retinoid x, maker-scaffold42_size484952-snap-gene-3.25 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 138.658 bits (348), Expect = 6.462e-35 Identity = 129/439 (29.38%), Postives = 197/439 (44.87%), Query Frame = 0 Query: 486 DQFIHDIL--SEDVIDPCSGEDVQAWSTLSESTLSPKTEDESVSL-------RLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYM-CKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELK-VMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKA-LFQGISMGLEEMT-EIDVEDRQTLVQENGSAFFALIMSLYSIPN-NFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVL--------KLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVF-------RSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895 D I++IL S+ S D + ++ L+ +TLS ED S + RLCQ+CG AGKH YYGGQ C SCRAFFRRSVQN SY ++ C + C I+ K+R++C CR++KC+ AGM W+ D ERR K+ A + +K P+ D E T E+ V I N L+++ + +D L D + +L+ + EK L ISMG + ED L Q N S + L SI N NF + ++L ++ ++ N N + N+ +E L P + Y TF LV++I V EN + +++L ++F + G K + ++R Q + ML RY + ++ +K+ K K +ML + E Sbjct: 56 DLLINEILYLSQSSDSFLSNADQENFNELNSTTLS---EDSSQIIIGRQALPRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSKKS--------AMTLNNNKP-PLPSFNDPEGLTSIEVSIVFTINNNLHKNFLDNLNTMVKRDSDFLIDFVDYLAFPTRSEYPYLKMAMSLEKIQLLSLISMGTSNSSLHFSQEDLYVLYQIN-SPKINIFRELSSIKNPNFPDI-DELINSV-RLLHLNNNETIQNLPSRVEFTLQHYLLNHDLCPNENDNYSTFLH---------------LVSQINSWVMDDENVIKQDKFSYIIMLFILFFDRTDSVKISGVKFKDPEMIDRAQLAYVQMLKRYFQRKYPRKSSKKFLKGIMLPSLIAE 464 HSP 2 Score: 97.0561 bits (240), Expect = 2.756e-21 Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 0 Query: 125 QTLPK-CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFK-CTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212 Q LP+ C IC AGKH YYG + C SCR FFRRSVQN + F C+ + +C I+ K+ K+C+ CR+QKC+ AGM+ ++V +R+ + Sbjct: 101 QALPRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSK 190
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22") HSP 1 Score: 124.405 bits (311), Expect = 2.849e-30 Identity = 115/413 (27.85%), Postives = 185/413 (44.79%), Query Frame = 0 Query: 510 STLSESTLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTY-MCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFE--FTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKALFQG-ISMGLEEMTEIDVEDRQTL--VQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTN-PNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRA-------------LVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSH-------GAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895 +TLSE + E++ RLCQ+CG AGKH YYGGQ C SCRAFFRRSVQN SY + C + C I+ ++R+SC CR++KC+ AGM W++ D ERR K K A +L P+ D T+ E V I N + +++ + ++ L D + +L + EK F ISMG R +L QE+ + LY I NF K+ + R + ++ TN P++ +++++ +L L N+ T + + + + H LV++I V + EN+ + +++ ++F G K + ++R Q + ML RY + R+ +K+ K K +ML + E Sbjct: 86 ATLSEPSSQIIIRREALP-RLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSK---KSAMILNNNT-------PLLPSFDDPGGLTSLEVSFVFTINNKLRKSFFDNVNSMVIRNSDFLIDFVDYLAFPARSEYPYLRMAMSLEKIQFLSFISMG---------TSRSSLHFSQED-------LYILYDI--NFPKI--NTFREVSSITTTNCPDI--DELINSVHLLHL--KNNETLQNLPSRIEFTIQHYILNHHLYPNENDNHSRFLHLVSQINSWVMNDENHTKKDKFSYIIMFFILFFDRTDSVTLSGVKFRDPELIDRAQLIYVQMLKRYFQRRYPRKSSKKFLKGIMLPSLIAE 463 HSP 2 Score: 97.4413 bits (241), Expect = 2.417e-21 Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 0 Query: 111 PHDTIIVSAEFRPTQTLPK-CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFK-CTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212 P II+ E LP+ C IC AGKH YYG + C SCR FFRRSVQN + F C+ + +C I+ ++ KSC+ CR+QKC+ AGM+ ++V +R+ + Sbjct: 91 PSSQIIIRRE-----ALPRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSK 189
