retinoid x, maker-scaffold42_size484952-snap-gene-3.25 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 138.658 bits (348), Expect = 6.462e-35 Identity = 129/439 (29.38%), Postives = 197/439 (44.87%), Query Frame = 0 Query: 486 DQFIHDIL--SEDVIDPCSGEDVQAWSTLSESTLSPKTEDESVSL-------RLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYM-CKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELK-VMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKA-LFQGISMGLEEMT-EIDVEDRQTLVQENGSAFFALIMSLYSIPN-NFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVL--------KLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVF-------RSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895 D I++IL S+ S D + ++ L+ +TLS ED S + RLCQ+CG AGKH YYGGQ C SCRAFFRRSVQN SY ++ C + C I+ K+R++C CR++KC+ AGM W+ D ERR K+ A + +K P+ D E T E+ V I N L+++ + +D L D + +L+ + EK L ISMG + ED L Q N S + L SI N NF + ++L ++ ++ N N + N+ +E L P + Y TF LV++I V EN + +++L ++F + G K + ++R Q + ML RY + ++ +K+ K K +ML + E Sbjct: 56 DLLINEILYLSQSSDSFLSNADQENFNELNSTTLS---EDSSQIIIGRQALPRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSKKS--------AMTLNNNKP-PLPSFNDPEGLTSIEVSIVFTINNNLHKNFLDNLNTMVKRDSDFLIDFVDYLAFPTRSEYPYLKMAMSLEKIQLLSLISMGTSNSSLHFSQEDLYVLYQIN-SPKINIFRELSSIKNPNFPDI-DELINSV-RLLHLNNNETIQNLPSRVEFTLQHYLLNHDLCPNENDNYSTFLH---------------LVSQINSWVMDDENVIKQDKFSYIIMLFILFFDRTDSVKISGVKFKDPEMIDRAQLAYVQMLKRYFQRKYPRKSSKKFLKGIMLPSLIAE 464 HSP 2 Score: 97.0561 bits (240), Expect = 2.756e-21 Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 0 Query: 125 QTLPK-CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFK-CTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212 Q LP+ C IC AGKH YYG + C SCR FFRRSVQN + F C+ + +C I+ K+ K+C+ CR+QKC+ AGM+ ++V +R+ + Sbjct: 101 QALPRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSK 190
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22") HSP 1 Score: 124.405 bits (311), Expect = 2.849e-30 Identity = 115/413 (27.85%), Postives = 185/413 (44.79%), Query Frame = 0 Query: 510 STLSESTLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTY-MCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFE--FTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKALFQG-ISMGLEEMTEIDVEDRQTL--VQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTN-PNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRA-------------LVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSH-------GAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895 +TLSE + E++ RLCQ+CG AGKH YYGGQ C SCRAFFRRSVQN SY + C + C I+ ++R+SC CR++KC+ AGM W++ D ERR K K A +L P+ D T+ E V I N + +++ + ++ L D + +L + EK F ISMG R +L QE+ + LY I NF K+ + R + ++ TN P++ +++++ +L L N+ T + + + + H LV++I V + EN+ + +++ ++F G K + ++R Q + ML RY + R+ +K+ K K +ML + E Sbjct: 86 ATLSEPSSQIIIRREALP-RLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSK---KSAMILNNNT-------PLLPSFDDPGGLTSLEVSFVFTINNKLRKSFFDNVNSMVIRNSDFLIDFVDYLAFPARSEYPYLRMAMSLEKIQFLSFISMG---------TSRSSLHFSQED-------LYILYDI--NFPKI--NTFREVSSITTTNCPDI--DELINSVHLLHL--KNNETLQNLPSRIEFTIQHYILNHHLYPNENDNHSRFLHLVSQINSWVMNDENHTKKDKFSYIIMFFILFFDRTDSVTLSGVKFRDPELIDRAQLIYVQMLKRYFQRRYPRKSSKKFLKGIMLPSLIAE 463 HSP 2 Score: 97.4413 bits (241), Expect = 2.417e-21 Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 0 Query: 111 PHDTIIVSAEFRPTQTLPK-CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFK-CTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212 P II+ E LP+ C IC AGKH YYG + C SCR FFRRSVQN + F C+ + +C I+ ++ KSC+ CR+QKC+ AGM+ ++V +R+ + Sbjct: 91 PSSQIIIRRE-----ALPRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSK 189
