis genes
Match: EMLSAG00000012801 (supercontig:LSalAtl2s:LSalAtl2s974:12731:14770:1 gene:EMLSAG00000012801 transcript:EMLSAT00000012801 description:"maker-LSalAtl2s974-augustus-gene-0.5") HSP 1 Score: 66.2402 bits (160), Expect = 7.895e-13 Identity = 57/180 (31.67%), Postives = 80/180 (44.44%), Query Frame = 0 Query: 58 CESYMDCKPYHYCYNSYWTAGATCETNFYKEDFTTATYCLDLAE-GKEFPSHDHCQSVDAENRIIKPDE----STHRCFAE-----LGYICKDAYYMPCTPNHDPNGQAIEGEEEACPGNFTCQEFEYTEGGLRKVCIPDQPDATRFDSGDDVQCQRGSDCGYSEEEGAWTTCDNGQCAT 227 C++ +DC Y YC+ T + C+ +A G F +H C + + +KPD ST RC Y C +YY PC D +G ++ E+ CP +F C E ++ +G LR VC +PD D G DV C+ DCG S AW TCD G+C Sbjct: 22 CKTDLDCPKYGYCHVLPPLVSHCIPTVL------SNLKCVSVAPNGVIFANHTICLEL---GKTLKPDSNELYSTERCILVETPRGRNYTCGLSYYNPCPDTFDNSGTLLKTED--CPNHFNCDEVQFKDGYLR-VC---RPDLMELD-GLDVNCKNNFDCGXSNIYLAWRTCDRGKCVL 185
BLAST of 3 -5 exonuclease vs. L. salmonis genes
Match: EMLSAG00000005968 (supercontig:LSalAtl2s:LSalAtl2s321:89695:114791:1 gene:EMLSAG00000005968 transcript:EMLSAT00000005968 description:"maker-LSalAtl2s321-augustus-gene-1.27") HSP 1 Score: 54.6842 bits (130), Expect = 6.703e-9 Identity = 42/135 (31.11%), Postives = 59/135 (43.70%), Query Frame = 0 Query: 100 AEGKEFPSHDHCQSVDA-ENRIIKPDESTHRCF-----AELGYICKDAYYMPCTPNHDPNGQAIEGEEEACPGNFTCQEFEYTEGGLRKVCIPDQPDATRFDSGDDVQCQRGSDCGYSEEEGAWTTCDNGQCATV 228 ++G FP+H C D E S RC+ Y C AY CTP +D G ++ ++ CP F C+ E+ +G + +C P D+G C DCGYS +G W C GQC+ V Sbjct: 67 SQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFVK--DDQCPYKFRCEAAEFKDGK-KNIC---NPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCYGGQCSNV 195
BLAST of 3 -5 exonuclease vs. nr
Match: gi|1129171780|gb|OLP81629.1| (hypothetical protein AK812_SmicGene37808 [Symbiodinium microadriaticum]) HSP 1 Score: 119.783 bits (299), Expect = 8.826e-25 Identity = 81/255 (31.76%), Postives = 141/255 (55.29%), Query Frame = 0 Query: 226 ATVQFNHNHVNHNH--------VNHNHVNHNHVIHNHNNHDHANHGNHNHENNCYSDDDDRNHHNDNHNSNHYNDNQNNHYDDYNNHYNCNYHKDNHTHVNYNHFNHFNHFNHFNHTHFNHNHFNHTHSNHNHFNHFKHNHFNHN-HTHFNHNH-FNHNHFNHNHENNHYSDDDNCNHHDDNHNSNHYSHDNDCNHHNDNQNNHNDDCNNHNDDYNNHSNCNHHDDNHHDDNHHDDNHHDDNFINHHDDNHHDDN 470 A+V NHNH ++H + + +H+ NH+ HDH N+ + H ++ + + D +H N+ H +H + ++N+ Y D+ N+ + YH D++ H N+++ +H N+ + ++H ++ NH H H N+ H H H NH+ H H N+ H ++H+ ++ NH+ + + ++ + HHDD H NH HD H N+ H+DD + N DY++H N H HHDD H + ++HD N+ HH+DN Sbjct: 2579 ASVDINHNHDYNDHPYHDDYQHHDDHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAH-PYHHDDY-HRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHR-NHDYHD----HPNNAHPYHHDD-YHRNHDYHDHPNNAH--PYHHDDYHRNHDYHDHP--NNAHPYHHNDN 2821 HSP 2 Score: 117.087 bits (292), Expect = 6.017e-24 Identity = 75/250 (30.00%), Postives = 137/250 (54.80%), Query Frame = 0 Query: 240 VNHNHVNHNH------------------VIHNHNNHDHANHGNHNHENNCYSDDDDRNHHNDNHNSNHYNDNQNNHYDDYNNHYNCNYHKDNHTHVNYNHFNHFNHFNHFNHTHFNHNHFNHTHSNHNHFNHFKHNHFNHN-HTHFNHNH-FNHNHFNHNHENNHYSDDDNCNHHDDNHNSNHYSHDNDCNHHNDNQNNHNDDCNNHND--DYNNHSNCNHHDDNHHDDNHHDDNHHDDNFINHHDDNHH 467 +NHNH ++H NH+ HDH N+ + H ++ + + D +H N+ H +H + ++N+ Y D+ N+ + YH D++ H N+++ +H N+ + ++H ++ NH H H N+ H H H NH+ H H N+ H ++H+ ++ NH+ + + ++ + HHDD H NH HD H N+ H+DD + ++D D+ N+++ HHDD H + ++HD H ++ HH+DN + Sbjct: 2583 INHNHDYNDHPYHDDYQHHDDHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAH-PYHHDDY-HRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHR-NHDYHD----HPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHD--HPNNAHPYHHNDNRN 2823 HSP 3 Score: 111.309 bits (277), Expect = 5.640e-22 Identity = 67/208 (32.21%), Postives = 121/208 (58.17%), Query Frame = 0 Query: 232 HNHVNHNH-VNHNHVNHNHVIHNHNNHDHANHGNHNHENNCYSDDDDRNH---HNDNHNSNHYNDNQNN----HYDDYNNHYNCN--------YHKDNHTHVNYNHFNHFNHFNHFNHTHFNHNHFNHTHSNHNHFNHFKHNHFNHN-HTHFNHNH-FNHNHFNHNHENNHYSDDDNCNHHDDNH-NSNHYSHDNDCN--HHNDNQNN 418 H+H N+ H +H+ + NH H+H N+ H H + H N+ Y D + H H+D H ++ Y+D+ NN H+DDY+ +++ + YH D++ H N+++ +H N+ + ++H ++ NH H H N+ H H H NH+ H H N+ H ++H+ ++ NH+ + + ++ + HHDD H N +++ H N+ + HHNDN+N+ Sbjct: 2618 HDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDY-HRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHNDNRNS 2824 HSP 4 Score: 99.7525 bits (247), Expect = 3.094e-18 Identity = 55/179 (30.73%), Postives = 105/179 (58.66%), Query Frame = 0 Query: 230 FNHNHVNHNHVNHNHVNHNHVIH------NHNNHDHANHGNHNHENNCYSDDDDRNHHNDNHNSNHYNDNQNNHYDDYNNHYNCNYHKDNHTHVNYNHFNHFNHFNHFNHTHFNHNHFNHTHSNHNHFNHFKHNHFNHN-HTHFNHNH-FNHNHFNHNHENNHYSDDDNCNHHDDNHNS 400 ++H+ + NH H+H N+ H H NH+ HDH N+ + H ++ + + D +H N+ H +H + ++N+ Y D+ N+ + YH D++ H N+++ +H N+ + ++H ++ NH H H N+ H H H NH+ H H N+ H ++H+ ++ NH+ + + ++ + HH+DN NS Sbjct: 2648 YHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAH-PYHHDDY-HRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHNDNRNS 2824 HSP 5 Score: 95.5153 bits (236), Expect = 6.825e-17 Identity = 76/234 (32.48%), Postives = 124/234 (52.99%), Query Frame = 0 Query: 245 VNHNHVIHNHNNHDHANHGNHNHENNCYSDDDDRNHHNDNHNSNHYNDNQNNHYDDYNNHYNCNYHKDNHTHVNYNHFNHFNHFNHFNHTHFNHNHFNHTHSNHNHFNHFKHNHFNHN-HTHFNHNH-FNHNHFNHNHENNHYSDDDNCNHHDDNHNSNHYSHDNDCNHHNDNQNNHNDDCNNHNDDYNNHSNCNHHDDNHHDDNHHDDNHHDDNFINHHDDNHHDDNFINNHN 476 +NHNH ++N+H + + H+ ++ + DD RNH D H+ H N+ H+DDY H N+++ +H N+ + ++H ++ NH H H N+ H H H NH+ H H N+ H ++H+ ++ NH+ + + ++ + HHDD H NH HD H N+ H+DD + N DY++H N H HHDD H + ++HD N+ HHDD + NH+ Sbjct: 2583 INHNH---DYNDHPYHDDYQHHDDHPYHHDDYHRNH--DYHD--HPNNAHPYHHDDY--------------HRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHRNHDYHDHPNNAHPYHHDDYHR-NHDYHD----HPNNAHPYHHDD-YHRNHDYHDHPNNAH--PYHHDDYHRNHDYHDHP--NNAHPYHHDD-YHRNHD 2784 The following BLAST results are available for this feature:
BLAST of 3 -5 exonuclease vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of 3 -5 exonuclease vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of 3 -5 exonuclease vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold42_size484952:121534..124234- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold42_size484952-snap-gene-1.14 ID=maker-scaffold42_size484952-snap-gene-1.14|Name=3 -5 exonuclease|organism=Tigriopus kingsejongensis|type=gene|length=2701bp|location=Sequence derived from alignment at scaffold42_size484952:121534..124234- (Tigriopus kingsejongensis)back to top Synonyms
The feature '3 -5 exonuclease' has the following synonyms
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