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24") HSP 1 Score: 98.5969 bits (244), Expect = 8.282e-22 Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEE---RRVKREHKRAKVLKAKDVKRDKVLPIS 636 +C VCG A H +YGG C SCRAFFRRSV + TY C AC I +R++C CRY+KCLE+GM P W++S+EE R + + ++ K K+V + + ++ Sbjct: 90 VCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPKHT--TYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKYVRKNKTTCGKNVNNNNTIEVN 197 HSP 2 Score: 95.1301 bits (235), Expect = 1.364e-20 Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 0 Query: 122 RPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSK 220 +P T C +C + A H +YG C SCR FFRRSV H + C+ C I + K+C+FCRY+KCL++GMKP++V S+E++ R L +Y K Sbjct: 83 KPKMTEMVCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPK--HTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKYVRK 179
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 83.9593 bits (206), Expect = 5.003e-17 Identity = 39/93 (41.94%), Postives = 49/93 (52.69%), Query Frame = 0 Query: 122 RPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCT-----GSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQR 209 RP C IC + A H +YGA C SCR FF R+V F+C SG C I + C+FCRY+ CL AGM P+YV + E+R Sbjct: 129 RPEPMTDVCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221 HSP 2 Score: 78.5666 bits (192), Expect = 2.842e-15 Identity = 36/86 (41.86%), Postives = 47/86 (54.65%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMC-----KASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER 610 +C++CG A HN+YG C SCRAFF R+V + + C SG C I +R C CRY CL AGM P ++ + EER Sbjct: 136 VCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3") HSP 1 Score: 78.1814 bits (191), Expect = 3.285e-15 Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 0 Query: 99 LLSQEFFNSKPNPHDTIIVSAEFRPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSV--QNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYV 203 L S FF S+ T A+F T C ICS++A H +YGA C SCR FFRR+V ++H C+ C I ++ K C+FCR+ KCL+AGMK +V Sbjct: 35 LQSNMFFTSETMRTRTYKKRAKFIRKVT---CHICSDTANDHIHYGAIACXSCRAFFRRAVICNAEYH----CSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWV 134 HSP 2 Score: 78.1814 bits (191), Expect = 3.343e-15 Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 0 Query: 531 CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDV 627 C +C A H +YG C SCRAFFRR+V + Y C C I ++R+ C CR+ KCLEAGM W++S+ E+R K+E R K LKA+ + Sbjct: 63 CHICSDTANDHIHYGAIACXSCRAFFRRAVICNA--EYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVMSESEKREKKEKIRLKKLKAQQL 157
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6") HSP 1 Score: 77.0258 bits (188), Expect = 8.617e-15 Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212 CP+C + + +YG TC SC+GFF+R+VQN+ ++ C +C ID K C +CR+QKCL GMK V+ R R Sbjct: 186 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNKK--VYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGR 265 HSP 2 Score: 74.3294 bits (181), Expect = 7.119e-14 Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAKDVKRDKVL 633 LC VCG + +YG CESC+ FF+R+VQN+ Y C A +C ID R+ C CR++KCL+ GM + + D R + + +KR + K + +++ +V+ Sbjct: 185 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNKK--VYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGRNKFGPMYKRDRARKLQVLRQRQVI 289