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24") HSP 1 Score: 98.5969 bits (244), Expect = 8.282e-22 Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEE---RRVKREHKRAKVLKAKDVKRDKVLPIS 636 +C VCG A H +YGG C SCRAFFRRSV + TY C AC I +R++C CRY+KCLE+GM P W++S+EE R + + ++ K K+V + + ++ Sbjct: 90 VCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPKHT--TYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKYVRKNKTTCGKNVNNNNTIEVN 197 HSP 2 Score: 95.1301 bits (235), Expect = 1.364e-20 Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 0 Query: 122 RPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSK 220 +P T C +C + A H +YG C SCR FFRRSV H + C+ C I + K+C+FCRY+KCL++GMKP++V S+E++ R L +Y K Sbjct: 83 KPKMTEMVCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPK--HTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKYVRK 179
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 83.9593 bits (206), Expect = 5.003e-17 Identity = 39/93 (41.94%), Postives = 49/93 (52.69%), Query Frame = 0 Query: 122 RPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCT-----GSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQR 209 RP C IC + A H +YGA C SCR FF R+V F+C SG C I + C+FCRY+ CL AGM P+YV + E+R Sbjct: 129 RPEPMTDVCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221 HSP 2 Score: 78.5666 bits (192), Expect = 2.842e-15 Identity = 36/86 (41.86%), Postives = 47/86 (54.65%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMC-----KASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER 610 +C++CG A HN+YG C SCRAFF R+V + + C SG C I +R C CRY CL AGM P ++ + EER Sbjct: 136 VCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3") HSP 1 Score: 78.1814 bits (191), Expect = 3.285e-15 Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 0 Query: 99 LLSQEFFNSKPNPHDTIIVSAEFRPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSV--QNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYV 203 L S FF S+ T A+F T C ICS++A H +YGA C SCR FFRR+V ++H C+ C I ++ K C+FCR+ KCL+AGMK +V Sbjct: 35 LQSNMFFTSETMRTRTYKKRAKFIRKVT---CHICSDTANDHIHYGAIACXSCRAFFRRAVICNAEYH----CSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWV 134 HSP 2 Score: 78.1814 bits (191), Expect = 3.343e-15 Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 0 Query: 531 CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDV 627 C +C A H +YG C SCRAFFRR+V + Y C C I ++R+ C CR+ KCLEAGM W++S+ E+R K+E R K LKA+ + Sbjct: 63 CHICSDTANDHIHYGAIACXSCRAFFRRAVICNA--EYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVMSESEKREKKEKIRLKKLKAQQL 157
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6") HSP 1 Score: 77.0258 bits (188), Expect = 8.617e-15 Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212 CP+C + + +YG TC SC+GFF+R+VQN+ ++ C +C ID K C +CR+QKCL GMK V+ R R Sbjct: 186 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNKK--VYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGR 265 HSP 2 Score: 74.3294 bits (181), Expect = 7.119e-14 Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAKDVKRDKVL 633 LC VCG + +YG CESC+ FF+R+VQN+ Y C A +C ID R+ C CR++KCL+ GM + + D R + + +KR + K + +++ +V+ Sbjct: 185 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNKK--VYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGRNKFGPMYKRDRARKLQVLRQRQVI 289
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0") HSP 1 Score: 73.9442 bits (180), Expect = 6.715e-14 Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 0 Query: 506 VQAWSTLSESTLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE 615 VQ +S + E+ K + LC VCG A + +Y CE C+ FFRRS+ S Y CK +G C+ID RR C CR +KC GM + ++ + KR+ Sbjct: 148 VQQYSQMVENERKKKGSSSRPAEELCLVCGDRASGY-HYNALACEGCKGFFRRSITKNS--NYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQKRQ 254 HSP 2 Score: 62.7734 bits (151), Expect = 2.742e-10 Identity = 57/228 (25.00%), Postives = 103/228 (45.18%), Query Frame = 0 Query: 122 RPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQE---QRKERILQRYGSK--------KSQPNQINGSMKLQMHAV---MAGT--FTVEEHQCL--FGWYQKWHDFGASKSLDYFCDHVGVFQAILESSYEGKPMSNSAFRSMTKA---DEYVIVSYYFNEEEIQNLHFDDRMTLI 328 RP + L C +C + A + +Y A C C+GFFRRS+ + + C +G+C ID + C+ CR +KC GM+ V + Q+++ + KS N NGS+ + M + ++ T EE + + ++Q+ ++ + L+ V+ + S+ + S+ FR MT+ +IV + + QNL DD++ L+ Sbjct: 167 RPAEEL--CLVCGDRASGY-HYNALACEGCKGFFRRSITKNSN--YTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQKRQAKAAAAAAAXXDTTVDPKSNNNGKNGSISIDMASFPKRLSSTKPLKPEEEELINRLVYFQEEYEHPSEADLNR------VYHVPMHSTNSSESESDRLFRHMTEMTILTVQLIVEFSKHLPGFQNLCRDDQINLL 383
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53") HSP 1 Score: 73.559 bits (179), Expect = 1.634e-13 Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 0 Query: 122 RPTQTLPKCPICSNSA-GKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQ 204 +P Q+L C IC + A G H YG TC C+GFF+R+VQN+ I+ C G C I+ C++CR+QKCLQ GM A V+ Sbjct: 276 QPQQSL-VCMICEDRATGLH--YGIITCEGCKGFFKRTVQNKR--IYTCVADGECEINKAQRNRCQYCRFQKCLQKGMVLAAVR 354 HSP 2 Score: 67.0106 bits (162), Expect = 1.507e-11 Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 0 Query: 530 LCQVC-----GLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGM 599 +C +C GLH YG CE C+ FF+R+VQN+ Y C A G C+I+ R C CR++KCL+ GM Sbjct: 282 VCMICEDRATGLH------YGIITCEGCKGFFKRTVQNKRI--YTCVADGECEINKAQRNRCQYCRFQKCLQKGM 348
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13") HSP 1 Score: 72.7886 bits (177), Expect = 1.745e-13 Identity = 38/115 (33.04%), Postives = 68/115 (59.13%), Query Frame = 0 Query: 126 TLPKCPICSNSA-GKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVM 239 + C +C + A GKH YGA +C C+GFFRRSV+ + ++ C + C ++ +C++CR + C++AGMK + VQ++ ++RI R KK+ +N + +L + A++ Sbjct: 147 NIQNCAVCGDRATGKH--YGAASCDGCKGFFRRSVRKER--VYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNE---RDRISCR---KKTSAKDMNSANELTVTALL 251 HSP 2 Score: 67.0106 bits (162), Expect = 1.153e-11 Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 0 Query: 531 CQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAK 620 C VCG A GKH YG C+ C+ FFRRSV+ + Y C+ + AC ++ R +C CR + C++AGM + ++ +R R+ AK Sbjct: 151 CAVCGDRATGKH--YGAASCDGCKGFFRRSVRKER--VYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDRISCRKKTSAK 237
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10") HSP 1 Score: 72.0182 bits (175), Expect = 3.085e-13 Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 0 Query: 500 PCSGEDVQAWSTLSESTLSPK--TEDESVSLRLCQVCG-LHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKR 618 P D S+ SE+ L + ++E R C VCG + +G H YG CE+C+AFF+R++Q Y AS C+I+ + R++C CR++KCL GM + + D R +++++R Sbjct: 238 PPGSPDHHLCSSTSETNLFSRDIIKEEEGQRRTCLVCGDIASGFH--YGVSSCEACKAFFKRTIQGNI--EYTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGRQKYRR 355 HSP 2 Score: 56.6102 bits (135), Expect = 1.857e-8 Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRY 217 C +C + A +YG +C +C+ FF+R++Q + S C I+ + K+C+ CR+QKCL+ GM V+ R R Q+Y Sbjct: 271 CLVCGDIASGF-HYGVSSCEACKAFFKRTIQGNIE--YTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGR--QKY 353
BLAST of retinoid x vs. SwissProt
Match: gi|6016234|sp|P79926.1|HNF4B_XENLA (RecName: Full=Hepatocyte nuclear factor 4-beta; Short=HNF-4-beta; AltName: Full=Nuclear receptor subfamily 2 group A member 3) HSP 1 Score: 82.8037 bits (203), Expect = 2.374e-15 Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = 0 Query: 85 PDLSEFMDEQTIMDLLSQEFFNSKPNPHDTIIVSAEFRPTQTLPK-----CPICSNSA-GKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQM 235 PD +E +D M EF + + P +T I++ E L C IC + A GKH YGA +C C+GFFRRSV+ H ++ C S C +D C++CR +KC +AGMK VQ++ ++RI R S + NGS+ + + Sbjct: 4 PDYTETLDSSYTM----LEFDSIRVLPSNTEIITVETASPGLLNNGINSFCAICGDRATGKH--YGASSCDGCKGFFRRSVRKNH--VYACRFSRQCIVDKDKRNQCRYCRLRKCFRAGMKKEAVQNE---RDRISMRRSSYED-----NGSLSINV 144 HSP 2 Score: 66.2402 bits (160), Expect = 4.933e-10 Identity = 35/100 (35.00%), Postives = 51/100 (51.00%), Query Frame = 0 Query: 512 LSESTLSPKTEDESVSLRLCQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER 610 ++ T SP + ++ C +CG A GKH YG C+ C+ FFRRSV+ Y C+ S C +D R C CR KC AGM + + ++ +R Sbjct: 32 ITVETASPGLLNNGIN-SFCAICGDRATGKH--YGASSCDGCKGFFRRSVRKNH--VYACRFSRQCIVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDR 126
