retinoid x, maker-scaffold42_size484952-snap-gene-3.25 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000001919 (supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5") HSP 1 Score: 70.8626 bits (172), Expect = 6.434e-13 Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 0
Query: 130 CPICSNSA-GKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQR 209
C IC + A GKH YG +C C+GFF+R+V+ + + C + +C ID + C++CRY KCL GMK VQ + R
Sbjct: 91 CSICGDRASGKH--YGVYSCEGCKGFFKRTVRKEL--TYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHR 167 HSP 2 Score: 68.5514 bits (166), Expect = 3.183e-12 Identity = 42/113 (37.17%), Postives = 56/113 (49.56%), Query Frame = 0
Query: 500 PCSGEDVQAWSTLSESTLS-PKTEDESVSLRLCQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER 610
P G A ST S + P S S C +CG A GKH YG CE C+ FF+R+V+ + TY C+ + C ID + R C CRY KCL+ GM + + + R
Sbjct: 59 PHPGVHGHARSTQSPPNNTYPPNHPLSGSKHFCSICGDRASGKH--YGVYSCEGCKGFFKRTVRKEL--TYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHR 167
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1") HSP 1 Score: 71.2478 bits (173), Expect = 7.861e-13 Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212
C +C ++A +YG RTC C+GFF+R+VQ + C NC +D + C+FCR+QKCL GM V++ + R
Sbjct: 409 CAVCGDNAACQ-HYGVRTCEGCKGFFKRTVQKNAK--YVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRR 488 HSP 2 Score: 68.5514 bits (166), Expect = 5.585e-12 Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 0
Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISD 607
LC VCG +A +YG + CE C+ FF+R+VQ + Y+C A C +D + R C CR++KCL GM + + +D
Sbjct: 408 LCAVCGDNAACQ-HYGVRTCEGCKGFFKRTVQKNA--KYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTD 482
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000009941 (supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-1 gene:EMLSAG00000009941 transcript:EMLSAT00000009941 description:"maker-LSalAtl2s649-snap-gene-4.11") HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-12 Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = 0
Query: 469 TTTMINFDTSPLEALI--TDQFIHDILSEDVIDPCSGEDVQAWSTLSESTLSPKTEDESVSLRLCQVCG-LHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGM 599
+ T +N ++ ++L+ T IH +S D I P + A ++ + S +E ++ C VCG +GKH YG CE C++FF+RSV+ TY C+ S C +D R C CR +KC + GM
Sbjct: 24 SITSLNPPSASPDSLVGSTTHLIHHHISSDSISPAISSGIVA--SIEHAKPSELSESSDIN---CVVCGDKSSGKH--YGQFTCEGCKSFFKRSVRRNL--TYQCRGSKNCPVDQHHRNQCQHCRLKKCFKMGM 148 HSP 2 Score: 62.7734 bits (151), Expect = 1.767e-10 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 0
Query: 130 CPICSN-SAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQ 204
C +C + S+GKH YG TC C+ FF+RSV+ ++C GS NC +D C+ CR +KC + GM+ VQ
Sbjct: 83 CVVCGDKSSGKH--YGQFTCEGCKSFFKRSVRRNL--TYQCRGSKNCPVDQHHRNQCQHCRLKKCFKMGMRREAVQ 154
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000009969 (supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-1 gene:EMLSAG00000009969 transcript:EMLSAT00000009969 description:"maker-LSalAtl2s651-augustus-gene-2.5") HSP 1 Score: 64.6994 bits (156), Expect = 5.265e-11 Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 0
Query: 518 SPKTEDESVSLRLCQVCG-LHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGM 599
SP + S + LC VCG +GKH YG CE C++FF+R V+ T+ C++ +C +D R C CR++KCL GM
Sbjct: 62 SPSSGTNSSTEILCVVCGDKSSGKH--YGQFTCEGCKSFFKRCVRRSL--TFQCRSKKSCPVDQHHRNQCQHCRFKKCLNMGM 140 HSP 2 Score: 60.077 bits (144), Expect = 1.821e-9 Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 0
Query: 130 CPICSN-SAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQ 204
C +C + S+GKH YG TC C+ FF+R V+ F+C +C +D C+ CR++KCL GMK VQ
Sbjct: 75 CVVCGDKSSGKH--YGQFTCEGCKSFFKRCVRRSL--TFQCRSKKSCPVDQHHRNQCQHCRFKKCLNMGMKKEAVQ 146
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000006454 (supercontig:LSalAtl2s:LSalAtl2s3535:4892:6220:-1 gene:EMLSAG00000006454 transcript:EMLSAT00000006454 description:"maker-LSalAtl2s3535-snap-gene-0.8") HSP 1 Score: 63.5438 bits (153), Expect = 5.707e-11 Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 0
Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQ---SYPTYMCKASGA--------CDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREH 616
LC+VC + + ++YG C CRAFFRR V+ Q + PT G CDI S R +C CR+ CL GM+P +++D E+ +K+E+
Sbjct: 27 LCRVCRVVEYQFHHYGAYACNRCRAFFRRMVRRQRKGNPPTPCITTKGVPPITDAPICDI-SLFRGACQACRFLACLNKGMDPSLVLTD-EKSLKKEN 122
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000004451 (supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1 gene:EMLSAG00000004451 transcript:EMLSAT00000004451 description:"snap_masked-LSalAtl2s231-processed-gene-9.18") HSP 1 Score: 64.3142 bits (155), Expect = 9.276e-11 Identity = 33/81 (40.74%), Postives = 45/81 (55.56%), Query Frame = 0