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0") HSP 1 Score: 73.9442 bits (180), Expect = 6.715e-14 Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 0 Query: 506 VQAWSTLSESTLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE 615 VQ +S + E+ K + LC VCG A + +Y CE C+ FFRRS+ S Y CK +G C+ID RR C CR +KC GM + ++ + KR+ Sbjct: 148 VQQYSQMVENERKKKGSSSRPAEELCLVCGDRASGY-HYNALACEGCKGFFRRSITKNS--NYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQKRQ 254 HSP 2 Score: 62.7734 bits (151), Expect = 2.742e-10 Identity = 57/228 (25.00%), Postives = 103/228 (45.18%), Query Frame = 0 Query: 122 RPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQE---QRKERILQRYGSK--------KSQPNQINGSMKLQMHAV---MAGT--FTVEEHQCL--FGWYQKWHDFGASKSLDYFCDHVGVFQAILESSYEGKPMSNSAFRSMTKA---DEYVIVSYYFNEEEIQNLHFDDRMTLI 328 RP + L C +C + A + +Y A C C+GFFRRS+ + + C +G+C ID + C+ CR +KC GM+ V + Q+++ + KS N NGS+ + M + ++ T EE + + ++Q+ ++ + L+ V+ + S+ + S+ FR MT+ +IV + + QNL DD++ L+ Sbjct: 167 RPAEEL--CLVCGDRASGY-HYNALACEGCKGFFRRSITKNSN--YTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQKRQAKAAAAAAAXXDTTVDPKSNNNGKNGSISIDMASFPKRLSSTKPLKPEEEELINRLVYFQEEYEHPSEADLNR------VYHVPMHSTNSSESESDRLFRHMTEMTILTVQLIVEFSKHLPGFQNLCRDDQINLL 383
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53") HSP 1 Score: 73.559 bits (179), Expect = 1.634e-13 Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 0 Query: 122 RPTQTLPKCPICSNSA-GKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQ 204 +P Q+L C IC + A G H YG TC C+GFF+R+VQN+ I+ C G C I+ C++CR+QKCLQ GM A V+ Sbjct: 276 QPQQSL-VCMICEDRATGLH--YGIITCEGCKGFFKRTVQNKR--IYTCVADGECEINKAQRNRCQYCRFQKCLQKGMVLAAVR 354 HSP 2 Score: 67.0106 bits (162), Expect = 1.507e-11 Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 0 Query: 530 LCQVC-----GLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGM 599 +C +C GLH YG CE C+ FF+R+VQN+ Y C A G C+I+ R C CR++KCL+ GM Sbjct: 282 VCMICEDRATGLH------YGIITCEGCKGFFKRTVQNKRI--YTCVADGECEINKAQRNRCQYCRFQKCLQKGM 348
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13") HSP 1 Score: 72.7886 bits (177), Expect = 1.745e-13 Identity = 38/115 (33.04%), Postives = 68/115 (59.13%), Query Frame = 0 Query: 126 TLPKCPICSNSA-GKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVM 239 + C +C + A GKH YGA +C C+GFFRRSV+ + ++ C + C ++ +C++CR + C++AGMK + VQ++ ++RI R KK+ +N + +L + A++ Sbjct: 147 NIQNCAVCGDRATGKH--YGAASCDGCKGFFRRSVRKER--VYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNE---RDRISCR---KKTSAKDMNSANELTVTALL 251 HSP 2 Score: 67.0106 bits (162), Expect = 1.153e-11 Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 0 Query: 531 CQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAK 620 C VCG A GKH YG C+ C+ FFRRSV+ + Y C+ + AC ++ R +C CR + C++AGM + ++ +R R+ AK Sbjct: 151 CAVCGDRATGKH--YGAASCDGCKGFFRRSVRKER--VYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDRISCRKKTSAK 237