BLAST of retinoid x vs. SwissProt
Match: gi|205371750|sp|P49880.2|ECR_AEDAE (RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone receptor; Short=20E receptor; AltName: Full=EcRH; Short=AaEcR; AltName: Full=Ecdysteroid receptor; AltName: Full=Nuclear receptor subfamily 1 group H member 1) HSP 1 Score: 83.9593 bits (206), Expect = 2.885e-15 Identity = 57/181 (31.49%), Postives = 86/181 (47.51%), Query Frame = 0 Query: 468 YTTTMINFDTSPLEALITDQF-IHDILSEDVIDPCSGEDVQAWSTLSESTLSPKTEDESVSLRLCQVCG-LHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAK-----------DVKRDKVLPI 635 YTTTM N +SP+ D + + + + + P S + ++ S++ K LC VCG +G H Y CE C+ FFRRSV + Y CK AC++D RR C CR +KCL GM P+ ++ + + +KR+ K+A+ K K R ++LPI Sbjct: 229 YTTTMSNGYSSPMSTGSYDPYSPNGKMGREDLSPSS--SLNGYTDGSDAKKQKKGPTPRQQEELCLVCGDRESGYH--YNALTCEGCKGFFRRSVTKNA--VYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNATVSTTNSTYRSEILPI 403 HSP 2 Score: 60.8474 bits (146), Expect = 4.079e-8 Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 0 Query: 123 PTQTLPKCPICSN-SAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQ----RKERILQRYGSK 220 P Q C +C + +G H Y A TC C+GFFRRSV + ++ C C +D + C+ CR +KCL GM+P V + Q RKE+ Q+ K Sbjct: 284 PRQQEELCLVCGDRESGYH--YNALTCEGCKGFFRRSVTK--NAVYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDK 382
BLAST of retinoid x vs. SwissProt
Match: gi|160221327|sp|P79387.3|STF1_PIG (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP) HSP 1 Score: 81.6481 bits (200), Expect = 6.164e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237 CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.4034 bits (176), Expect = 5.273e-12 Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAK 625 LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK + Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQ 108
BLAST of retinoid x vs. SwissProt
Match: gi|416584|sp|Q04752.1|STF1_BOVIN (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP) HSP 1 Score: 81.6481 bits (200), Expect = 7.229e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237 CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.4034 bits (176), Expect = 6.509e-12 Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLK 623 LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALK 106
BLAST of retinoid x vs. SwissProt
Match: gi|1703164|sp|P50569.1|STF1_RAT (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP) HSP 1 Score: 81.6481 bits (200), Expect = 7.267e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237 CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.7886 bits (177), Expect = 4.325e-12 Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAK 625 LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK + Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQ 108
BLAST of retinoid x vs. SwissProt
Match: gi|341942103|sp|P33242.3|STF1_MOUSE (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Embryonal LTR-binding protein; Short=ELP; AltName: Full=Embryonal long terminal repeat-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP; AltName: Full=Steroid hydroxylase positive regulator) HSP 1 Score: 81.6481 bits (200), Expect = 7.331e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237 CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.7886 bits (177), Expect = 4.441e-12 Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAK 625 LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK + Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQ 108