Query: 531 CQVCGLH-AGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER 610
C VCG +G H YG CESC+ FF+R+VQN+ Y+C C + +R+ C CR++KCL GM + I D R
Sbjct: 155 CPVCGDKISGFH--YGIFSCESCKGFFKRTVQNKK--NYVCLRGSQCPVTISTRKKCPACRFDKCLNIGMKLEAIREDRTR 231 HSP 2 Score: 63.1586 bits (152), Expect = 2.128e-10 Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 0
Query: 130 CPICSNS-AGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212
CP+C + +G H YG +C SC+GFF+R+VQN+ + + C C + + K C CR+ KCL GMK ++ R R
Sbjct: 155 CPVCGDKISGFH--YGIFSCESCKGFFKRTVQNKKN--YVCLRGSQCPVTISTRKKCPACRFDKCLNIGMKLEAIREDRTRGGR 234
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000009940 (supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-1 gene:EMLSAG00000009940 transcript:EMLSAT00000009940 description:"maker-LSalAtl2s649-augustus-gene-4.7") HSP 1 Score: 63.929 bits (154), Expect = 1.453e-10 Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 0
Query: 531 CQVCG-LHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGM 599
C VCG +GKH YG CE C++FF+RSV+ TY C+ S +C ID R C CR +KC++ GM
Sbjct: 434 CVVCGDKSSGKH--YGQFTCEGCKSFFKRSVRRAL--TYQCRGSRSCPIDQHHRNQCQHCRLKKCIKMGM 499 HSP 2 Score: 62.3882 bits (150), Expect = 3.981e-10 Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0
Query: 130 CPICSN-SAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQ 204
C +C + S+GKH YG TC C+ FF+RSV+ ++C GS +C ID C+ CR +KC++ GM+ VQ
Sbjct: 434 CVVCGDKSSGKH--YGQFTCEGCKSFFKRSVRRAL--TYQCRGSRSCPIDQHHRNQCQHCRLKKCIKMGMRKEAVQ 505
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000012486 (supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1 gene:EMLSAG00000012486 transcript:EMLSAT00000012486 description:"maker-LSalAtl2s91-snap-gene-4.8") HSP 1 Score: 63.929 bits (154), Expect = 1.592e-10 Identity = 28/71 (39.44%), Postives = 44/71 (61.97%), Query Frame = 0
Query: 130 CPICSNSA-GKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMK 199
C +C + A G+H YGA +C C+GFF+RS++ Q ++C G+ +C + C++CR QKCL GM+
Sbjct: 220 CVVCGDRASGRH--YGAISCEGCKGFFKRSIRKQLG--YQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 286 HSP 2 Score: 62.003 bits (149), Expect = 5.135e-10 Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 0
Query: 524 ESVSLRLCQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGM 599
++ + C VCG A G+H YG CE C+ FF+RS++ Q Y C+ + C++ R C CR +KCL GM
Sbjct: 213 QAFGIEACVVCGDRASGRH--YGAISCEGCKGFFKRSIRKQL--GYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGM 285
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7") HSP 1 Score: 62.003 bits (149), Expect = 3.500e-10 Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 0
Query: 531 CQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKA--SGACDIDSKSRRSCACCRYEKCLEAGMN 600
C+VC H+ GKH YG C+ C FF+RS++ Y+CKA G+C +D R C CR ++C++ GMN
Sbjct: 34 CKVCTDHSSGKH--YGIFACDGCAGFFKRSIRRNRL--YVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMN 102 HSP 2 Score: 61.2326 bits (147), Expect = 6.683e-10 Identity = 29/88 (32.95%), Postives = 46/88 (52.27%), Query Frame = 0
Query: 130 CPICSN-SAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQR 216
C +C++ S+GKH YG C C GFF+RS++ + K G+C +D C+ CR ++C+ GM VQ + + L+R
Sbjct: 34 CKVCTDHSSGKH--YGIFACDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHERGPRNSTLRR 119
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000007741 (supercontig:LSalAtl2s:LSalAtl2s450:172104:174744:-1 gene:EMLSAG00000007741 transcript:EMLSAT00000007741 description:"maker-LSalAtl2s450-snap-gene-2.9") HSP 1 Score: 60.8474 bits (146), Expect = 1.018e-9 Identity = 37/99 (37.37%), Postives = 48/99 (48.48%), Query Frame = 0
Query: 531 CQVCG-LHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGA----CDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKA 624
C+VCG +GKH YG C+ C FF+RS+ Q Y CKA G C ID R C CR +KC + MN + + R R+ K K L +
Sbjct: 108 CKVCGDRSSGKH--YGIYSCDGCSGFFKRSIHRQR--IYTCKAQGEFKGRCPIDKTHRNQCRACRLKKCFDCSMNKDAV---QHERGPRKSKLQKDLNS 199 HSP 2 Score: 58.5362 bits (140), Expect = 5.801e-9 Identity = 32/92 (34.78%), Postives = 45/92 (48.91%), Query Frame = 0
Query: 130 CPICSN-SAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGN----CTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQR 216
C +C + S+GKH YG +C C GFF+RS+ Q I+ C G C ID C+ CR +KC M VQ + ++ LQ+
Sbjct: 108 CKVCGDRSSGKH--YGIYSCDGCSGFFKRSIHRQR--IYTCKAQGEFKGRCPIDKTHRNQCRACRLKKCFDCSMNKDAVQHERGPRKSKLQK 195
BLAST of retinoid x vs. SwissProt
Match: gi|6016234|sp|P79926.1|HNF4B_XENLA (RecName: Full=Hepatocyte nuclear factor 4-beta; Short=HNF-4-beta; AltName: Full=Nuclear receptor subfamily 2 group A member 3) HSP 1 Score: 82.8037 bits (203), Expect = 2.374e-15 Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = 0