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10") HSP 1 Score: 72.0182 bits (175), Expect = 3.085e-13 Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 0 Query: 500 PCSGEDVQAWSTLSESTLSPK--TEDESVSLRLCQVCG-LHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKR 618 P D S+ SE+ L + ++E R C VCG + +G H YG CE+C+AFF+R++Q Y AS C+I+ + R++C CR++KCL GM + + D R +++++R Sbjct: 238 PPGSPDHHLCSSTSETNLFSRDIIKEEEGQRRTCLVCGDIASGFH--YGVSSCEACKAFFKRTIQGNI--EYTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGRQKYRR 355 HSP 2 Score: 56.6102 bits (135), Expect = 1.857e-8 Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRY 217 C +C + A +YG +C +C+ FF+R++Q + S C I+ + K+C+ CR+QKCL+ GM V+ R R Q+Y Sbjct: 271 CLVCGDIASGF-HYGVSSCEACKAFFKRTIQGNIE--YTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGR--QKY 353
BLAST of retinoid x vs. SwissProt
Match: gi|6016234|sp|P79926.1|HNF4B_XENLA (RecName: Full=Hepatocyte nuclear factor 4-beta; Short=HNF-4-beta; AltName: Full=Nuclear receptor subfamily 2 group A member 3) HSP 1 Score: 82.8037 bits (203), Expect = 2.374e-15 Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = 0 Query: 85 PDLSEFMDEQTIMDLLSQEFFNSKPNPHDTIIVSAEFRPTQTLPK-----CPICSNSA-GKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQM 235 PD +E +D M EF + + P +T I++ E L C IC + A GKH YGA +C C+GFFRRSV+ H ++ C S C +D C++CR +KC +AGMK VQ++ ++RI R S + NGS+ + + Sbjct: 4 PDYTETLDSSYTM----LEFDSIRVLPSNTEIITVETASPGLLNNGINSFCAICGDRATGKH--YGASSCDGCKGFFRRSVRKNH--VYACRFSRQCIVDKDKRNQCRYCRLRKCFRAGMKKEAVQNE---RDRISMRRSSYED-----NGSLSINV 144 HSP 2 Score: 66.2402 bits (160), Expect = 4.933e-10 Identity = 35/100 (35.00%), Postives = 51/100 (51.00%), Query Frame = 0 Query: 512 LSESTLSPKTEDESVSLRLCQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER 610 ++ T SP + ++ C +CG A GKH YG C+ C+ FFRRSV+ Y C+ S C +D R C CR KC AGM + + ++ +R Sbjct: 32 ITVETASPGLLNNGIN-SFCAICGDRATGKH--YGASSCDGCKGFFRRSVRKNH--VYACRFSRQCIVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDR 126
BLAST of retinoid x vs. SwissProt
Match: gi|205371750|sp|P49880.2|ECR_AEDAE (RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone receptor; Short=20E receptor; AltName: Full=EcRH; Short=AaEcR; AltName: Full=Ecdysteroid receptor; AltName: Full=Nuclear receptor subfamily 1 group H member 1) HSP 1 Score: 83.9593 bits (206), Expect = 2.885e-15 Identity = 57/181 (31.49%), Postives = 86/181 (47.51%), Query Frame = 0 Query: 468 YTTTMINFDTSPLEALITDQF-IHDILSEDVIDPCSGEDVQAWSTLSESTLSPKTEDESVSLRLCQVCG-LHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAK-----------DVKRDKVLPI 635 YTTTM N +SP+ D + + + + + P S + ++ S++ K LC VCG +G H Y CE C+ FFRRSV + Y CK AC++D RR C CR +KCL GM P+ ++ + + +KR+ K+A+ K K R ++LPI Sbjct: 229 YTTTMSNGYSSPMSTGSYDPYSPNGKMGREDLSPSS--SLNGYTDGSDAKKQKKGPTPRQQEELCLVCGDRESGYH--YNALTCEGCKGFFRRSVTKNA--VYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNATVSTTNSTYRSEILPI 403 HSP 2 Score: 60.8474 bits (146), Expect = 4.079e-8 Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 0 Query: 123 PTQTLPKCPICSN-SAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQ----RKERILQRYGSK 220 P Q C +C + +G H Y A TC C+GFFRRSV + ++ C C +D + C+ CR +KCL GM+P V + Q RKE+ Q+ K Sbjct: 284 PRQQEELCLVCGDRESGYH--YNALTCEGCKGFFRRSVTK--NAVYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDK 382
BLAST of retinoid x vs. SwissProt