BLAST of retinoid x vs. SwissProt
Match: gi|49036491|sp|Q95L87.1|STF1_MACEU (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Nuclear receptor subfamily 5 group A member 1) HSP 1 Score: 81.6481 bits (200), Expect = 7.434e-15 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212 CP+C + + +YG TC SC+GFF+R+VQN H + CT S NC ID K C +CR+QKCL GM+ V++ R R Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQNCKIDKTQRKRCPYCRFQKCLTVGMRLEAVRADRMRGGR 92 HSP 2 Score: 71.633 bits (174), Expect = 1.211e-11 Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAKDVKRDKVLPISRGLDFE 642 LC VCG + +YG CESC+ FF+R+VQN + Y C S C ID R+ C CR++KCL GM + + +D R + + +KR + LK ++ K L + G E Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQNCKIDKTQRKRCPYCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALK----QQKKALIRANGFKLE 121
BLAST of retinoid x vs. SwissProt
Match: gi|3121738|sp|Q13285.2|STF1_HUMAN (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; Short=hSF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP) HSP 1 Score: 81.6481 bits (200), Expect = 7.829e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237 CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.7886 bits (177), Expect = 4.958e-12 Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLK 623 LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALK 106
BLAST of retinoid x vs. SwissProt
Match: gi|44889025|sp|P49867.2|FTZF1_BOMMO (RecName: Full=Nuclear hormone receptor FTZ-F1; AltName: Full=BmFTZ-F1; AltName: Full=Nuclear receptor subfamily 5 group A member 3) HSP 1 Score: 82.0333 bits (201), Expect = 8.041e-15 Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 0 Query: 498 IDPCSGEDVQAWSTL-SESTLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER 610 +DP +G + + L + T+ +T+ + V LC VCG + +YG CESC+ FF+R+VQN+ Y C A AC ID R+ C CR++KCL+ GM + + +D R Sbjct: 55 VDPTTGTGGEPGAYLPTAGTVCDQTDTKDVIEELCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNKK--VYTCVAERACHIDKTQRKRCPFCRFQKCLDVGMKLEAVRADRMR 165 HSP 2 Score: 78.9518 bits (193), Expect = 6.584e-14 Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212 CP+C + + +YG TC SC+GFF+R+VQN+ ++ C C ID K C FCR+QKCL GMK V++ R R Sbjct: 89 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNKK--VYTCVAERACHIDKTQRKRCPFCRFQKCLDVGMKLEAVRADRMRGGR 168
BLAST of retinoid x vs. SwissProt
Match: gi|12230057|sp|Q9YH33.1|ESR1_ORENI (RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha; AltName: Full=Estradiol receptor; AltName: Full=Nuclear receptor subfamily 3 group A member 1) HSP 1 Score: 81.6481 bits (200), Expect = 1.036e-14 Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 529 RLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRA--KVLKAKDVKRDKVLP 634 R C VC +A + +YG CE C+AFF+RS+Q + YMC A+ C ID R+SC CR KC E GM + D R ++RE +RA + AKD+ + P Sbjct: 137 RFCAVCSDYASGY-HYGVWSCEGCKAFFKRSIQGHN--DYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGMRKDRGRVLRREKRRACDRDKPAKDLPHTRASP 241 HSP 2 Score: 65.855 bits (159), Expect = 9.850e-10 Identity = 32/97 (32.99%), Postives = 51/97 (52.58%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQ 226 C +CS+ A + +YG +C C+ FF+RS+Q H + C + CTID KSC+ CR +KC + GM ++ R R +R + +P + Sbjct: 139 CAVCSDYASGY-HYGVWSCEGCKAFFKRSIQG--HNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGMRKDRGRVLRREKRRACDRDKPAK 232
BLAST of retinoid x vs. nr
