BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19")

HSP 1 Score: 138.658 bits (348), Expect = 6.462e-35
Identity = 129/439 (29.38%), Postives = 197/439 (44.87%), Query Frame = 0

Query:  486 DQFIHDIL--SEDVIDPCSGEDVQAWSTLSESTLSPKTEDESVSL-------RLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYM-CKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELK-VMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKA-LFQGISMGLEEMT-EIDVEDRQTLVQENGSAFFALIMSLYSIPN-NFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVL--------KLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVF-------RSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895
            D  I++IL  S+      S  D + ++ L+ +TLS   ED S  +       RLCQ+CG  AGKH YYGGQ C SCRAFFRRSVQN SY  ++ C  +  C I+ K+R++C  CR++KC+ AGM   W+  D ERR K+         A  +  +K  P+    D E  T  E+  V  I N      L+++   + +D   L    D +         +L+   + EK  L   ISMG    +     ED   L Q N S    +   L SI N NF  + ++L  ++ ++   N N  + N+   +E           L P  +  Y TF                 LV++I   V   EN    +    +++L ++F       +  G K  +   ++R Q  +  ML RY + ++ +K+  K  K +ML +   E
Sbjct:   56 DLLINEILYLSQSSDSFLSNADQENFNELNSTTLS---EDSSQIIIGRQALPRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSKKS--------AMTLNNNKP-PLPSFNDPEGLTSIEVSIVFTINNNLHKNFLDNLNTMVKRDSDFLIDFVDYLAFPTRSEYPYLKMAMSLEKIQLLSLISMGTSNSSLHFSQEDLYVLYQIN-SPKINIFRELSSIKNPNFPDI-DELINSV-RLLHLNNNETIQNLPSRVEFTLQHYLLNHDLCPNENDNYSTFLH---------------LVSQINSWVMDDENVIKQDKFSYIIMLFILFFDRTDSVKISGVKFKDPEMIDRAQLAYVQMLKRYFQRKYPRKSSKKFLKGIMLPSLIAE 464          

HSP 2 Score: 97.0561 bits (240), Expect = 2.756e-21
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 0

Query:  125 QTLPK-CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFK-CTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212
            Q LP+ C IC   AGKH YYG + C SCR FFRRSVQN  +  F  C+ + +C I+ K+ K+C+ CR+QKC+ AGM+ ++V    +R+ +
Sbjct:  101 QALPRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSK 190          

BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22")

HSP 1 Score: 124.405 bits (311), Expect = 2.849e-30
Identity = 115/413 (27.85%), Postives = 185/413 (44.79%), Query Frame = 0

Query:  510 STLSESTLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTY-MCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFE--FTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKALFQG-ISMGLEEMTEIDVEDRQTL--VQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTN-PNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRA-------------LVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSH-------GAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895
            +TLSE +       E++  RLCQ+CG  AGKH YYGGQ C SCRAFFRRSVQN SY  +  C  +  C I+ ++R+SC  CR++KC+ AGM   W++ D ERR K   K A +L           P+    D     T+ E   V  I N  +    +++   + ++   L    D +         +L    + EK  F   ISMG           R +L   QE+       +  LY I  NF K+  +  R +  ++ TN P++    +++++ +L L   N+ T +     +  + +     H               LV++I   V + EN+   +    +++  ++F          G K  +   ++R Q  +  ML RY + R+ +K+  K  K +ML +   E
Sbjct:   86 ATLSEPSSQIIIRREALP-RLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSK---KSAMILNNNT-------PLLPSFDDPGGLTSLEVSFVFTINNKLRKSFFDNVNSMVIRNSDFLIDFVDYLAFPARSEYPYLRMAMSLEKIQFLSFISMG---------TSRSSLHFSQED-------LYILYDI--NFPKI--NTFREVSSITTTNCPDI--DELINSVHLLHL--KNNETLQNLPSRIEFTIQHYILNHHLYPNENDNHSRFLHLVSQINSWVMNDENHTKKDKFSYIIMFFILFFDRTDSVTLSGVKFRDPELIDRAQLIYVQMLKRYFQRRYPRKSSKKFLKGIMLPSLIAE 463          

HSP 2 Score: 97.4413 bits (241), Expect = 2.417e-21
Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 0

Query:  111 PHDTIIVSAEFRPTQTLPK-CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFK-CTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212
            P   II+  E      LP+ C IC   AGKH YYG + C SCR FFRRSVQN  +  F  C+ + +C I+ ++ KSC+ CR+QKC+ AGM+ ++V    +R+ +
Sbjct:   91 PSSQIIIRRE-----ALPRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSK 189          

BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24")

HSP 1 Score: 98.5969 bits (244), Expect = 8.282e-22
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 0

Query:  530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEE---RRVKREHKRAKVLKAKDVKRDKVLPIS 636
            +C VCG  A  H +YGG  C SCRAFFRRSV   +  TY C    AC I   +R++C  CRY+KCLE+GM P W++S+EE   R + +  ++ K    K+V  +  + ++
Sbjct:   90 VCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPKHT--TYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKYVRKNKTTCGKNVNNNNTIEVN 197          

HSP 2 Score: 95.1301 bits (235), Expect = 1.364e-20
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 0

Query:  122 RPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSK 220
            +P  T   C +C + A  H +YG   C SCR FFRRSV    H  + C+    C I   + K+C+FCRY+KCL++GMKP++V S+E++  R L +Y  K
Sbjct:   83 KPKMTEMVCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPK--HTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKYVRK 179          

BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5")

HSP 1 Score: 83.9593 bits (206), Expect = 5.003e-17
Identity = 39/93 (41.94%), Postives = 49/93 (52.69%), Query Frame = 0

Query:  122 RPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCT-----GSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQR 209
            RP      C IC + A  H +YGA  C SCR FF R+V       F+C       SG C I   +   C+FCRY+ CL AGM P+YV + E+R
Sbjct:  129 RPEPMTDVCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221          

HSP 2 Score: 78.5666 bits (192), Expect = 2.842e-15
Identity = 36/86 (41.86%), Postives = 47/86 (54.65%), Query Frame = 0

Query:  530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMC-----KASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER 610
            +C++CG  A  HN+YG   C SCRAFF R+V   +   + C       SG C I   +R  C  CRY  CL AGM P ++ + EER
Sbjct:  136 VCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221          

BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3")

HSP 1 Score: 78.1814 bits (191), Expect = 3.285e-15
Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 0

Query:   99 LLSQEFFNSKPNPHDTIIVSAEFRPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSV--QNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYV 203
            L S  FF S+     T    A+F    T   C ICS++A  H +YGA  C SCR FFRR+V    ++H    C+    C I  ++ K C+FCR+ KCL+AGMK  +V
Sbjct:   35 LQSNMFFTSETMRTRTYKKRAKFIRKVT---CHICSDTANDHIHYGAIACXSCRAFFRRAVICNAEYH----CSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWV 134          

HSP 2 Score: 78.1814 bits (191), Expect = 3.343e-15
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 0

Query:  531 CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDV 627
            C +C   A  H +YG   C SCRAFFRR+V   +   Y C     C I  ++R+ C  CR+ KCLEAGM   W++S+ E+R K+E  R K LKA+ +
Sbjct:   63 CHICSDTANDHIHYGAIACXSCRAFFRRAVICNA--EYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVMSESEKREKKEKIRLKKLKAQQL 157          

BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6")

HSP 1 Score: 77.0258 bits (188), Expect = 8.617e-15
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 0

Query:  130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212
            CP+C +    + +YG  TC SC+GFF+R+VQN+   ++ C    +C ID    K C +CR+QKCL  GMK   V+    R  R
Sbjct:  186 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNKK--VYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGR 265          

HSP 2 Score: 74.3294 bits (181), Expect = 7.119e-14
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 0

Query:  530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAKDVKRDKVL 633
            LC VCG     + +YG   CESC+ FF+R+VQN+    Y C A  +C ID   R+ C  CR++KCL+ GM  + +  D  R  + +    +KR +  K + +++ +V+
Sbjct:  185 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNKK--VYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGRNKFGPMYKRDRARKLQVLRQRQVI 289          

BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0")

HSP 1 Score: 73.9442 bits (180), Expect = 6.715e-14
Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 0

Query:  506 VQAWSTLSESTLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE 615
            VQ +S + E+    K      +  LC VCG  A  + +Y    CE C+ FFRRS+   S   Y CK +G C+ID   RR C  CR +KC   GM  + ++ +     KR+
Sbjct:  148 VQQYSQMVENERKKKGSSSRPAEELCLVCGDRASGY-HYNALACEGCKGFFRRSITKNS--NYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQKRQ 254          

HSP 2 Score: 62.7734 bits (151), Expect = 2.742e-10
Identity = 57/228 (25.00%), Postives = 103/228 (45.18%), Query Frame = 0

Query:  122 RPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQE---QRKERILQRYGSK--------KSQPNQINGSMKLQMHAV---MAGT--FTVEEHQCL--FGWYQKWHDFGASKSLDYFCDHVGVFQAILESSYEGKPMSNSAFRSMTKA---DEYVIVSYYFNEEEIQNLHFDDRMTLI 328
            RP + L  C +C + A  + +Y A  C  C+GFFRRS+    +  + C  +G+C ID    + C+ CR +KC   GM+   V  +    Q+++       +         KS  N  NGS+ + M +    ++ T     EE + +    ++Q+ ++  +   L+       V+   + S+   +  S+  FR MT+       +IV +  +    QNL  DD++ L+
Sbjct:  167 RPAEEL--CLVCGDRASGY-HYNALACEGCKGFFRRSITKNSN--YTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQKRQAKAAAAAAAXXDTTVDPKSNNNGKNGSISIDMASFPKRLSSTKPLKPEEEELINRLVYFQEEYEHPSEADLNR------VYHVPMHSTNSSESESDRLFRHMTEMTILTVQLIVEFSKHLPGFQNLCRDDQINLL 383          

BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53")

HSP 1 Score: 73.559 bits (179), Expect = 1.634e-13
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 0

Query:  122 RPTQTLPKCPICSNSA-GKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQ 204
            +P Q+L  C IC + A G H  YG  TC  C+GFF+R+VQN+   I+ C   G C I+      C++CR+QKCLQ GM  A V+
Sbjct:  276 QPQQSL-VCMICEDRATGLH--YGIITCEGCKGFFKRTVQNKR--IYTCVADGECEINKAQRNRCQYCRFQKCLQKGMVLAAVR 354          

HSP 2 Score: 67.0106 bits (162), Expect = 1.507e-11
Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 0

Query:  530 LCQVC-----GLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGM 599
            +C +C     GLH      YG   CE C+ FF+R+VQN+    Y C A G C+I+   R  C  CR++KCL+ GM
Sbjct:  282 VCMICEDRATGLH------YGIITCEGCKGFFKRTVQNKRI--YTCVADGECEINKAQRNRCQYCRFQKCLQKGM 348          

BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13")

HSP 1 Score: 72.7886 bits (177), Expect = 1.745e-13
Identity = 38/115 (33.04%), Postives = 68/115 (59.13%), Query Frame = 0

Query:  126 TLPKCPICSNSA-GKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVM 239
             +  C +C + A GKH  YGA +C  C+GFFRRSV+ +   ++ C  +  C ++     +C++CR + C++AGMK + VQ++   ++RI  R   KK+    +N + +L + A++
Sbjct:  147 NIQNCAVCGDRATGKH--YGAASCDGCKGFFRRSVRKER--VYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNE---RDRISCR---KKTSAKDMNSANELTVTALL 251          

HSP 2 Score: 67.0106 bits (162), Expect = 1.153e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 0

Query:  531 CQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAK 620
            C VCG  A GKH  YG   C+ C+ FFRRSV+ +    Y C+ + AC ++   R +C  CR + C++AGM    + ++ +R   R+   AK
Sbjct:  151 CAVCGDRATGKH--YGAASCDGCKGFFRRSVRKER--VYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDRISCRKKTSAK 237          

BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10")

HSP 1 Score: 72.0182 bits (175), Expect = 3.085e-13
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 0