Query: 85 PDLSEFMDEQTIMDLLSQEFFNSKPNPHDTIIVSAEFRPTQTLPK-----CPICSNSA-GKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQM 235
PD +E +D M EF + + P +T I++ E L C IC + A GKH YGA +C C+GFFRRSV+ H ++ C S C +D C++CR +KC +AGMK VQ++ ++RI R S + NGS+ + +
Sbjct: 4 PDYTETLDSSYTM----LEFDSIRVLPSNTEIITVETASPGLLNNGINSFCAICGDRATGKH--YGASSCDGCKGFFRRSVRKNH--VYACRFSRQCIVDKDKRNQCRYCRLRKCFRAGMKKEAVQNE---RDRISMRRSSYED-----NGSLSINV 144 HSP 2 Score: 66.2402 bits (160), Expect = 4.933e-10 Identity = 35/100 (35.00%), Postives = 51/100 (51.00%), Query Frame = 0
Query: 512 LSESTLSPKTEDESVSLRLCQVCGLHA-GKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER 610
++ T SP + ++ C +CG A GKH YG C+ C+ FFRRSV+ Y C+ S C +D R C CR KC AGM + + ++ +R
Sbjct: 32 ITVETASPGLLNNGIN-SFCAICGDRATGKH--YGASSCDGCKGFFRRSVRKNH--VYACRFSRQCIVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDR 126
BLAST of retinoid x vs. SwissProt
Match: gi|205371750|sp|P49880.2|ECR_AEDAE (RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone receptor; Short=20E receptor; AltName: Full=EcRH; Short=AaEcR; AltName: Full=Ecdysteroid receptor; AltName: Full=Nuclear receptor subfamily 1 group H member 1) HSP 1 Score: 83.9593 bits (206), Expect = 2.885e-15 Identity = 57/181 (31.49%), Postives = 86/181 (47.51%), Query Frame = 0
Query: 468 YTTTMINFDTSPLEALITDQF-IHDILSEDVIDPCSGEDVQAWSTLSESTLSPKTEDESVSLRLCQVCG-LHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAK-----------DVKRDKVLPI 635
YTTTM N +SP+ D + + + + + P S + ++ S++ K LC VCG +G H Y CE C+ FFRRSV + Y CK AC++D RR C CR +KCL GM P+ ++ + + +KR+ K+A+ K K R ++LPI
Sbjct: 229 YTTTMSNGYSSPMSTGSYDPYSPNGKMGREDLSPSS--SLNGYTDGSDAKKQKKGPTPRQQEELCLVCGDRESGYH--YNALTCEGCKGFFRRSVTKNA--VYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNATVSTTNSTYRSEILPI 403 HSP 2 Score: 60.8474 bits (146), Expect = 4.079e-8 Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 0
Query: 123 PTQTLPKCPICSN-SAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQ----RKERILQRYGSK 220
P Q C +C + +G H Y A TC C+GFFRRSV + ++ C C +D + C+ CR +KCL GM+P V + Q RKE+ Q+ K
Sbjct: 284 PRQQEELCLVCGDRESGYH--YNALTCEGCKGFFRRSVTK--NAVYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDK 382
BLAST of retinoid x vs. SwissProt
Match: gi|160221327|sp|P79387.3|STF1_PIG (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP) HSP 1 Score: 81.6481 bits (200), Expect = 6.164e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237
CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A
Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.4034 bits (176), Expect = 5.273e-12 Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAK 625
LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK +
Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQ 108
BLAST of retinoid x vs. SwissProt
Match: gi|416584|sp|Q04752.1|STF1_BOVIN (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP) HSP 1 Score: 81.6481 bits (200), Expect = 7.229e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237
CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A
Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.4034 bits (176), Expect = 6.509e-12 Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 0
Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLK 623
LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK
Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALK 106
BLAST of retinoid x vs. SwissProt
Match: gi|1703164|sp|P50569.1|STF1_RAT (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP) HSP 1 Score: 81.6481 bits (200), Expect = 7.267e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237
CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A
Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.7886 bits (177), Expect = 4.325e-12 Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAK 625
LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK +
Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQ 108
BLAST of retinoid x vs. SwissProt
Match: gi|341942103|sp|P33242.3|STF1_MOUSE (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Embryonal LTR-binding protein; Short=ELP; AltName: Full=Embryonal long terminal repeat-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP; AltName: Full=Steroid hydroxylase positive regulator) HSP 1 Score: 81.6481 bits (200), Expect = 7.331e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237
CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A
Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.7886 bits (177), Expect = 4.441e-12 Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAK 625
LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK +
Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQ 108
BLAST of retinoid x vs. SwissProt
Match: gi|49036491|sp|Q95L87.1|STF1_MACEU (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Nuclear receptor subfamily 5 group A member 1) HSP 1 Score: 81.6481 bits (200), Expect = 7.434e-15 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212
CP+C + + +YG TC SC+GFF+R+VQN H + CT S NC ID K C +CR+QKCL GM+ V++ R R
Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQNCKIDKTQRKRCPYCRFQKCLTVGMRLEAVRADRMRGGR 92 HSP 2 Score: 71.633 bits (174), Expect = 1.211e-11 Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 0
Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLKAKDVKRDKVLPISRGLDFE 642
LC VCG + +YG CESC+ FF+R+VQN + Y C S C ID R+ C CR++KCL GM + + +D R + + +KR + LK ++ K L + G E
Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQNCKIDKTQRKRCPYCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALK----QQKKALIRANGFKLE 121
BLAST of retinoid x vs. SwissProt
Match: gi|3121738|sp|Q13285.2|STF1_HUMAN (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; Short=hSF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP) HSP 1 Score: 81.6481 bits (200), Expect = 7.829e-15 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHA 237
CP+C + + +YG TC SC+GFF+R+VQN H + CT S +C ID K C FCR+QKCL GM+ V++ R R ++G + + K Q+ A
Sbjct: 13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGR--NKFGPMYKRDRALKQQKKAQIRA 115 HSP 2 Score: 72.7886 bits (177), Expect = 4.958e-12 Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 0
Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKRE----HKRAKVLK 623
LC VCG + +YG CESC+ FF+R+VQN + Y C S +C ID R+ C CR++KCL GM + + +D R + + +KR + LK
Sbjct: 12 LCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALK 106
BLAST of retinoid x vs. SwissProt
Match: gi|44889025|sp|P49867.2|FTZF1_BOMMO (RecName: Full=Nuclear hormone receptor FTZ-F1; AltName: Full=BmFTZ-F1; AltName: Full=Nuclear receptor subfamily 5 group A member 3) HSP 1 Score: 82.0333 bits (201), Expect = 8.041e-15 Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 0
Query: 498 IDPCSGEDVQAWSTL-SESTLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEER 610
+DP +G + + L + T+ +T+ + V LC VCG + +YG CESC+ FF+R+VQN+ Y C A AC ID R+ C CR++KCL+ GM + + +D R
Sbjct: 55 VDPTTGTGGEPGAYLPTAGTVCDQTDTKDVIEELCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNKK--VYTCVAERACHIDKTQRKRCPFCRFQKCLDVGMKLEAVRADRMR 165 HSP 2 Score: 78.9518 bits (193), Expect = 6.584e-14 Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212
CP+C + + +YG TC SC+GFF+R+VQN+ ++ C C ID K C FCR+QKCL GMK V++ R R
Sbjct: 89 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNKK--VYTCVAERACHIDKTQRKRCPFCRFQKCLDVGMKLEAVRADRMRGGR 168
BLAST of retinoid x vs. SwissProt
Match: gi|12230057|sp|Q9YH33.1|ESR1_ORENI (RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha; AltName: Full=Estradiol receptor; AltName: Full=Nuclear receptor subfamily 3 group A member 1) HSP 1 Score: 81.6481 bits (200), Expect = 1.036e-14 Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 0
Query: 529 RLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRA--KVLKAKDVKRDKVLP 634
R C VC +A + +YG CE C+AFF+RS+Q + YMC A+ C ID R+SC CR KC E GM + D R ++RE +RA + AKD+ + P
Sbjct: 137 RFCAVCSDYASGY-HYGVWSCEGCKAFFKRSIQGHN--DYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGMRKDRGRVLRREKRRACDRDKPAKDLPHTRASP 241 HSP 2 Score: 65.855 bits (159), Expect = 9.850e-10 Identity = 32/97 (32.99%), Postives = 51/97 (52.58%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQ 226
C +CS+ A + +YG +C C+ FF+RS+Q H + C + CTID KSC+ CR +KC + GM ++ R R +R + +P +
Sbjct: 139 CAVCSDYASGY-HYGVWSCEGCKAFFKRSIQG--HNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGMRKDRGRVLRREKRRACDRDKPAK 232
BLAST of retinoid x vs. nr
Match: gi|728054567|gb|AIY67763.1| (HR97a-like receptor 4 [Tigriopus japonicus]) HSP 1 Score: 381.333 bits (978), Expect = 4.864e-120 Identity = 206/434 (47.47%), Postives = 291/434 (67.05%), Query Frame = 0
Query: 474 NFDTSPLEALITDQFIHDILSEDVIDPC----SGEDVQAWSTLSESTLSPKTEDESVSL------RLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLE-QMSRTNPNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAK-LHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895
+FD S LE+ ITDQFI DIL+++ ++P E S +L K + S S RLC VC L AGKHNYYGGQVCESCRAFFRRS+QNQ++P Y CKA C IDSKSR+SCA CR++KCL AGMNPKWII+D+ER+ K E K++K++KAK + +++PI R ++ +FT EE+LKV ++ YA+ K++ +A +A+D PL LW + N + + F+ +E +E +F+ I++GLEEMT++D EDR+TLVQ N +AFFALIMS+Y P +F + + D+T L+ + +PN L N ++TLEV+K+S ++ETFY N ++ LS A R ++ KIQ A+ N P D +I+C+VILNL+F S G+ L + KVER+QN+ FML+RYL+S++ KA KM K +ML +YT E