Match: gi|1325258266|ref|XP_023325470.1| (uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258271|ref|XP_023325479.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258277|ref|XP_023325484.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258282|ref|XP_023325492.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258289|ref|XP_023325500.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258292|ref|XP_023325508.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258296|ref|XP_023325515.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258300|ref|XP_023325523.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258306|ref|XP_023325531.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258311|ref|XP_023325539.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258315|ref|XP_023325547.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258319|ref|XP_023325554.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258329|ref|XP_023325561.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258334|ref|XP_023325570.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258338|ref|XP_023325578.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258342|ref|XP_023325585.1| uncharacterized protein LOC111699122 [Eurytemora affinis]) HSP 1 Score: 107.071 bits (266), Expect = 5.095e-20 Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 0 Query: 123 PTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212 PT+ KC IC+ A KH +YGA TC SCR FFRRS+QN+ + C S NC I+ ++ K+C+FCRYQKCL GMK +V S+E+R+ R Sbjct: 37 PTE---KCKICNEPAAKHIHYGAMTCFSCRAFFRRSIQNKTANSYTCRRSQNCEINLRTRKNCQFCRYQKCLSVGMKTNWVLSEEERQRR 123 HSP 2 Score: 102.449 bits (254), Expect = 1.118e-18 Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 0 Query: 531 CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER----RVKREHKRAKVLKAKDVKRD 630 C++C A KH +YG C SCRAFFRRS+QN++ +Y C+ S C+I+ ++R++C CRY+KCL GM W++S+EER R RE A L + D Sbjct: 41 CKICNEPAAKHIHYGAMTCFSCRAFFRRSIQNKTANSYTCRRSQNCEINLRTRKNCQFCRYQKCLSVGMKTNWVLSEEERQRRFRKVRERHEANDLPQNHMPED 144
BLAST of retinoid x vs. nr
Match: gi|1325280017|ref|XP_023324670.1| (uncharacterized protein LOC111698547 [Eurytemora affinis]) HSP 1 Score: 103.219 bits (256), Expect = 3.823e-19 Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSV--QNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVK----REHKRAKVLKAKDVKRDKV--LPISRG 638 LC++CG A +H +YGG C SC+AFFRR+V Q ++ T+ CK C+I+ K+R++C CR++KC+ GMNP W++SD++R+ + RE ++D R+ LP+ RG Sbjct: 40 LCRICGDGAVRHVHYGGHCCFSCKAFFRRAVNWQTKNKRTFQCKFESGCEINIKNRKTCQSCRFQKCITTGMNPSWVLSDDQRKKRFKKYRETGELSPTSSQDSSREGELDLPLERG 156 HSP 2 Score: 87.8113 bits (216), Expect = 3.056e-14 Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSV--QNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERI 213 C IC + A +H +YG C SC+ FFRR+V Q ++ F+C C I+ K+ K+C+ CR+QKC+ GM P++V S +QRK+R Sbjct: 41 CRICGDGAVRHVHYGGHCCFSCKAFFRRAVNWQTKNKRTFQCKFESGCEINIKNRKTCQSCRFQKCITTGMNPSWVLSDDQRKKRF 126
BLAST of retinoid x vs. nr
Match: gi|1216632039|gb|ASL70531.1| (nuclear receptor [Brachionus calyciflorus]) HSP 1 Score: 101.679 bits (252), Expect = 1.783e-18 Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 0 Query: 531 CQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVK----REHKRAKVLKAKDVKRD 630 C VCG + G H +GG CESC+AFFRRSVQ + Y C SG C +++ +R+ C CRY+ CL GM PKW++SD+ER K R++K+ + ++ +VK + Sbjct: 122 CHVCGDKSTGSH--FGGISCESCKAFFRRSVQKNRHEDYKCSYSGECKMNTNTRKICQFCRYKTCLSIGMRPKWVLSDDERHQKYGNRRKNKQKQEVQEAEVKEE 224 HSP 2 Score: 92.0485 bits (227), Expect = 1.647e-15 Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 0 Query: 129 KCPICSN-SAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQ 226 KC +C + S G H +G +C SC+ FFRRSVQ H +KC+ SG C +++ + K C+FCRY+ CL GM+P +V S ++R ++ R +K+ Q Q Sbjct: 121 KCHVCGDKSTGSH--FGGISCESCKAFFRRSVQKNRHEDYKCSYSGECKMNTNTRKICQFCRYKTCLSIGMRPKWVLSDDERHQKYGNRRKNKQKQEVQ 217
BLAST of retinoid x vs. nr