Query:  500 PCSGEDVQAWSTLSESTLSPK--TEDESVSLRLCQVCG-LHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKR 618
            P    D    S+ SE+ L  +   ++E    R C VCG + +G H  YG   CE+C+AFF+R++Q      Y   AS  C+I+ + R++C  CR++KCL  GM  + +  D  R  +++++R
Sbjct:  238 PPGSPDHHLCSSTSETNLFSRDIIKEEEGQRRTCLVCGDIASGFH--YGVSSCEACKAFFKRTIQGNI--EYTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGRQKYRR 355          

HSP 2 Score: 56.6102 bits (135), Expect = 1.857e-8
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0

Query:  130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRY 217
            C +C + A    +YG  +C +C+ FF+R++Q      +    S  C I+ +  K+C+ CR+QKCL+ GM    V+    R  R  Q+Y
Sbjct:  271 CLVCGDIASGF-HYGVSSCEACKAFFKRTIQGNIE--YTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGR--QKY 353          

BLAST of retinoid x vs. SwissProt
Match: gi|49066046|sp|Q14994.2|NR1I3_HUMAN (RecName: Full=Nuclear receptor subfamily 1 group I member 3; AltName: Full=Constitutive activator of retinoid response; Short=Constitutive active response; AltName: Full=Constitutive androstane receptor; Short=CAR; AltName: Full=Orphan nuclear receptor MB67)

HSP 1 Score: 78.1814 bits (191), Expect = 4.092e-14
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 0

Query:  522 EDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEE---RRVKREHKRAK 620
            EDE   LR C VCG  A  + ++    CE C+ FFRR+V     PT  C  +G+C++    RR C  CR +KCL+AGM    I+S E    RR K+  +RA+
Sbjct:    5 EDE---LRNCVVCGDQATGY-HFNALTCEGCKGFFRRTVSKSIGPT--CPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQ 100          

HSP 2 Score: 61.6178 bits (148), Expect = 1.078e-8
Identity = 30/81 (37.04%), Postives = 43/81 (53.09%), Query Frame = 0

Query:  127 LPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQE 207
            L  C +C + A  + ++ A TC  C+GFFRR+V     P   C  +G+C +     + C  CR QKCL AGM+   + S E
Sbjct:    8 LRNCVVCGDQATGY-HFNALTCEGCKGFFRRTVSKSIGP--TCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAE 85          

BLAST of retinoid x vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A)

HSP 1 Score: 78.5666 bits (192), Expect = 4.258e-14
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 0

Query:  530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE 615
            LC VCG  A  + +Y    CE C+ FFRR++Q   +P+Y CK  G C ID  +R  C  CR++KC+  GM    ++ D +R  KR+
Sbjct:   18 LCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRK 102          

HSP 2 Score: 71.2478 bits (173), Expect = 9.015e-12
Identity = 34/111 (30.63%), Postives = 57/111 (51.35%), Query Frame = 0

Query:  130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYV--------------QSQEQRKERILQRYGSKKSQPNQ 226
            C +C + A  + +Y   TC  C+GFFRR++Q   HP + C   G C ID  +   C+ CR++KC+  GM    V              +++E+R++  +Q+   +K +P Q
Sbjct:   19 CVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSLVQKPEPTQ 128          

BLAST of retinoid x vs. SwissProt
Match: gi|6094472|sp|O42295.2|THA_APTPA (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.310e-14
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 0

Query:  531 CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE 615
            C VCG  A  + +Y    CE C+ FFRR++Q   +PTY CK  G C ID  +R  C  CR++KC+  GM    ++ D +R  KR+
Sbjct:   51 CVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRK 134          

HSP 2 Score: 69.707 bits (169), Expect = 3.304e-11
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0

Query:  129 KCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQR 209
            +C +C + A  + +Y   TC  C+GFFRR++Q   HP + C   G C ID  +   C+ CR++KC+  GM    V    +R
Sbjct:   50 QCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKR 129          

BLAST of retinoid x vs. SwissProt
Match: gi|135710|sp|P04625.1|THA_CHICK (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.495e-14
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 0

Query:  531 CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE 615
            C VCG  A  + +Y    CE C+ FFRR++Q   +PTY CK  G C ID  +R  C  CR++KC+  GM    ++ D +R  KR+
Sbjct:   51 CVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRK 134          

HSP 2 Score: 69.707 bits (169), Expect = 3.289e-11
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0

Query:  129 KCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQR 209
            +C +C + A  + +Y   TC  C+GFFRR++Q   HP + C   G C ID  +   C+ CR++KC+  GM    V    +R
Sbjct:   50 QCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKR 129          

BLAST of retinoid x vs. SwissProt
Match: gi|13431914|sp|Q90382.1|THA_CAIMO (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.598e-14
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 0

Query:  531 CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE 615
            C VCG  A  + +Y    CE C+ FFRR++Q   +PTY CK  G C ID  +R  C  CR++KC+  GM    ++ D +R  KR+
Sbjct:   50 CVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRK 133          

HSP 2 Score: 69.707 bits (169), Expect = 3.623e-11
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0

Query:  129 KCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQR 209
            +C +C + A  + +Y   TC  C+GFFRR++Q   HP + C   G C ID  +   C+ CR++KC+  GM    V    +R
Sbjct:   49 QCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKR 128          

BLAST of retinoid x vs. nr
Match: gi|728054567|gb|AIY67763.1| (HR97a-like receptor 4 [Tigriopus japonicus])

HSP 1 Score: 381.333 bits (978), Expect = 4.864e-120
Identity = 206/434 (47.47%), Postives = 291/434 (67.05%), Query Frame = 0