Sbjct: 5 DFDQS-LESFITDQFICDILTQEPLEPFDLIDEEEPSSNSPISSNDSLPIKIKRSSSSSLQIQCPRLCHVCNLPAGKHNYYGGQVCESCRAFFRRSIQNQTHPIYHCKAKKCCIIDSKSRKSCAWCRFQKCLLAGMNPKWIITDQERKFKLEAKQSKIMKAK--MKQEIVPIQRPVELKFTVEEKLKVERLSKYARKFKVSVLANHLAQDIAPLKTLWKLALNLETPSVDFIHFLEEKETTIFRTIALGLEEMTDLDSEDRETLVQRNSTAFFALIMSIYFNPGDFARHLEDVTEALDIALQANDPNPDLKNAVETLEVIKMSNFPGLSFETFYSNCPNKDENLSNAQRNIMNKIQSALREMPNKPIDAIIICIVILNLIFLSDGSSPLKDGKKVERIQNDQIFMLHRYLRSKYGDKASGKMGKLVMLMSYTQE 435 HSP 2 Score: 129.413 bits (324), Expect = 4.488e-28 Identity = 94/351 (26.78%), Postives = 161/351 (45.87%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVMAGT---FTVEEHQCLFGWYQKWHDFGASKSLDYFCDHVGVFQAILESSYEGKPMSNSAFRSMTKADEYVIVSYYFNEEEIQNLHFDDRMTLIARNFAVLYGLLWGSFSTLDDPDAQMQTY---FDFCLRNAANNPRYHSLLDLWQ-----NFVDNGKRVSPYHCGLIQRDSFPDSLKYRQYINDTEKIGSVMASD-NALDAILMIILNYICFYSTDFPDQLREGEKIKTKQNNYLALLHRY 468
C +C+ AGKH YYG + C SCR FFRRS+QNQ HPI+ C C IDSKS KSC +CR+QKCL AGM P ++ + ++RK + + Q + MK ++ + FTVEE + + F S ++ + + + + + + S + + + + + EE+ +L +DR TL+ RN + L+ + D ++ D L+ NP + ++ + NF G ++ +D + + R +N + M + I ++ILN I + +D L++G+K++ QN+ + +LHRY
Sbjct: 71 CHVCNLPAGKHNYYGGQVCESCRAFFRRSIQNQTHPIYHCKAKKCCIIDSKSRKSCAWCRFQKCLLAGMNPKWIITDQERK------FKLEAKQSKIMKAKMKQEIVPIQRPVELKFTVEEKLKVERLSKYARKFKVSVLANHLAQDIAPLKTLWKLALNLETPSVDFIHFLEEKETTIFRTIALGLEEMTDLDSEDRETLVQRNSTAFFALIMSIYFNPGDFARHLEDVTEALDIALQANDPNPDLKNAVETLEVIKMSNF--PGLSFETFYSNCPNKDENLSNAQ-RNIMNKIQSALREMPNKPIDAIIICIVILNLI--FLSDGSSPLKDGKKVERIQNDQIFMLHRY 410
BLAST of retinoid x vs. nr
Match: gi|657600350|gb|AID52836.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 164.851 bits (416), Expect = 5.560e-40 Identity = 109/354 (30.79%), Postives = 183/354 (51.69%), Query Frame = 0
Query: 128 PKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFK-CTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVMAGTFTVEEHQCLFGWYQKWHDFGASKSLDYFCDHVGVFQAILESSYE---GKPMSNSAFRSMTKADEYVIVSYYFNEEEIQNLHFDDRMTLIARNFAVLYGLLWGSFSTLDDPDAQMQTYFDFCLRNAAN----NPRYHSLLDLWQNFVDNGKRVSPYHCGLIQRDSFPDSLKYRQYINDTEKIGSVM--ASDNALDAILMIILNYICFYSTDFPDQLREGEKIKTKQNNYLALLHRYTTT 471
P CPIC++ AGKH YYG + C+SCRGFF+RSV+N+ H F C G+ NC I ++S K+CK+CR+QKCLQ+GMK YV + ++ K I +K A ++ FT E Y+ FG F + F L + + G M + AF T+ ++ ++Y+F+ +++ +L DRMTLI+ NF ++GLLW +S D + T+++ L++ P +L +++ GK+ + R + +++ N ++ S + +S ++ D I++++L++I ++T+F L++ KI+ Q YL LLHRY T
Sbjct: 89 PLCPICNDVAGKHFYYGVQACISCRGFFQRSVRNRFHLKFICCKGTQNCRITARSRKNCKWCRFQKCLQSGMKTCYVMTHDKSG------LPPKSKLILPIKAMVKT---ANLSQIFTEHEVDKALSIYKNLLSFGYRSYYQLFSQNEQEFMTFLRALNDQGGGPSMISEAF---TETNKQATINYFFSIDDMASLTPFDRMTLISHNFPSIFGLLWSVYSYTPD----LCTFYEEFLKHGYEFRDREPEIDKILMVFEANQLLGKKPKNLTIDVTFRSNSATQDLIQRHDNLVHEVNSGLRESSQSSADYIIVMLLSHIIMFATEFAVSLQDKAKIQATQEKYLVLLHRYLRT 426 HSP 2 Score: 128.257 bits (321), Expect = 1.218e-27 Identity = 89/363 (24.52%), Postives = 168/363 (46.28%), Query Frame = 0
Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYM-CKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNV-RLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGA-KLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALML 889
LC +C AGKH YYG Q C SCR FF+RSV+N+ + ++ CK + C I ++SR++C CR++KCL++GM ++++ + K K+K + K + + L FT E K + I + +++ + ++ P E K +++M + DR TL+ N + F L+ S+YS + + + + P + ++ V + ++L P N TF N + + L + H LV ++ + + D +IV L+ ++F + A L +KAK++ Q + +L+RYL++ + +A +K+++ +M+
Sbjct: 90 LCPICNDVAGKHFYYGVQACISCRGFFQRSVRNRFHLKFICCKGTQNCRITARSRKNCKWCRFQKCLQSGMKTCYVMTHD--------KSGLPPKSKLILPIKAMVKTANLSQIFTEHEVDKALSIYKNLLSFGYRSYYQLFSQNEQEFMTFLRALNDQGGGPSMISEAFTETNKQATINYFFSIDDMASLTPFDRMTLISHNFPSIFGLLWSVYSYTPDLCTFYEEFLKHGYEFRDREPEIDKILMVFEANQLLGKKPKNLTIDVTFRSN--SATQDLIQRHDNLVHEVNSGLRESSQSSADYIIVMLLSHIIMFATEFAVSLQDKAKIQATQEKYLVLLHRYLRTHYQGRARAKLSETMMI 442
BLAST of retinoid x vs. nr
Match: gi|657600348|gb|AID52835.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 151.754 bits (382), Expect = 2.425e-35 Identity = 114/389 (29.31%), Postives = 186/389 (47.81%), Query Frame = 0
Query: 518 SPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENRE---KALFQGISMGLEEMTEIDVEDRQTLVQENGSAF--------FALIMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895
+P+T + S R C VC +GKH+YYG QVC SCRAFFRRS N ++ + CK S C I+SKS +SC CRY+KCL AGM W+++DEE RV+R R ++ K ++ V + ++TT+EE ++ Q RN +A + + D + N P + R + + IS L M +I DR L+ N + F + I F K + RTL+ S PN + ++ T + KLS ++ + N+ +++++ L+T IQ D++++ L+ + L+F S KL ++ V ++QN + +MLYRY+ + KA K+ + + + + E