Match: gi|160221327|sp|P79387.3|STF1_PIG (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP) HSP 1 Score: 81.6481 bits (200), Expect = 6.164e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237 CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.4034 bits (176), Expect = 5.273e-12 Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAK 625 LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK + Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQ 108
BLAST of retinoid x vs. SwissProt
Match: gi|416584|sp|Q04752.1|STF1_BOVIN (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP) HSP 1 Score: 81.6481 bits (200), Expect = 7.229e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237 CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.4034 bits (176), Expect = 6.509e-12 Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLK 623 LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALK 106
BLAST of retinoid x vs. SwissProt
Match: gi|1703164|sp|P50569.1|STF1_RAT (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP) HSP 1 Score: 81.6481 bits (200), Expect = 7.267e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237 CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.7886 bits (177), Expect = 4.325e-12 Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAK 625 LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK + Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQ 108
BLAST of retinoid x vs. SwissProt
Match: gi|341942103|sp|P33242.3|STF1_MOUSE (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Embryonal LTR-binding protein; Short=ELP; AltName: Full=Embryonal long terminal repeat-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP; AltName: Full=Steroid hydroxylase positive regulator) HSP 1 Score: 81.6481 bits (200), Expect = 7.331e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237 CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.7886 bits (177), Expect = 4.441e-12 Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAK 625 LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK + Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQ 108
BLAST of retinoid x vs. SwissProt
Match: gi|49036491|sp|Q95L87.1|STF1_MACEU (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Nuclear receptor subfamily 5 group A member 1) HSP 1 Score: 81.6481 bits (200), Expect = 7.434e-15 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212 CP+C + + +YG TC SC+GFF+R+VQN H + CT S NC ID K C +CR+QKCL GM+ V++ R R Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQNCKIDKTQRKRCPYCRFQKCLTVGMRLEAVRADRMRGGR 92 HSP 2 Score: 71.633 bits (174), Expect = 1.211e-11 Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAKDVKRDKVLPISRGLDFE 642 LC VCG + +YG CESC+ FF+R+VQN + Y C S C ID R+ C CR++KCL GM + + +D R + + +KR + LK ++ K L + G E Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQNCKIDKTQRKRCPYCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALK----QQKKALIRANGFKLE 121
BLAST of retinoid x vs. SwissProt
Match: gi|3121738|sp|Q13285.2|STF1_HUMAN (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; Short=hSF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP) HSP 1 Score: 81.6481 bits (200), Expect = 7.829e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237 CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.7886 bits (177), Expect = 4.958e-12 Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 0 Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLK 623 LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALK 106