Query:  474 NFDTSPLEALITDQFIHDILSEDVIDPC----SGEDVQAWSTLSESTLSPKTEDESVSL------RLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLE-QMSRTNPNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAK-LHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895
            +FD S LE+ ITDQFI DIL+++ ++P       E        S  +L  K +  S S       RLC VC L AGKHNYYGGQVCESCRAFFRRS+QNQ++P Y CKA   C IDSKSR+SCA CR++KCL AGMNPKWII+D+ER+ K E K++K++KAK   + +++PI R ++ +FT EE+LKV ++  YA+  K++ +A  +A+D  PL  LW +  N +   + F+  +E +E  +F+ I++GLEEMT++D EDR+TLVQ N +AFFALIMS+Y  P +F + + D+T  L+  +   +PN  L N ++TLEV+K+S     ++ETFY N    ++ LS A R ++ KIQ A+    N P D +I+C+VILNL+F S G+  L +  KVER+QN+  FML+RYL+S++  KA  KM K +ML +YT E
Sbjct:    5 DFDQS-LESFITDQFICDILTQEPLEPFDLIDEEEPSSNSPISSNDSLPIKIKRSSSSSLQIQCPRLCHVCNLPAGKHNYYGGQVCESCRAFFRRSIQNQTHPIYHCKAKKCCIIDSKSRKSCAWCRFQKCLLAGMNPKWIITDQERKFKLEAKQSKIMKAK--MKQEIVPIQRPVELKFTVEEKLKVERLSKYARKFKVSVLANHLAQDIAPLKTLWKLALNLETPSVDFIHFLEEKETTIFRTIALGLEEMTDLDSEDRETLVQRNSTAFFALIMSIYFNPGDFARHLEDVTEALDIALQANDPNPDLKNAVETLEVIKMSNFPGLSFETFYSNCPNKDENLSNAQRNIMNKIQSALREMPNKPIDAIIICIVILNLIFLSDGSSPLKDGKKVERIQNDQIFMLHRYLRSKYGDKASGKMGKLVMLMSYTQE 435          

HSP 2 Score: 129.413 bits (324), Expect = 4.488e-28
Identity = 94/351 (26.78%), Postives = 161/351 (45.87%), Query Frame = 0

Query:  130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVMAGT---FTVEEHQCLFGWYQKWHDFGASKSLDYFCDHVGVFQAILESSYEGKPMSNSAFRSMTKADEYVIVSYYFNEEEIQNLHFDDRMTLIARNFAVLYGLLWGSFSTLDDPDAQMQTY---FDFCLRNAANNPRYHSLLDLWQ-----NFVDNGKRVSPYHCGLIQRDSFPDSLKYRQYINDTEKIGSVMASD-NALDAILMIILNYICFYSTDFPDQLREGEKIKTKQNNYLALLHRY 468
            C +C+  AGKH YYG + C SCR FFRRS+QNQ HPI+ C     C IDSKS KSC +CR+QKCL AGM P ++ + ++RK      +  +  Q   +   MK ++  +       FTVEE   +    +    F  S   ++    +   + + + +   +  S      + + +  +  +     EE+ +L  +DR TL+ RN    + L+   +    D    ++      D  L+    NP   + ++  +     NF   G     ++     +D    + + R  +N  +     M +       I ++ILN I  + +D    L++G+K++  QN+ + +LHRY
Sbjct:   71 CHVCNLPAGKHNYYGGQVCESCRAFFRRSIQNQTHPIYHCKAKKCCIIDSKSRKSCAWCRFQKCLLAGMNPKWIITDQERK------FKLEAKQSKIMKAKMKQEIVPIQRPVELKFTVEEKLKVERLSKYARKFKVSVLANHLAQDIAPLKTLWKLALNLETPSVDFIHFLEEKETTIFRTIALGLEEMTDLDSEDRETLVQRNSTAFFALIMSIYFNPGDFARHLEDVTEALDIALQANDPNPDLKNAVETLEVIKMSNF--PGLSFETFYSNCPNKDENLSNAQ-RNIMNKIQSALREMPNKPIDAIIICIVILNLI--FLSDGSSPLKDGKKVERIQNDQIFMLHRY 410          

BLAST of retinoid x vs. nr
Match: gi|657600350|gb|AID52836.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 164.851 bits (416), Expect = 5.560e-40
Identity = 109/354 (30.79%), Postives = 183/354 (51.69%), Query Frame = 0

Query:  128 PKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFK-CTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVMAGTFTVEEHQCLFGWYQKWHDFGASKSLDYFCDHVGVFQAILESSYE---GKPMSNSAFRSMTKADEYVIVSYYFNEEEIQNLHFDDRMTLIARNFAVLYGLLWGSFSTLDDPDAQMQTYFDFCLRNAAN----NPRYHSLLDLWQNFVDNGKRVSPYHCGLIQRDSFPDSLKYRQYINDTEKIGSVM--ASDNALDAILMIILNYICFYSTDFPDQLREGEKIKTKQNNYLALLHRYTTT 471
            P CPIC++ AGKH YYG + C+SCRGFF+RSV+N+ H  F  C G+ NC I ++S K+CK+CR+QKCLQ+GMK  YV + ++           K      I   +K    A ++  FT  E       Y+    FG       F  +   F   L +  +   G  M + AF   T+ ++   ++Y+F+ +++ +L   DRMTLI+ NF  ++GLLW  +S   D    + T+++  L++        P    +L +++     GK+       +  R +       +++ N   ++ S +  +S ++ D I++++L++I  ++T+F   L++  KI+  Q  YL LLHRY  T
Sbjct:   89 PLCPICNDVAGKHFYYGVQACISCRGFFQRSVRNRFHLKFICCKGTQNCRITARSRKNCKWCRFQKCLQSGMKTCYVMTHDKSG------LPPKSKLILPIKAMVKT---ANLSQIFTEHEVDKALSIYKNLLSFGYRSYYQLFSQNEQEFMTFLRALNDQGGGPSMISEAF---TETNKQATINYFFSIDDMASLTPFDRMTLISHNFPSIFGLLWSVYSYTPD----LCTFYEEFLKHGYEFRDREPEIDKILMVFEANQLLGKKPKNLTIDVTFRSNSATQDLIQRHDNLVHEVNSGLRESSQSSADYIIVMLLSHIIMFATEFAVSLQDKAKIQATQEKYLVLLHRYLRT 426          

HSP 2 Score: 128.257 bits (321), Expect = 1.218e-27
Identity = 89/363 (24.52%), Postives = 168/363 (46.28%), Query Frame = 0