Sbjct: 95 TPRTPNLSKPHRECPVCDNPSGKHSYYGAQVCFSCRAFFRRSTINSTFTEFQCKDSKTCGINSKSWKSCKFCRYQKCLSAGMKSTWVLNDEE-RVQRNANRKRLRK---IREAGVAFSETFIGNQWTTDEEHQIRQARNDFLLKGFGVIAQFCSSNPNIFDRYVDCL--NGNTPFDPMLVGYTRRFIYSEVMKSIS-DLLIMKDIHPVDRFLLLSHNYPLWVSFEEAVQFRNHQEMEKIQQTFSKCI----RTLKSSSDLWPNANIDHLQRTFD--KLSVHDNANFLDKLNNLI-TDQSMRRRRTQLITSIQSWPKISSRGLADDILLTLMTMILIFSSDSLKLQSEGVVSKIQNQYCYMLYRYVNFKSPGKAHVKLGEGMEIVSKVRE 469 HSP 2 Score: 129.413 bits (324), Expect = 7.375e-28 Identity = 125/435 (28.74%), Postives = 190/435 (43.68%), Query Frame = 0
Query: 97 MDLLS-QEFFNSKPNPHDTIIV------------SAEFRPTQTLP-------KCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVMAGTFTV-EEHQCLFGWYQKWHDF---GASKSLDYFCDHVGVFQAILESSYEGKPMSNSAFRSMTKADEYVIVSYYFNEEEI-QNLHFDDRMTLIARNFAVLYGLLWGSFSTL-----DDPDAQMQTYFDFCLRNAANNPRYHSLLDLWQNF-VDNGKRVSPYHCGLIQRDSFPDSLKYRQYIND-----------TEKIGSV-----MASDNALDAILMIILNYICFYSTDFPDQLREGEKIKTKQNNYLALLHRYTTTMINFDTSPLEALI 484
+D +S QE N P DT + S++F T P +CP+C N +GKH+YYGA+ C SCR FFRRS N F+C S C I+SKSWKSCKFCRYQKCL AGMK +V + E+R +R R +K + + S + +T EEHQ Q +DF G + + +F ++ P + T+ Y V ++ I +++H DR L++ N+ LW SF ++Q F C+R ++ DLW N +D+ +R + S D+ + +N+ T+ I S+ ++S D IL+ ++ I +S+D EG + QN Y +L+RY +NF SP +A +
Sbjct: 55 LDTISLQELMNVAPVECDTQTITNDPNIVSQTEDSSDFSDTPRTPNLSKPHRECPVCDNPSGKHSYYGAQVCFSCRAFFRRSTINSTFTEFQCKDSKTCGINSKSWKSCKFCRYQKCLSAGMKSTWVLNDEERVQRNANRKRLRKIREAGVAFS-----ETFIGNQWTTDEEHQI----RQARNDFLLKGFGVIAQFCSSNPNIFDRYVDCLNGNTPF-DPMLVGYTRRFIYSEVMKSISDLLIMKDIHPVDRFLLLSHNYP-----LWVSFEEAVQFRNHQEMEKIQQTFSKCIRTLKSSS------DLWPNANIDHLQRT-------FDKLSVHDNANFLDKLNNLITDQSMRRRRTQLITSIQSWPKISSRGLADDILLTLMTMILIFSSDSLKLQSEG-VVSKIQNQYCYMLYRY----VNF-KSPGKAHV 455
BLAST of retinoid x vs. nr
Match: gi|657600346|gb|AID52834.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 144.821 bits (364), Expect = 5.854e-33 Identity = 113/392 (28.83%), Postives = 193/392 (49.23%), Query Frame = 0
Query: 531 CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKR-EHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELKVMQIRN--YAKTCKLNHMALTMAK--DGGPLTVLWDVIFNKQNVPLKFLETVENR---EKALF----QGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNVRLT--------------NVLDTLEVL-KLSPGNHPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895
C VCG +GKH YYG QVC SCRAFFRRS N + + CKA C IDSKS +SC CR++KCL AGM P W+++DEER + + KR + + +V + VL ++T +E+L++ IR + KT + +AK P+ I N KF+ NR + L + +S G+ +M + L N F L+ Y++ ++F++ + L + +++ + NVR + NV E + K+S ++ N+ Q +T + R+L+T IQ N D+++ L+++ L+ +L++++ V + QN + ++LYRY+ S++ +A SK+ + + + + E
Sbjct: 115 CPVCGNPSGKHLYYGAQVCSSCRAFFRRSTINSAAEEFRCKADKKCGIDSKSWKSCKFCRFQKCLSAGMRPNWVMNDEERTQRNAKRKRTRTKRVDNVVSEAVLS------HQWTVDEDLQIRGIREEIFEKT------SCIIAKFYADNPM------ILN------KFIACANNRTPFDSVLLAYTKRFVSNGMMKM----FNELLVLQHINPMDRFLLLSRNYAMWSSFEEAI--LFKNRQEVIKNQQNVRNSLNKIKTSADGDQAFNVDMIQEAMDKISLEDNVESSDVIDNLIQDQQT-RDRRRSLITSIQAWPKFNANGVSDDILTTLMMMILICCPDALQLNSESAVSQFQNQYCYILYRYINSKYPGQAHSKLGEGMEIVSKVRE 475 HSP 2 Score: 137.887 bits (346), Expect = 1.125e-30 Identity = 108/360 (30.00%), Postives = 173/360 (48.06%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVMAGTFTVEEHQCLFGWYQKWHDFGASKSLDYFCDHVGVFQAILESSYEGKPMSNSAFRSMTKADEYVIVSYYFNEEEI-QNLHFDDRMTLIARNFAVLYGLLWGSF-STLDDPDAQMQTYFDFCLRNAANNPRYHS------LLDLWQNFVD-----NGKRVSPYHCGLIQRDSFPDSLKYRQYINDTE---KIGSVMASDNALDAILMIILNYICFYSTDFPD--QLREGEKIKTKQNNYLALLHRYTTT 471
CP+C N +GKH YYGA+ C SCR FFRRS N F+C C IDSKSWKSCKFCR+QKCL AGM+P +V + E+R +R +R K+++ +++ + AV++ +TV+E + G ++ + + ++ D+ + + + P +S + TK + FNE + Q+++ DR L++RN+A +W SF + + Q +RN+ N + + +D+ Q +D + S LIQ D + R I + K + SD+ L ++M+IL IC PD QL + QN Y +L+RY +
Sbjct: 115 CPVCGNPSGKHLYYGAQVCSSCRAFFRRSTINSAAEEFRCKADKKCGIDSKSWKSCKFCRFQKCLSAGMRPNWVMNDEERTQRNAKR---KRTRTKRVDNVVS---EAVLSHQWTVDEDLQIRGIREEIFEKTSCIIAKFYADNPMILNKFIACANNRTPF-DSVLLAYTKRFVSNGMMKMFNELLVLQHINPMDRFLLLSRNYA-----MWSSFEEAILFKNRQEVIKNQQNVRNSLNKIKTSADGDQAFNVDMIQEAMDKISLEDNVESSDVIDNLIQDQQTRD--RRRSLITSIQAWPKFNANGVSDDILTTLMMMIL--IC-----CPDALQLNSESAVSQFQNQYCYILYRYINS 453
BLAST of retinoid x vs. nr
Match: gi|657600344|gb|AID52833.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 143.665 bits (361), Expect = 3.371e-32 Identity = 108/392 (27.55%), Postives = 183/392 (46.68%), Query Frame = 0
Query: 512 LSESTLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEE--RRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELKVMQIRN-YAKTCKLNHMALTMAKDGGP--LTVLWDVIFNKQNVPLKFLETVENREKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGNHP--TYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSK-MAKALMLTTYTTE 895
L +ST+ P D + C +C AGKHNYYGG+ C SCRAFFRR+VQ++ Y + C C+I+ K+RRSC CR++KCL +GM W++ D E RR + HK AK ++ KV+ E ++ IR + K L +L P + L + + + F++ + + EE + DR+ L++ NG +++ + ++ + L +EQ +++ L ++++ L L ++ P Y FY + S+K + L+ K++ +P DE+ + L + + F L ++ VE +Q + ML+RYL R+ KA +K +A LM++TY E