BLAST of retinoid x vs. SwissProt
Match: gi|44889025|sp|P49867.2|FTZF1_BOMMO (RecName: Full=Nuclear hormone receptor FTZ-F1; AltName: Full=BmFTZ-F1; AltName: Full=Nuclear receptor subfamily 5 group A member 3) HSP 1 Score: 82.0333 bits (201), Expect = 8.041e-15 Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 0 Query: 498 IDPCSGEDVQAWSTL-SESTLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER 610 +DP +G + + L + T+ +T+ + V LC VCG + +YG CESC+ FF+R+VQN+ Y C A AC ID R+ C CR++KCL+ GM + + +D R Sbjct: 55 VDPTTGTGGEPGAYLPTAGTVCDQTDTKDVIEELCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNKK--VYTCVAERACHIDKTQRKRCPFCRFQKCLDVGMKLEAVRADRMR 165 HSP 2 Score: 78.9518 bits (193), Expect = 6.584e-14 Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212 CP+C + + +YG TC SC+GFF+R+VQN+ ++ C C ID K C FCR+QKCL GMK V++ R R Sbjct: 89 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNKK--VYTCVAERACHIDKTQRKRCPFCRFQKCLDVGMKLEAVRADRMRGGR 168
BLAST of retinoid x vs. SwissProt
Match: gi|12230057|sp|Q9YH33.1|ESR1_ORENI (RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha; AltName: Full=Estradiol receptor; AltName: Full=Nuclear receptor subfamily 3 group A member 1) HSP 1 Score: 81.6481 bits (200), Expect = 1.036e-14 Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 529 RLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRA--KVLKAKDVKRDKVLP 634 R C VC +A + +YG CE C+AFF+RS+Q + YMC A+ C ID R+SC CR KC E GM + D R ++RE +RA + AKD+ + P Sbjct: 137 RFCAVCSDYASGY-HYGVWSCEGCKAFFKRSIQGHN--DYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGMRKDRGRVLRREKRRACDRDKPAKDLPHTRASP 241 HSP 2 Score: 65.855 bits (159), Expect = 9.850e-10 Identity = 32/97 (32.99%), Postives = 51/97 (52.58%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQ 226 C +CS+ A + +YG +C C+ FF+RS+Q H + C + CTID KSC+ CR +KC + GM ++ R R +R + +P + Sbjct: 139 CAVCSDYASGY-HYGVWSCEGCKAFFKRSIQG--HNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGMRKDRGRVLRREKRRACDRDKPAK 232
BLAST of retinoid x vs. nr
Match: gi|1228381882|ref|XP_021952466.1| (retinoic acid receptor beta-like isoform X2 [Folsomia candida]) HSP 1 Score: 98.9821 bits (245), Expect = 2.204e-17 Identity = 91/395 (23.04%), Postives = 166/395 (42.03%), Query Frame = 0 Query: 525 SVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERR-------VKREHKRAKVLKAKDVKRDKVLPISRG------------LDFEFTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKAL------------FQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALM 888 S + ++C+VCG K ++GG C+SC+AFFRRSV ++ + C +C I ++R+SC CR+EKC+ GM KW++S+EER+ VK+ +K + V + G + ++ E I N + LN+M+ ++ + + + ++K +P +T E L F S + E +++ ED+ L++ ++ ++M L L+ +E N N+ L V + + + L E H + + +IQ N DE V L++L ++F ++L + AKV + Q + +L +Y+ R+ K G K+ L+ Sbjct: 164 SKTAKICEVCG-DIAKSLHFGGLSCDSCKAFFRRSVHKDAHLQFSCGYDNSCHISKQTRKSCQKCRFEKCIRIGMEKKWVMSEEERKLLNYQREVKKINKSQAQHQQPQQGGSPVNGVGGGTSPSESSSEQSSSNIHHDSDPETPTEYIPNVDEM--LNYMSAEEQRNIREICEYYRIAYDK--IPYNVPKTTEGLRNTLQVIGMFTTILRRFAFFSKLVPEFRDLNREDQGNLLK---ASVLEMVM-----------LRGALSFDIENHRWPNTNLEFLKNCPQLRVQDMQ--------------NLVSPELFEMHMSFIKRIQ-------NLKVDEPTVMLLLLIVMFYPERSELEDVAKVNKAQEKYCELLSKYVNWRYG-KEGKKLYPKLL 517 HSP 2 Score: 76.2554 bits (186), Expect = 1.922e-10 Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 0 Query: 122 RPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQR 216 R ++T C +C + A K ++G +C SC+ FFRRSV H F C +C I ++ KSC+ CR++KC++ GM+ +V S+E+RK QR Sbjct: 162 RNSKTAKICEVCGDIA-KSLHFGGLSCDSCKAFFRRSVHKDAHLQFSCGYDNSCHISKQTRKSCQKCRFEKCIRIGMEKKWVMSEEERKLLNYQR 255