Query:  530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYM-CKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNV-RLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGA-KLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALML 889
            LC +C   AGKH YYG Q C SCR FF+RSV+N+ +  ++ CK +  C I ++SR++C  CR++KCL++GM   ++++ +        K     K+K +   K +  +  L   FT  E  K + I     +          +++          + ++   P    E      K         +++M  +   DR TL+  N  + F L+ S+YS   +      +  +   +     P + ++  V +  ++L   P N     TF  N   + + L + H  LV ++   +     +  D +IV L+   ++F +  A  L +KAK++  Q  +  +L+RYL++ +  +A +K+++ +M+
Sbjct:   90 LCPICNDVAGKHFYYGVQACISCRGFFQRSVRNRFHLKFICCKGTQNCRITARSRKNCKWCRFQKCLQSGMKTCYVMTHD--------KSGLPPKSKLILPIKAMVKTANLSQIFTEHEVDKALSIYKNLLSFGYRSYYQLFSQNEQEFMTFLRALNDQGGGPSMISEAFTETNKQATINYFFSIDDMASLTPFDRMTLISHNFPSIFGLLWSVYSYTPDLCTFYEEFLKHGYEFRDREPEIDKILMVFEANQLLGKKPKNLTIDVTFRSN--SATQDLIQRHDNLVHEVNSGLRESSQSSADYIIVMLLSHIIMFATEFAVSLQDKAKIQATQEKYLVLLHRYLRTHYQGRARAKLSETMMI 442          

BLAST of retinoid x vs. nr
Match: gi|657600348|gb|AID52835.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 151.754 bits (382), Expect = 2.425e-35
Identity = 114/389 (29.31%), Postives = 186/389 (47.81%), Query Frame = 0

Query:  518 SPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENRE---KALFQGISMGLEEMTEIDVEDRQTLVQENGSAF--------FALIMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895
            +P+T + S   R C VC   +GKH+YYG QVC SCRAFFRRS  N ++  + CK S  C I+SKS +SC  CRY+KCL AGM   W+++DEE RV+R   R ++ K   ++   V      +  ++TT+EE ++ Q RN         +A   + +        D +    N P   +     R      + + IS  L  M +I   DR  L+  N   +        F     +  I   F K +    RTL+  S   PN  + ++  T +  KLS  ++  +     N+  +++++      L+T IQ           D++++ L+ + L+F S   KL ++  V ++QN + +MLYRY+  +   KA  K+ + + + +   E
Sbjct:   95 TPRTPNLSKPHRECPVCDNPSGKHSYYGAQVCFSCRAFFRRSTINSTFTEFQCKDSKTCGINSKSWKSCKFCRYQKCLSAGMKSTWVLNDEE-RVQRNANRKRLRK---IREAGVAFSETFIGNQWTTDEEHQIRQARNDFLLKGFGVIAQFCSSNPNIFDRYVDCL--NGNTPFDPMLVGYTRRFIYSEVMKSIS-DLLIMKDIHPVDRFLLLSHNYPLWVSFEEAVQFRNHQEMEKIQQTFSKCI----RTLKSSSDLWPNANIDHLQRTFD--KLSVHDNANFLDKLNNLI-TDQSMRRRRTQLITSIQSWPKISSRGLADDILLTLMTMILIFSSDSLKLQSEGVVSKIQNQYCYMLYRYVNFKSPGKAHVKLGEGMEIVSKVRE 469          

HSP 2 Score: 129.413 bits (324), Expect = 7.375e-28
Identity = 125/435 (28.74%), Postives = 190/435 (43.68%), Query Frame = 0

Query:   97 MDLLS-QEFFNSKPNPHDTIIV------------SAEFRPTQTLP-------KCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVMAGTFTV-EEHQCLFGWYQKWHDF---GASKSLDYFCDHVGVFQAILESSYEGKPMSNSAFRSMTKADEYVIVSYYFNEEEI-QNLHFDDRMTLIARNFAVLYGLLWGSFSTL-----DDPDAQMQTYFDFCLRNAANNPRYHSLLDLWQNF-VDNGKRVSPYHCGLIQRDSFPDSLKYRQYIND-----------TEKIGSV-----MASDNALDAILMIILNYICFYSTDFPDQLREGEKIKTKQNNYLALLHRYTTTMINFDTSPLEALI 484
            +D +S QE  N  P   DT  +            S++F  T   P       +CP+C N +GKH+YYGA+ C SCR FFRRS  N     F+C  S  C I+SKSWKSCKFCRYQKCL AGMK  +V + E+R +R   R   +K +   +  S        +   +T  EEHQ      Q  +DF   G      +   +  +F   ++      P  +      T+   Y  V    ++  I +++H  DR  L++ N+      LW SF             ++Q  F  C+R   ++       DLW N  +D+ +R          + S  D+  +   +N+           T+ I S+     ++S    D IL+ ++  I  +S+D      EG  +   QN Y  +L+RY    +NF  SP +A +
Sbjct:   55 LDTISLQELMNVAPVECDTQTITNDPNIVSQTEDSSDFSDTPRTPNLSKPHRECPVCDNPSGKHSYYGAQVCFSCRAFFRRSTINSTFTEFQCKDSKTCGINSKSWKSCKFCRYQKCLSAGMKSTWVLNDEERVQRNANRKRLRKIREAGVAFS-----ETFIGNQWTTDEEHQI----RQARNDFLLKGFGVIAQFCSSNPNIFDRYVDCLNGNTPF-DPMLVGYTRRFIYSEVMKSISDLLIMKDIHPVDRFLLLSHNYP-----LWVSFEEAVQFRNHQEMEKIQQTFSKCIRTLKSSS------DLWPNANIDHLQRT-------FDKLSVHDNANFLDKLNNLITDQSMRRRRTQLITSIQSWPKISSRGLADDILLTLMTMILIFSSDSLKLQSEG-VVSKIQNQYCYMLYRY----VNF-KSPGKAHV 455          

BLAST of retinoid x vs. nr
Match: gi|657600346|gb|AID52834.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 144.821 bits (364), Expect = 5.854e-33
Identity = 113/392 (28.83%), Postives = 193/392 (49.23%), Query Frame = 0