Match: gi|657600352|gb|AID52837.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 100.523 bits (249), Expect = 1.928e-18 Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 0 Query: 515 STLSPKTEDESVSLRL-----CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRA 619 ST +P T+ + S ++ C+VC A +H +YG VC SC+AFFRR++QN Y + C G C+++S SR+ C CR+E CL+ GMN W++S EER + +R Sbjct: 15 STSAPTTKSKKASSQVEFSEKCRVCKEPATRHLHYGAIVCFSCKAFFRRAIQNNVYKFFNCSVDGKCEMNSISRKHCQKCRWEACLKVGMNANWVLSKEERLDRLNRRRV 124 HSP 2 Score: 93.9745 bits (232), Expect = 2.565e-16 Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 0 Query: 129 KCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKS 222 KC +C A +H +YGA C SC+ FFRR++QN + F C+ G C ++S S K C+ CR++ CL+ GM +V S+E+R +R+ +R S+ S Sbjct: 35 KCRVCKEPATRHLHYGAIVCFSCKAFFRRAIQNNVYKFFNCSVDGKCEMNSISRKHCQKCRWEACLKVGMNANWVLSKEERLDRLNRRRVSQVS 128
BLAST of retinoid x vs. nr
Match: gi|1216632197|gb|ASL70610.1| (nuclear receptor [Brachionus sp. 'koreanus']) HSP 1 Score: 101.293 bits (251), Expect = 2.243e-18 Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = 0 Query: 531 CQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVK----REHKRAKVLKAKDVKRDK 631 C VCG + G H +GG CESC+AFFRRSVQ + Y C SG C +++ +R+ C CRY+ CL GM PKW++SD+ER K R++K+ + + D +D+ Sbjct: 112 CHVCGDKSTGSH--FGGISCESCKAFFRRSVQKNRFEDYKCSYSGECKMNTNTRKICQFCRYKTCLSIGMRPKWVLSDDERHQKYGNRRKNKQKQEIAEADSNKDE 215 HSP 2 Score: 87.8113 bits (216), Expect = 3.619e-14 Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 0 Query: 129 KCPICSN-SAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQ 223 KC +C + S G H +G +C SC+ FFRRSVQ +KC+ SG C +++ + K C+FCRY+ CL GM+P +V S ++R ++ R +K+ Q Sbjct: 111 KCHVCGDKSTGSH--FGGISCESCKAFFRRSVQKNRFEDYKCSYSGECKMNTNTRKICQFCRYKTCLSIGMRPKWVLSDDERHQKYGNRRKNKQKQ 204
BLAST of retinoid x vs. nr
Match: gi|657600360|gb|AID52841.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 100.138 bits (248), Expect = 3.471e-18 Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 0 Query: 531 CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAK 620 C VCG A H +YGG C SCRAFFRRSV Y TY C +S C + +R++C CR++KC+EAGM W++SDEE+ + E KR++ Sbjct: 122 CHVCGDRAPNHCHYGGIACFSCRAFFRRSVPK--YDTYTCSSSSNCVVTPATRKNCQKCRFDKCVEAGMKASWVLSDEEKLERLEKKRSR 209 HSP 2 Score: 85.5001 bits (210), Expect = 1.514e-13 Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQ 223 C +C + A H +YG C SCR FFRRSV + + C+ S NC + + K+C+ CR+ KC++AGMK ++V S E++ ER L++ S+K Q Sbjct: 122 CHVCGDRAPNHCHYGGIACFSCRAFFRRSVPK--YDTYTCSSSSNCVVTPATRKNCQKCRFDKCVEAGMKASWVLSDEEKLER-LEKKRSRKGQ 212
BLAST of retinoid x vs. nr
Match: gi|1216631975|gb|ASL70499.1| (nuclear receptor [Brachionus rotundiformis]) HSP 1 Score: 100.523 bits (249), Expect = 3.826e-18 Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0 Query: 531 CQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKR 618 C VCG + G H +GG CESC+AFFRRSVQ + Y C SG C +++ +R+ C CRY+ CL GM PKW++SD+ER K ++R Sbjct: 116 CHVCGDKSTGSH--FGGISCESCKAFFRRSVQKNRFEDYKCSYSGECKMNTNTRKICQFCRYKTCLSIGMRPKWVLSDDERHQKYGNRR 202 HSP 2 Score: 87.0409 bits (214), Expect = 6.462e-14 Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 0 Query: 129 KCPICSN-SAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKK 221 KC +C + S G H +G +C SC+ FFRRSVQ +KC+ SG C +++ + K C+FCRY+ CL GM+P +V S ++R Q+YG+++ Sbjct: 115 KCHVCGDKSTGSH--FGGISCESCKAFFRRSVQKNRFEDYKCSYSGECKMNTNTRKICQFCRYKTCLSIGMRPKWVLSDDERH----QKYGNRR 202
BLAST of retinoid x vs. nr