Sbjct: 177 LPKSTMPPSNWDNTK----CYICQEKAGKHNYYGGKACPSCRAFFRRAVQSKYYEIFFCNKGEKCEINLKTRRSCQFCRFKKCLASGMRVAWVLPDGERNRRFNKLHKSAKKNNSQIEGDLKVVAKKPKGPLEIQGVLPGEIDMIRGVHMKVDSLGAKSLREFILAQPEFMKKLANFSYFGGQPDMDFIQKFQLMCDRFAHFVLTTSEEFKMLSFGDRRQLIEVNGP-----LLNRFKCSVTIQETNSCLVNGIEQATKSGEFPYLNDIVEKLAQLNMT-DRKPILAYNQFYASPWASSKEAEGRYFNLMIKMKAWPRDNIASPVDEIQMTLAKMIIAFSPDFLNLEQRSVVEAIQMKYVSMLHRYLVFRYGAKAATKRLAAGLMMSTYARE 558 HSP 2 Score: 120.168 bits (300), Expect = 1.539e-24 Identity = 83/250 (33.20%), Postives = 121/250 (48.40%), Query Frame = 0
Query: 106 NSKPNPHDTIIVSAEFRPTQTLP-------KCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMK---------LQMHAVMAGTFTVEEHQCLFGWYQKWHDFGASKSLDYFCDHVGVFQAILE--SSYEGKPMSN--SAFRSMTKADEYVIVSYYFNEEEIQNLHFDDRMTLIARNFAVL 335
N +P + S E P T+P KC IC AGKH YYG + C SCR FFRR+VQ++++ IF C C I+ K+ +SC+FCR++KCL +GM+ A+V +R R + + S K +QI G +K L++ V+ G E + G + K GA KSL F F L S + G+P + F+ M + +++ EE + L F DR LI N +L
Sbjct: 161 NPEPQKSPGALDSEENLPKSTMPPSNWDNTKCYICQEKAGKHNYYGGKACPSCRAFFRRAVQSKYYEIFFCNKGEKCEINLKTRRSCQFCRFKKCLASGMRVAWVLPDGERNRRFNKLHKSAKKNNSQIEGDLKVVAKKPKGPLEIQGVLPG-----EIDMIRGVHMKVDSLGA-KSLREFILAQPEFMKKLANFSYFGGQPDMDFIQKFQLMCDRFAHFVLT---TSEEFKMLSFGDRRQLIEVNGPLL 401
BLAST of retinoid x vs. nr
Match: gi|728054565|gb|AIY67762.1| (HR97a-like receptor 6 [Tigriopus japonicus]) HSP 1 Score: 138.658 bits (348), Expect = 7.807e-31 Identity = 116/403 (28.78%), Postives = 188/403 (46.65%), Query Frame = 0
Query: 510 STLSESTLSPKTEDESVSLRL-CQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLP---ISRGLDFEFTTEEELKVMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVI---FNKQNVPL----KFLETVENREKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSI----PNNFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVSQSNKTLS------EAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTT 891
S +S +S E E++ +L C VCG AGKH YYGGQVC SCRAFFRR+V +SY + C C I+SKS +SC CR++KCL++GM W+ ++++ + +AK K ++P I R + ++T EEE V N+A + + A+ + V F+ +N P +F + N E + F+ +M ++ D++ LV EN F L + + + +L D + R + + NV+ L LS +HP + N + S LS +L+T+IQ F + P D ++ L+ ++F + L + KV +Q F ML RYLK++ ++A K+ +A+ T
Sbjct: 84 SDVSFKQVSSSVEPEAIKTQLICLVCGNAAGKHCYYGGQVCVSCRAFFRRAVLGKSYSEFKCSKEEQCVINSKSWKSCRFCRFQKCLQSGMRIAWVTTEDKPSGPSKGSKAK------PKGKLIVPTSAIQRSIQLKWTLEEECYVRGFYNHAWENWCHVITDFYARHPVYFASIISVFLLDFSVENNPFMTKSEFYGQMVNMELS-FKRFWFTHPDMNDLCQADQEQLVNENNDLIFTLCRCVQYLNAQDVAKYSRLYRDRLK-----ERASQDESCQNVVAMLSNFTLS--DHPE-DNITPNTTTSLCLLSADDESKSLESSLMTEIQEWNRLFPHGPCDPIMQTLMGYLIIFDPNMKNLQDYKKVCDIQTKFLHMLQRYLKAKVPKQATKKIGQAVEFIT 471 HSP 2 Score: 127.487 bits (319), Expect = 3.200e-27 Identity = 107/406 (26.35%), Postives = 182/406 (44.83%), Query Frame = 0
Query: 86 DLSEFMDEQTIMDLLSQEFFNSKPNPHDT----IIVSAEFRPTQTLPKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVMAGT---FTVEEHQCLFGWY----QKW----HDFGASKSLDYFCDHVGVFQAILESSYEGKP-MSNSAFRSMTKADEYVIVSYYFNEEEIQNLHFDDRMTLIARNFAVLYGLL-WGSFSTLDDPDAQMQTYFDFCLRNAANNPRYHSLLDLWQNFV------DNGKRVSPYHCGLIQRDSFPDSLKYRQYINDTEKIGSVMASDNALDAILMIILNYICFYSTDFPDQLREGEKIKTKQNNYLALLHRY 468
DL F+ E ++ Q +S+ D + S E +T C +C N+AGKH YYG + C+SCR FFRR+V + + FKC+ C I+SKSWKSC+FCR+QKCLQ+GM+ A+V ++++ G K + G + + A+ +T+EE + G+Y + W DF A + YF + VF +L+ S E P M+ S F E ++F ++ +L D+ L+ N +++ L + D + Y D A+ + +++ + NF DN + L+ D SL+ E + + D I+ ++ Y+ + + + L++ +K+ Q +L +L RY
Sbjct: 58 DLESFLHESNVVSKSPQISDDSEMCKSDVSFKQVSSSVEPEAIKTQLICLVCGNAAGKHCYYGGQVCVSCRAFFRRAVLGKSYSEFKCSKEEQCVINSKSWKSCRFCRFQKCLQSGMRIAWVTTEDKPS-------GPSKGSKAKPKGKLIVPTSAIQRSIQLKWTLEEECYVRGFYNHAWENWCHVITDFYARHPV-YFASIISVF--LLDFSVENNPFMTKSEFYGQMVNMELSFKRFWFTHPDMNDLCQADQEQLVNENNDLIFTLCRCVQYLNAQDVAKYSRLYRDRLKERASQDESCQNVVAMLSNFTLSDHPEDNITPNTTTSLCLLSADDESKSLESSLMTEIQE--WNRLFPHGPCDPIMQTLMGYLIIFDPNMKN-LQDYKKVCDIQTKFLHMLQRY 450
BLAST of retinoid x vs. nr
Match: gi|657600342|gb|AID52832.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 135.191 bits (339), Expect = 3.342e-30 Identity = 115/386 (29.79%), Postives = 174/386 (45.08%), Query Frame = 0
Query: 529 RLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMC-KASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEE-------LKVMQ---IRNYAKTCK-----LNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVENREKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFAL--IMSLYSIPNNFKKLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGN-HPTYETFYGNVSQSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKLHNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE 895
R+CQVCG AG+HNYYGGQ C CRAFFRR VQ +C S C ++ +RR C CR+ +CL GM P W++SD ER +R K A A + K P+S + T + +K+M +RN C + MA+ M+ GG D F ++ F +N +FQ +S L E + V+D+Q LV+ NG AL +SL+ F LE+ ++ L + L+ +S Y + + ++ E H LV K+Q + D++ + L+ L ++F S L VE+ Q F +L +Y+K R+ +AG ++ LML +Y E