Query:  531 CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKR-EHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELKVMQIRN--YAKTCKLNHMALTMAK--DGGPLTVLWDVIFNKQNVPLKFLETVENR---EKALF----QGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNVRLT--------------NVLDTLEVL-KLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895
            C VCG  +GKH YYG QVC SCRAFFRRS  N +   + CKA   C IDSKS +SC  CR++KCL AGM P W+++DEER  +  + KR +  +  +V  + VL        ++T +E+L++  IR   + KT      +  +AK     P+      I N      KF+    NR   +  L     + +S G+ +M      +   L   N    F L+   Y++ ++F++ +  L +  +++ +   NVR +              NV    E + K+S  ++        N+ Q  +T  +  R+L+T IQ       N   D+++  L+++ L+      +L++++ V + QN + ++LYRY+ S++  +A SK+ + + + +   E
Sbjct:  115 CPVCGNPSGKHLYYGAQVCSSCRAFFRRSTINSAAEEFRCKADKKCGIDSKSWKSCKFCRFQKCLSAGMRPNWVMNDEERTQRNAKRKRTRTKRVDNVVSEAVLS------HQWTVDEDLQIRGIREEIFEKT------SCIIAKFYADNPM------ILN------KFIACANNRTPFDSVLLAYTKRFVSNGMMKM----FNELLVLQHINPMDRFLLLSRNYAMWSSFEEAI--LFKNRQEVIKNQQNVRNSLNKIKTSADGDQAFNVDMIQEAMDKISLEDNVESSDVIDNLIQDQQT-RDRRRSLITSIQAWPKFNANGVSDDILTTLMMMILICCPDALQLNSESAVSQFQNQYCYILYRYINSKYPGQAHSKLGEGMEIVSKVRE 475          

HSP 2 Score: 137.887 bits (346), Expect = 1.125e-30
Identity = 108/360 (30.00%), Postives = 173/360 (48.06%), Query Frame = 0

Query:  130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVMAGTFTVEEHQCLFGWYQKWHDFGASKSLDYFCDHVGVFQAILESSYEGKPMSNSAFRSMTKADEYVIVSYYFNEEEI-QNLHFDDRMTLIARNFAVLYGLLWGSF-STLDDPDAQMQTYFDFCLRNAANNPRYHS------LLDLWQNFVD-----NGKRVSPYHCGLIQRDSFPDSLKYRQYINDTE---KIGSVMASDNALDAILMIILNYICFYSTDFPD--QLREGEKIKTKQNNYLALLHRYTTT 471
            CP+C N +GKH YYGA+ C SCR FFRRS  N     F+C     C IDSKSWKSCKFCR+QKCL AGM+P +V + E+R +R  +R   K+++  +++  +     AV++  +TV+E   + G  ++  +  +     ++ D+  +    +  +    P  +S   + TK      +   FNE  + Q+++  DR  L++RN+A     +W SF   +   + Q        +RN+ N  +  +       +D+ Q  +D     +    S     LIQ     D  + R  I   +   K  +   SD+ L  ++M+IL  IC      PD  QL     +   QN Y  +L+RY  +
Sbjct:  115 CPVCGNPSGKHLYYGAQVCSSCRAFFRRSTINSAAEEFRCKADKKCGIDSKSWKSCKFCRFQKCLSAGMRPNWVMNDEERTQRNAKR---KRTRTKRVDNVVS---EAVLSHQWTVDEDLQIRGIREEIFEKTSCIIAKFYADNPMILNKFIACANNRTPF-DSVLLAYTKRFVSNGMMKMFNELLVLQHINPMDRFLLLSRNYA-----MWSSFEEAILFKNRQEVIKNQQNVRNSLNKIKTSADGDQAFNVDMIQEAMDKISLEDNVESSDVIDNLIQDQQTRD--RRRSLITSIQAWPKFNANGVSDDILTTLMMMIL--IC-----CPDALQLNSESAVSQFQNQYCYILYRYINS 453          

BLAST of retinoid x vs. nr
Match: gi|657600344|gb|AID52833.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 143.665 bits (361), Expect = 3.371e-32
Identity = 108/392 (27.55%), Postives = 183/392 (46.68%), Query Frame = 0

Query:  512 LSESTLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEE--RRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELKVMQIRN-YAKTCKLNHMALTMAKDGGP--LTVLWDVIFNKQNVPLKFLETVENREKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGNHP--TYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSK-MAKALMLTTYTTE 895
            L +ST+ P   D +     C +C   AGKHNYYGG+ C SCRAFFRR+VQ++ Y  + C     C+I+ K+RRSC  CR++KCL +GM   W++ D E  RR  + HK AK   ++     KV+        E       ++  IR  + K   L   +L       P  +  L +  +      + F++  +         +    EE   +   DR+ L++ NG      +++ +      ++  + L   +EQ +++     L ++++ L  L ++    P   Y  FY +   S+K     +  L+ K++        +P DE+ + L  + + F      L  ++ VE +Q  +  ML+RYL  R+  KA +K +A  LM++TY  E
Sbjct:  177 LPKSTMPPSNWDNTK----CYICQEKAGKHNYYGGKACPSCRAFFRRAVQSKYYEIFFCNKGEKCEINLKTRRSCQFCRFKKCLASGMRVAWVLPDGERNRRFNKLHKSAKKNNSQIEGDLKVVAKKPKGPLEIQGVLPGEIDMIRGVHMKVDSLGAKSLREFILAQPEFMKKLANFSYFGGQPDMDFIQKFQLMCDRFAHFVLTTSEEFKMLSFGDRRQLIEVNGP-----LLNRFKCSVTIQETNSCLVNGIEQATKSGEFPYLNDIVEKLAQLNMT-DRKPILAYNQFYASPWASSKEAEGRYFNLMIKMKAWPRDNIASPVDEIQMTLAKMIIAFSPDFLNLEQRSVVEAIQMKYVSMLHRYLVFRYGAKAATKRLAAGLMMSTYARE 558          

HSP 2 Score: 120.168 bits (300), Expect = 1.539e-24
Identity = 83/250 (33.20%), Postives = 121/250 (48.40%), Query Frame = 0