Match: gi|657600358|gb|AID52840.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 100.138 bits (248), Expect = 4.948e-18 Identity = 50/116 (43.10%), Postives = 74/116 (63.79%), Query Frame = 0 Query: 512 LSESTLSPKTEDESVS-LRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKD 626 L + T +TED S+ CQ+C A +H +YG C SC+AFFRR+ Q+++Y +MCK++G C++ K R+ C CRYEKC+ GM P ++SDEE ++KR K++ KA D Sbjct: 9 LDDGTSGMETEDVSMEPTEECQICQDPAIRHLHYGAITCFSCKAFFRRTSQSKAYQKFMCKSTGECNVLHKLRKKCRKCRYEKCIRVGMKPSLVLSDEE-KIKR-FKKSLSKKAMD 122 HSP 2 Score: 92.4337 bits (228), Expect = 1.455e-15 Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 0 Query: 129 KCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKS 222 +C IC + A +H +YGA TC SC+ FFRR+ Q++ + F C +G C + K K C+ CRY+KC++ GMKP+ V S E++ +R ++ SKK+ Sbjct: 28 ECQICQDPAIRHLHYGAITCFSCKAFFRRTSQSKAYQKFMCKSTGECNVLHKLRKKCRKCRYEKCIRVGMKPSLVLSDEEKIKR-FKKSLSKKA 120
BLAST of retinoid x vs. nr
Match: gi|1216632131|gb|ASL70577.1| (nuclear receptor [Brachionus plicatilis]) HSP 1 Score: 99.3673 bits (246), Expect = 9.235e-18 Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0 Query: 531 CQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKR 618 C VCG + G H +GG CESC+AFFRRSVQ + Y C SG C +++ +R+ C CRY+ CL GM PKW++SD+ER K ++R Sbjct: 125 CHVCGDKSTGSH--FGGISCESCKAFFRRSVQKNRFEDYKCSYSGECKMNTNTRKICQFCRYKTCLSVGMRPKWVLSDDERHQKYGNRR 211 HSP 2 Score: 87.0409 bits (214), Expect = 6.626e-14 Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 0 Query: 129 KCPICSN-SAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKK 221 KC +C + S G H +G +C SC+ FFRRSVQ +KC+ SG C +++ + K C+FCRY+ CL GM+P +V S ++R Q+YG+++ Sbjct: 124 KCHVCGDKSTGSH--FGGISCESCKAFFRRSVQKNRFEDYKCSYSGECKMNTNTRKICQFCRYKTCLSVGMRPKWVLSDDERH----QKYGNRR 211
BLAST of retinoid x vs. nr
Match: gi|1228381880|ref|XP_021952465.1| (steroid hormone receptor family member cnr14-like isoform X1 [Folsomia candida]) HSP 1 Score: 98.9821 bits (245), Expect = 2.123e-17 Identity = 93/395 (23.54%), Postives = 167/395 (42.28%), Query Frame = 0 Query: 525 SVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERR-------VKREHKRAKVLKAKDVKRDKVLPISRG------------LDFEFTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKAL------------FQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALM 888 S + ++C+VCG K ++GG C+SC+AFFRRSV ++ + C +C I ++R+SC CR+EKC+ GM KW++S+EER+ VK+ +K + V + G + ++ E I N + LN+M+ ++ + + + ++K +P +T E L F S + E +++ ED+ L++ ++ ++M L L+ +E N N+ L V + N + E F E H + + +IQ N DE V L++L ++F ++L + AKV + Q + +L +Y+ R+ K G K+ L+ Sbjct: 176 SKTAKICEVCG-DIAKSLHFGGLSCDSCKAFFRRSVHKDAHLQFSCGYDNSCHISKQTRKSCQKCRFEKCIRIGMEKKWVMSEEERKLLNYQREVKKINKSQAQHQQPQQGGSPVNGVGGGTSPSESSSEQSSSNIHHDSDPETPTEYIPNVDEM--LNYMSAEEQRNIREICEYYRIAYDK--IPYNVPKTTEGLRNTLQVIGMFTTILRRFAFFSKLVPEFRDLNREDQGNLLK---ASVLEMVM-----------LRGALSFDIENHRWPNTNLEFLKNCPQLRVQDMQ--NLVSPELF------------EMHMSFIKRIQ-------NLKVDEPTVMLLLLIVMFYPERSELEDVAKVNKAQEKYCELLSKYVNWRYG-KEGKKLYPKLL 529 HSP 2 Score: 77.411 bits (189), Expect = 8.528e-11 Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 0 Query: 122 RPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQR 216 R ++T C +C + A K ++G +C SC+ FFRRSV H F C +C I ++ KSC+ CR++KC++ GM+ +V S+E+RK QR Sbjct: 174 RNSKTAKICEVCGDIA-KSLHFGGLSCDSCKAFFRRSVHKDAHLQFSCGYDNSCHISKQTRKSCQKCRFEKCIRIGMEKKWVMSEEERKLLNYQR 267 The following BLAST results are available for this feature:
BLAST of retinoid x vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 24
Pagesback to top
BLAST of retinoid x vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
Pagesback to top
BLAST of retinoid x vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold42_size484952:476100..483829+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold42_size484952-snap-gene-3.25 ID=maker-scaffold42_size484952-snap-gene-3.25|Name=retinoid x|organism=Tigriopus kingsejongensis|type=gene|length=7730bp|location=Sequence derived from alignment at scaffold42_size484952:476100..483829+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'retinoid x' has the following synonyms
Add to Basket
|