Sbjct: 45 RICQVCGDEAGQHNYYGGQSCSGCRAFFRRIVQRDLQANLICVDNSNECVVNKSTRRRCQFCRFHRCLAIGMRPGWVLSDHERE-RRYRKTANGSHAVSIATQKS-PVSNRISLLVLTTNDNTHITAHMKMMDAHFVRNMDVVCAQKQDFIRKMAV-MSYFGGQS----DFEFYEE-----FYSLCDN---FVFQVMSSVL-EFRSLPVQDQQELVRVNGQYMVALKYAVSLHETDWCFVYF-------LERALKSGKFPYLNDFAQELDAFGMSEHKPRLMYSQVFSSPWAASAADEERHLFLVNKMQSWPRKDAQDRVDDVQMNLLKLIILFSSEFVNLQRPDIVEQTQMKFIGLLQKYMKFRYGPEAGVRLGNGLMLLSYAKE 407 HSP 2 Score: 86.2705 bits (212), Expect = 5.032e-14 Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGN-CTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKER 212
C +C + AG+H YYG ++C CR FFRR VQ C + N C ++ + + C+FCR+ +CL GM+P +V S +R+ R
Sbjct: 47 CQVCGDEAGQHNYYGGQSCSGCRAFFRRIVQRDLQANLICVDNSNECVVNKSTRRRCQFCRFHRCLAIGMRPGWVLSDHERERR 130
BLAST of retinoid x vs. nr
Match: gi|1325306415|ref|XP_023334818.1| (oxysterols receptor LXR-alpha-like [Eurytemora affinis]) HSP 1 Score: 120.168 bits (300), Expect = 9.642e-27 Identity = 60/161 (37.27%), Postives = 96/161 (59.63%), Query Frame = 0
Query: 520 KTEDESVSLRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKRDKVL---PISRGLDFEFTTEEEL----KVMQIRNYAKTCKLNHMALTMAKD 673
K E++ R C+VCG AG+H+YYGGQVC SCRAFFRRSV + + Y C +G C+++SK+R+ C CRY C +AGM W+++D E+++K + K + D+V +S F +E EL ++++I ++ +T K+N M T+ ++
Sbjct: 33 KDENDDDIFRACKVCGEEAGRHSYYGGQVCASCRAFFRRSVNSGANKAYFCVKNGNCEVNSKTRKQCQYCRYRLCEDAGMKTSWVLTDTEKKLKSSEGKEGKQKRNSIDYDEVSNPPSLSGESSSIFISETELVLINELVEISDFWETSKVNDMDTTLIRE 193 HSP 2 Score: 92.8189 bits (229), Expect = 2.285e-17 Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0
Query: 130 CPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRK 210
C +C AG+H+YYG + C SCR FFRRSV + + + C +GNC ++SK+ K C++CRY+ C AGMK ++V + ++K
Sbjct: 44 CKVCGEEAGRHSYYGGQVCASCRAFFRRSVNSGANKAYFCVKNGNCEVNSKTRKQCQYCRYRLCEDAGMKTSWVLTDTEKK 124
BLAST of retinoid x vs. nr
Match: gi|1325265241|ref|XP_023336689.1| (oxysterols receptor LXR-alpha-like [Eurytemora affinis]) HSP 1 Score: 119.398 bits (298), Expect = 5.099e-24 Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0
Query: 530 LCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMC-KASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAK 620
+CQVCG AGKH+YYGGQVC SCRAFFRRSVQ++ Y + C S +C I+ +R++C CRY KCL GM P WI+S+EE R++R H R K
Sbjct: 183 VCQVCGEKAGKHSYYGGQVCPSCRAFFRRSVQSRCYTGFRCINRSESCPINLLTRKNCQYCRYHKCLSCGMRPSWILSEEE-RIRRFHGRTK 273 HSP 2 Score: 100.523 bits (249), Expect = 4.785e-18 Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 0
Query: 128 PKCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTG-SGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQRYGSK 220
P C +C AGKH+YYG + C SCR FFRRSVQ++ + F+C S +C I+ + K+C++CRY KCL GM+P+++ S+E+R R R K
Sbjct: 182 PVCQVCGEKAGKHSYYGGQVCPSCRAFFRRSVQSRCYTGFRCINRSESCPINLLTRKNCQYCRYHKCLSCGMRPSWILSEEERIRRFHGRTKGK 275
BLAST of retinoid x vs. nr
Match: gi|657600356|gb|AID52839.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 111.694 bits (278), Expect = 1.492e-21 Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 0
Query: 499 DPCSGEDVQAWSTLSESTLSPKTEDESVS-LRLCQVCGLHAGKHNYYGGQVCESCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMNPKWIISDEERRVKREHKRAKVLKAKDVKR 629
DP G Q + S K E+ +S C+VCG A +H +YG C SCRAFFRRS+QN+++ Y C+ G C+I KSR++C CRYE+CL AGM P W++S+EER + R K + ++
Sbjct: 55 DPGEGPSEQNDVRMHSSGKKCKKENPLISDTEKCRVCGEPAARHVHYGSVTCFSCRAFFRRSIQNKAWNNYSCRRQGQCEIMLKSRKNCQKCRYEECLSAGMKPTWVLSEEERSRRFRKTREKKARQNSTRK 186 HSP 2 Score: 101.293 bits (251), Expect = 3.162e-18 Identity = 53/137 (38.69%), Postives = 76/137 (55.47%), Query Frame = 0
Query: 129 KCPICSNSAGKHTYYGARTCLSCRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKPAYVQSQEQRKERILQ-----------RYGSKKSQP----------NQINGSMKL--QMHAVMAGT 242
KC +C A +H +YG+ TC SCR FFRRS+QN+ + C G C I KS K+C+ CRY++CL AGMKP +V S+E+R R + R ++ S+P +QI GS KL + H+ + G+
Sbjct: 87 KCRVCGEPAARHVHYGSVTCFSCRAFFRRSIQNKAWNNYSCRRQGQCEIMLKSRKNCQKCRYEECLSAGMKPTWVLSEEERSRRFRKTREKKARQNSTRKSNEGSEPETNNGQGNEDDQIPGSSKLDTRTHSTLHGS 223 The following BLAST results are available for this feature:
BLAST of retinoid x vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 24
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BLAST of retinoid x vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of retinoid x vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold42_size484952:476100..483829+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold42_size484952-snap-gene-3.25 ID=maker-scaffold42_size484952-snap-gene-3.25|Name=retinoid x|organism=Tigriopus kingsejongensis|type=gene|length=7730bp|location=Sequence derived from alignment at scaffold42_size484952:476100..483829+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'retinoid x' has the following synonyms
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