Query:  106 NSKPNPHDTIIVSAEFRPTQTLP-------KCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMK---------LQMHAVMAGTFTVEEHQCLFGWYQKWHDFGASKSLDYFCDHVGVFQAILE--SSYEGKPMSN--SAFRSMTKADEYVIVSYYFNEEEIQNLHFDDRMTLIARNFAVL 335
            N +P      + S E  P  T+P       KC IC   AGKH YYG + C SCR FFRR+VQ++++ IF C     C I+ K+ +SC+FCR++KCL +GM+ A+V    +R  R  + + S K   +QI G +K         L++  V+ G     E   + G + K    GA KSL  F      F   L   S + G+P  +    F+ M     + +++     EE + L F DR  LI  N  +L
Sbjct:  161 NPEPQKSPGALDSEENLPKSTMPPSNWDNTKCYICQEKAGKHNYYGGKACPSCRAFFRRAVQSKYYEIFFCNKGEKCEINLKTRRSCQFCRFKKCLASGMRVAWVLPDGERNRRFNKLHKSAKKNNSQIEGDLKVVAKKPKGPLEIQGVLPG-----EIDMIRGVHMKVDSLGA-KSLREFILAQPEFMKKLANFSYFGGQPDMDFIQKFQLMCDRFAHFVLT---TSEEFKMLSFGDRRQLIEVNGPLL 401          

BLAST of retinoid x vs. nr
Match: gi|728054565|gb|AIY67762.1| (HR97a-like receptor 6 [Tigriopus japonicus])

HSP 1 Score: 138.658 bits (348), Expect = 7.807e-31
Identity = 116/403 (28.78%), Postives = 188/403 (46.65%), Query Frame = 0

Query:  510 STLSESTLSPKTEDESVSLRL-CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLP---ISRGLDFEFTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVI---FNKQNVPL----KFLETVENREKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSI----PNNFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLS------EAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTT 891
            S +S   +S   E E++  +L C VCG  AGKH YYGGQVC SCRAFFRR+V  +SY  + C     C I+SKS +SC  CR++KCL++GM   W+ ++++     +  +AK       K   ++P   I R +  ++T EEE  V    N+A     + +    A+       +  V    F+ +N P     +F   + N E + F+       +M ++   D++ LV EN    F L   +  +       + +L  D  +      R + +    NV+  L    LS  +HP  +    N + S   LS          +L+T+IQ     F + P D ++  L+   ++F  +   L +  KV  +Q  F  ML RYLK++  ++A  K+ +A+   T
Sbjct:   84 SDVSFKQVSSSVEPEAIKTQLICLVCGNAAGKHCYYGGQVCVSCRAFFRRAVLGKSYSEFKCSKEEQCVINSKSWKSCRFCRFQKCLQSGMRIAWVTTEDKPSGPSKGSKAK------PKGKLIVPTSAIQRSIQLKWTLEEECYVRGFYNHAWENWCHVITDFYARHPVYFASIISVFLLDFSVENNPFMTKSEFYGQMVNMELS-FKRFWFTHPDMNDLCQADQEQLVNENNDLIFTLCRCVQYLNAQDVAKYSRLYRDRLK-----ERASQDESCQNVVAMLSNFTLS--DHPE-DNITPNTTTSLCLLSADDESKSLESSLMTEIQEWNRLFPHGPCDPIMQTLMGYLIIFDPNMKNLQDYKKVCDIQTKFLHMLQRYLKAKVPKQATKKIGQAVEFIT 471          

HSP 2 Score: 127.487 bits (319), Expect = 3.200e-27
Identity = 107/406 (26.35%), Postives = 182/406 (44.83%), Query Frame = 0

Query:   86 DLSEFMDEQTIMDLLSQEFFNSKPNPHDT----IIVSAEFRPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVMAGT---FTVEEHQCLFGWY----QKW----HDFGASKSLDYFCDHVGVFQAILESSYEGKP-MSNSAFRSMTKADEYVIVSYYFNEEEIQNLHFDDRMTLIARNFAVLYGLL-WGSFSTLDDPDAQMQTYFDFCLRNAANNPRYHSLLDLWQNFV------DNGKRVSPYHCGLIQRDSFPDSLKYRQYINDTEKIGSVMASDNALDAILMIILNYICFYSTDFPDQLREGEKIKTKQNNYLALLHRY 468
            DL  F+ E  ++    Q   +S+    D     +  S E    +T   C +C N+AGKH YYG + C+SCR FFRR+V  + +  FKC+    C I+SKSWKSC+FCR+QKCLQ+GM+ A+V ++++         G  K    +  G + +   A+       +T+EE   + G+Y    + W     DF A   + YF   + VF  +L+ S E  P M+ S F       E     ++F   ++ +L   D+  L+  N  +++ L     +    D     + Y D     A+ +    +++ +  NF       DN    +     L+  D    SL+        E   + +      D I+  ++ Y+  +  +  + L++ +K+   Q  +L +L RY
Sbjct:   58 DLESFLHESNVVSKSPQISDDSEMCKSDVSFKQVSSSVEPEAIKTQLICLVCGNAAGKHCYYGGQVCVSCRAFFRRAVLGKSYSEFKCSKEEQCVINSKSWKSCRFCRFQKCLQSGMRIAWVTTEDKPS-------GPSKGSKAKPKGKLIVPTSAIQRSIQLKWTLEEECYVRGFYNHAWENWCHVITDFYARHPV-YFASIISVF--LLDFSVENNPFMTKSEFYGQMVNMELSFKRFWFTHPDMNDLCQADQEQLVNENNDLIFTLCRCVQYLNAQDVAKYSRLYRDRLKERASQDESCQNVVAMLSNFTLSDHPEDNITPNTTTSLCLLSADDESKSLESSLMTEIQE--WNRLFPHGPCDPIMQTLMGYLIIFDPNMKN-LQDYKKVCDIQTKFLHMLQRY 450          

BLAST of retinoid x vs. nr
Match: gi|657600342|gb|AID52832.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 135.191 bits (339), Expect = 3.342e-30
Identity = 115/386 (29.79%), Postives = 174/386 (45.08%), Query Frame = 0