BLAST of retinoid x vs. nr
Match: gi|1238896772|ref|XP_022235203.1| (vitamin D3 receptor-like [Limulus polyphemus]) HSP 1 Score: 96.6709 bits (239), Expect = 2.877e-17 Identity = 95/375 (25.33%), Postives = 156/375 (41.60%), Query Frame = 0 Query: 529 RLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER----RVKREHKRAKVLKAKDVKRDKVLPISRGLDF----EFTTEEELKVMQIRNYAKTCKLNHMA------LTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALML 889 ++C VCG A K ++GG C+SC+AFFRRSVQN+ Y + C G CDI SR+ C CR++KCL GM W++++EER R + E ++ + D R K D +F TE + V I + ++++ A LT+ T + D+ F TV + F + LE + I D+Q L++ +G + Y + + D +TL R +P +R ++ +SP TL E H V I+ PDE + L+++ ++ + L N V + Q + +L +Y+ R+ + + L L Sbjct: 29 KVCGVCGDRA-KSYHFGGISCDSCKAFFRRSVQNEGYKNFHCPYEGKCDITISSRKCCQYCRFQKCLAIGMEKGWVMTEEERLHLLRSRMEKRQRQGTTESDKPRRKTSVSDYDPDINEMGKFLTEND--VQDIESLITMYEVSYQAVGFSEKLTIQSSERSRTEIIDMFF-----------TVIKQ----FAHFAQNLEGFSVIPHSDQQVLLR-SGVMEMCFLRGAY-VFDERNGCWPDRRKTL---YRDSPPLRAEDIKKL-----VSP------------------TLFEKHMKFVIGIKEL-------DPDEPTIMLLLVTILLSPDRSNLENVDLVTKQQEKYYILLKKYMLWRYGPNHTAALYPKLFL 350 HSP 2 Score: 82.4185 bits (202), Expect = 1.167e-12 Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQ 223 C +C + A K ++G +C SC+ FFRRSVQN+ + F C G C I S K C++CR+QKCL GM+ +V ++E+R + R ++ Q Sbjct: 31 CGVCGDRA-KSYHFGGISCDSCKAFFRRSVQNEGYKNFHCPYEGKCDITISSRKCCQYCRFQKCLAIGMEKGWVMTEEERLHLLRSRMEKRQRQ 123
BLAST of retinoid x vs. nr
Match: gi|1325302227|ref|XP_023332665.1| (uncharacterized protein LOC111704608, partial [Eurytemora affinis]) HSP 1 Score: 97.0561 bits (240), Expect = 1.028e-16 Identity = 87/359 (24.23%), Postives = 162/359 (45.13%), Query Frame = 0 Query: 531 CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEE-----------RRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKF--------LETVENREKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRY 870 C VCG A H +YGG C SC+AFFRR+VQ+ Y+CK G C + +RR C CR+EKC E GM W++SDE+ R+ ++ K+ + V+ K P+ + ++ T +EL + + + K ++ +++ VLW +F + N + ++TV + + S ++D +D++ ++++N + L +L P + KK + + + P V DT ++ G FY +S +S + + ++ + S E+I+ L+ + ++F + G +L+ +E VQ+++ +LYRY Sbjct: 874 CNVCGDKAIAHMHYGGICCYSCKAFFRRAVQSGKDKKYLCKGEGHCPVSVHNRRGCQKCRFEKCQEIGMVSTWVLSDEQCEQRFGKSKLKRKGGYDYTPKKLKEEYTVQMHKHKPLD-DMFYKLTDTDELSIEYMSCVYEASK---EMISFSEEN---EVLWSKLFQESNAKKSYSSTEMSGLIQTVIKKNIFFLEANSY----FKKLDFDDKREILKKNMTEMGQLRGALRFDPRD-KKFVWYFNQ------KDKPKVAFHVNEDTKKIDADDLG------KFY----KSKDAVSSVMKTMERIVREQLSS-------EIILILMHV-VIFSADGLELNKPEFIENVQSSYFNLLYRY 1196 HSP 2 Score: 92.4337 bits (228), Expect = 2.679e-15 Identity = 87/363 (23.97%), Postives = 151/363 (41.60%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERI----LQRYGSKKSQPNQINGSMKLQMHAVMAGTFTVEEHQCLFGWYQKWHD------------FGASKSLDYFCDHVGVFQAIL------ESSYEGKPMSNSAFRSMTKADEYVIVSYYFNEEEIQNLHFDDRMTLIARNFAVLYGLLWGSFSTLDDPDAQMQTYFDFCLRNAANNPR--YHSLLDLWQNFVDNGKRVSPYHCGLIQRDSFPDSLKYRQYINDTEKIGSVMASDNALDAILMIILNYICFYSTDFPDQLREGEKIKTKQNNYLALLHRY 468 C +C + A H +YG C SC+ FFRR+VQ+ + C G G+C + + + C+ CR++KC + GM +V S EQ ++R L+R G P ++ +QMH +H+ L + K D + ASK + F + V + L + SY MS + K ++ + YF + L FDD+ ++ +N + G L G+ D D + YF N + P+ +H D + I D K + ++ K + + I++I+++ + F + +L + E I+ Q++Y LL+RY Sbjct: 874 CNVCGDKAIAHMHYGGICCYSCKAFFRRAVQSGKDKKYLCKGEGHCPVSVHNRRGCQKCRFEKCQEIGMVSTWVLSDEQCEQRFGKSKLKRKGGYDYTPKKLKEEYTVQMH----------KHKPLDDMFYKLTDTDELSIEYMSCVYEASKEMISFSEENEVLWSKLFQESNAKKSYSSTEMSGLIQTVIKKNIFFLEANSYF-----KKLDFDDKREILKKNMTEM-GQLRGAL-RFDPRDKKFVWYF-----NQKDKPKVAFHVNEDTKK----------------IDADDLGKFYKSKDAVSSVMKTMERIVREQLSSEIILILMHVVIFSADGL--ELNKPEFIENVQSSYFNLLYRY 1196
BLAST of retinoid x vs. nr
Match: gi|1067097359|ref|XP_018010669.1| (PREDICTED: uncharacterized protein LOC108668052 [Hyalella azteca]) HSP 1 Score: 97.0561 bits (240), Expect = 1.169e-16 Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 0 Query: 515 STLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKA 624 S +SP E L+ C VCG K N++GG+ C+SC+AFFRRSVQN +Y + C C I SR++C CR+ KCL GM W++S+ ERR E ++ + + A Sbjct: 109 SPISPG-EGRRGELKQCGVCG-DVAKSNHFGGRSCDSCKAFFRRSVQNNAYRGFNCPYEKKCVIAKTSRKACQYCRFHKCLAIGMEKSWVMSEAERRKMMEQRQERRIAA 216 HSP 2 Score: 86.6557 bits (213), Expect = 1.464e-13 Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 0 Query: 75 RDNLPMGDSGPDLSEFMDEQTIM-------DLLSQEFFNSKPNPHDTIIVSAEFRPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQR 216 R NLP G D E++ ++ LS +F++ +P I E R + L +C +C + A K ++G R+C SC+ FFRRSVQN + F C C I S K+C++CR+ KCL GM+ ++V S+ +R++ + QR Sbjct: 68 RKNLPTGMES-DRVEYLGRESASLSPQGSNSALSPSYFDNPTSP----ISPGEGRRGE-LKQCGVCGDVA-KSNHFGGRSCDSCKAFFRRSVQNNAYRGFNCPYEKKCVIAKTSRKACQYCRFHKCLAIGMEKSWVMSEAERRKMMEQR 209
BLAST of retinoid x vs. nr
Match: gi|657600364|gb|AID52843.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 93.9745 bits (232), Expect = 2.257e-16 Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 0 Query: 526 VSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAK 625 + + C VCG A H +YG C SCRAFFRRSV N+++ Y C + C + ++R+ C CR++KC++ GM P W+++++ER+ RAK+LK K Sbjct: 55 IRIVACSVCGDIANDHVHYGAIACYSCRAFFRRSVSNEAH--YECSRNSKCPVTKETRKHCQSCRFKKCIDIGMKPSWVMTEDERK----DNRAKILKKK 148 HSP 2 Score: 87.8113 bits (216), Expect = 2.790e-14 Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = 0 Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKE---RILQR 216 C +C + A H +YGA C SCR FFRRSV N+ H ++C+ + C + ++ K C+ CR++KC+ GMKP++V ++++RK+ +IL++ Sbjct: 60 CSVCGDIANDHVHYGAIACYSCRAFFRRSVSNEAH--YECSRNSKCPVTKETRKHCQSCRFKKCIDIGMKPSWVMTEDERKDNRAKILKK 147 The following BLAST results are available for this feature:
BLAST of retinoid x vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 24
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BLAST of retinoid x vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of retinoid x vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold42_size484952:476100..483829+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold42_size484952-snap-gene-3.25 ID=maker-scaffold42_size484952-snap-gene-3.25|Name=retinoid x|organism=Tigriopus kingsejongensis|type=gene|length=7730bp|location=Sequence derived from alignment at scaffold42_size484952:476100..483829+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'retinoid x' has the following synonyms
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