Query:  529 RLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMC-KASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEE-------LKVMQ---IRNYAKTCK-----LNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFAL--IMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGN-HPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895
            R+CQVCG  AG+HNYYGGQ C  CRAFFRR VQ       +C   S  C ++  +RR C  CR+ +CL  GM P W++SD ER  +R  K A    A  +   K  P+S  +     T  +       +K+M    +RN    C      +  MA+ M+  GG      D  F ++     F    +N    +FQ +S  L E   + V+D+Q LV+ NG    AL   +SL+     F          LE+  ++     L +    L+   +S       Y   + +   ++    E H  LV K+Q        +  D++ + L+ L ++F S    L     VE+ Q  F  +L +Y+K R+  +AG ++   LML +Y  E
Sbjct:   45 RICQVCGDEAGQHNYYGGQSCSGCRAFFRRIVQRDLQANLICVDNSNECVVNKSTRRRCQFCRFHRCLAIGMRPGWVLSDHERE-RRYRKTANGSHAVSIATQKS-PVSNRISLLVLTTNDNTHITAHMKMMDAHFVRNMDVVCAQKQDFIRKMAV-MSYFGGQS----DFEFYEE-----FYSLCDN---FVFQVMSSVL-EFRSLPVQDQQELVRVNGQYMVALKYAVSLHETDWCFVYF-------LERALKSGKFPYLNDFAQELDAFGMSEHKPRLMYSQVFSSPWAASAADEERHLFLVNKMQSWPRKDAQDRVDDVQMNLLKLIILFSSEFVNLQRPDIVEQTQMKFIGLLQKYMKFRYGPEAGVRLGNGLMLLSYAKE 407          

HSP 2 Score: 86.2705 bits (212), Expect = 5.032e-14
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 0

Query:  130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGN-CTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212
            C +C + AG+H YYG ++C  CR FFRR VQ        C  + N C ++  + + C+FCR+ +CL  GM+P +V S  +R+ R
Sbjct:   47 CQVCGDEAGQHNYYGGQSCSGCRAFFRRIVQRDLQANLICVDNSNECVVNKSTRRRCQFCRFHRCLAIGMRPGWVLSDHERERR 130          

BLAST of retinoid x vs. nr
Match: gi|1325306415|ref|XP_023334818.1| (oxysterols receptor LXR-alpha-like [Eurytemora affinis])

HSP 1 Score: 120.168 bits (300), Expect = 9.642e-27
Identity = 60/161 (37.27%), Postives = 96/161 (59.63%), Query Frame = 0

Query:  520 KTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVL---PISRGLDFEFTTEEEL----KVMQIRNYAKTCKLNHMALTMAKD 673
            K E++    R C+VCG  AG+H+YYGGQVC SCRAFFRRSV + +   Y C  +G C+++SK+R+ C  CRY  C +AGM   W+++D E+++K    +    K   +  D+V     +S      F +E EL    ++++I ++ +T K+N M  T+ ++
Sbjct:   33 KDENDDDIFRACKVCGEEAGRHSYYGGQVCASCRAFFRRSVNSGANKAYFCVKNGNCEVNSKTRKQCQYCRYRLCEDAGMKTSWVLTDTEKKLKSSEGKEGKQKRNSIDYDEVSNPPSLSGESSSIFISETELVLINELVEISDFWETSKVNDMDTTLIRE 193          

HSP 2 Score: 92.8189 bits (229), Expect = 2.285e-17
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0

Query:  130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRK 210
            C +C   AG+H+YYG + C SCR FFRRSV +  +  + C  +GNC ++SK+ K C++CRY+ C  AGMK ++V +  ++K
Sbjct:   44 CKVCGEEAGRHSYYGGQVCASCRAFFRRSVNSGANKAYFCVKNGNCEVNSKTRKQCQYCRYRLCEDAGMKTSWVLTDTEKK 124          

BLAST of retinoid x vs. nr
Match: gi|1325265241|ref|XP_023336689.1| (oxysterols receptor LXR-alpha-like [Eurytemora affinis])

HSP 1 Score: 119.398 bits (298), Expect = 5.099e-24
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0

Query:  530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMC-KASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAK 620
            +CQVCG  AGKH+YYGGQVC SCRAFFRRSVQ++ Y  + C   S +C I+  +R++C  CRY KCL  GM P WI+S+EE R++R H R K
Sbjct:  183 VCQVCGEKAGKHSYYGGQVCPSCRAFFRRSVQSRCYTGFRCINRSESCPINLLTRKNCQYCRYHKCLSCGMRPSWILSEEE-RIRRFHGRTK 273          

HSP 2 Score: 100.523 bits (249), Expect = 4.785e-18
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 0

Query:  128 PKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTG-SGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSK 220
            P C +C   AGKH+YYG + C SCR FFRRSVQ++ +  F+C   S +C I+  + K+C++CRY KCL  GM+P+++ S+E+R  R   R   K
Sbjct:  182 PVCQVCGEKAGKHSYYGGQVCPSCRAFFRRSVQSRCYTGFRCINRSESCPINLLTRKNCQYCRYHKCLSCGMRPSWILSEEERIRRFHGRTKGK 275          

BLAST of retinoid x vs. nr
Match: gi|657600356|gb|AID52839.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 111.694 bits (278), Expect = 1.492e-21
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 0

Query:  499 DPCSGEDVQAWSTLSESTLSPKTEDESVS-LRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKR 629
            DP  G   Q    +  S    K E+  +S    C+VCG  A +H +YG   C SCRAFFRRS+QN+++  Y C+  G C+I  KSR++C  CRYE+CL AGM P W++S+EER  +    R K  +    ++
Sbjct:   55 DPGEGPSEQNDVRMHSSGKKCKKENPLISDTEKCRVCGEPAARHVHYGSVTCFSCRAFFRRSIQNKAWNNYSCRRQGQCEIMLKSRKNCQKCRYEECLSAGMKPTWVLSEEERSRRFRKTREKKARQNSTRK 186          

HSP 2 Score: 101.293 bits (251), Expect = 3.162e-18
Identity = 53/137 (38.69%), Postives = 76/137 (55.47%), Query Frame = 0

Query:  129 KCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQ-----------RYGSKKSQP----------NQINGSMKL--QMHAVMAGT 242
            KC +C   A +H +YG+ TC SCR FFRRS+QN+    + C   G C I  KS K+C+ CRY++CL AGMKP +V S+E+R  R  +           R  ++ S+P          +QI GS KL  + H+ + G+
Sbjct:   87 KCRVCGEPAARHVHYGSVTCFSCRAFFRRSIQNKAWNNYSCRRQGQCEIMLKSRKNCQKCRYEECLSAGMKPTWVLSEEERSRRFRKTREKKARQNSTRKSNEGSEPETNNGQGNEDDQIPGSSKLDTRTHSTLHGS 223