---NA---, maker-scaffold534_size144770-snap-gene-0.33 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of ---NA--- vs. L. salmonis genes
Match: EMLSAG00000012318 (supercontig:LSalAtl2s:LSalAtl2s89:235066:236526:-1 gene:EMLSAG00000012318 transcript:EMLSAT00000012318 description:"maker-LSalAtl2s89-snap-gene-2.20") HSP 1 Score: 193.356 bits (490), Expect = 5.664e-57 Identity = 109/270 (40.37%), Postives = 145/270 (53.70%), Query Frame = 0
Query: 27 IGLSVLACVPMFILTHPGDECLLFVSVRGEALIYGNPAGCHFIAYGHGCVIVGALIMSFLLFFPHRRKGFVKRDLKDTPSNRYPICHQVSFNGAALLLAQHFRSLPGTLPEQMSNGIGQSSMSMNSRHIIGRIYSTKVILLCTCLTMFTVVMATVVLSGYLVSCDELAYETRRQLYGRTTLGTPIKNLEMACYSLFRDVDFHTRFHFDHYEYSSNWHGQYRHYKHGRVHQYSSKHEHIIPVAAALEMSLGGTWIGALLWCVLLGILIYQR 296
I +S V MFILT+PGDECLLF SVRG ALIYGNP GC++++YGH +I A+ FLL +V R K S R GQS +S+ RI S+ I + F+++++ V L+GYL SC+EL YE + QLY R T+G P + L+M+C SLF D DFH RFH DHYEYS ++GQ R YKHGRVH HEH++P+ ALE SL ++ +W ++ + R
Sbjct: 20 ILVSSATSVLMFILTYPGDECLLFTSVRGHALIYGNPVGCNYVSYGHCFLIASAI---FLL-------XYVSRSNKRDESTR-----------------------------------GQSQISVR----FPRISSSFAIGFALFIFFFSLLISAVSLAGYLTSCNELHYEAKNQLYARLTIGNPYRFLQMSCSSLFSDDDFHNRFHHDHYEYSGMFYGQNRGYKHGRVHNVVQDHEHLLPLQIALEGSLAASFFXWFIWLIISIFMFLNR 240
BLAST of ---NA--- vs. nr
Match: gi|1325335235|ref|XP_023349443.1| (mediator of RNA polymerase II transcription subunit 15-like isoform X2 [Eurytemora affinis]) HSP 1 Score: 271.937 bits (694), Expect = 6.108e-79 Identity = 162/419 (38.66%), Postives = 231/419 (55.13%), Query Frame = 0
Query: 21 LALLGCIGLSVLACVPMFILTHPGDECLLFVSVRGEALIYGNPAGCHFIAYGHGCVIVGALIMSFLLFFPHRRKGFVKRDLKDTPSNRYPICHQVSFNGAALLLAQHFRSLPGTLPEQMSNGIGQSSMSMNSRHIIGRIYSTKVILLCTCLTMFTVVMATVVLSGYLVSCDELAYETRRQLYGRTTLGTPIKNLEMACYSLFRDVDFHTRFHFDHYEYSSNWHGQYRHYKHGRVHQYSSKHEHIIPVAAALEMSLGGTWIGALLWCVLLGILIYQRCIQKRQQNRELAESIEDARIYASSRDGVM-------MHPMDQMSVTSSSHQSSVLTQKPQ--MSMNPSII--------GSNSMMSPTPLPHGHHNGSFDQQSPQSQVQYVQLANGVLVPMSSLPPQQQQQVSQNTYAQLQFPP 422
L LLG I S+ +PM ++T+PGDECLLF SVRGEALIYG+ AGC ++ H ++V +L F++FF R +G ++D T SN RSL G++ G+ Q+ I+ + +++L LT+F + A ++LSGY+V+C EL YETRRQLYGRTTLG+P+K++ + C+SLFRD DFH RFHFDHYE + WHGQY YKHGR + +S KH H IP+A +E+SL +W+ ++W + +L R K +E+AESIEDARI+A+ V +H + V + H ++ + + Q MS PS I S M + H +G++ S + YVQL NGVL + S+ P Q V Y++L F P
Sbjct: 15 LLLLGVI-CSLGVAIPMLLITYPGDECLLFTSVRGEALIYGHHAGCIYVTVSHFLMVVASLFF-FVMFFWSRAQG-SRQD--GTASN---------------------RSLRGSVA-----GLSQT--------IVRTKITLSILVLSIILTIFVFLTAIIILSGYIVTCGELQYETRRQLYGRTTLGSPVKDVYITCWSLFRDADFHNRFHFDHYELAGQWHGQYTTYKHGRPNTWSGKHNHHIPIAVGMELSLACSWLSVVIWVAITSLLSLLRKHVKALNRKEIAESIEDARIWAADMASVGGGGGGTSLHQYEM--VNKNKHYDTIRSVRSQSRMSGAPSAITQQTQLPHASTLMEHQEVIAKTHEDGTYFMTSDGN---YVQLVNGVLTNV-SVTPMMQGAVQ---YSELVFQP 385
BLAST of ---NA--- vs. nr
Match: gi|1325335233|ref|XP_023349442.1| (uncharacterized protein LOC111718159 isoform X1 [Eurytemora affinis]) HSP 1 Score: 271.166 bits (692), Expect = 1.041e-78 Identity = 162/419 (38.66%), Postives = 231/419 (55.13%), Query Frame = 0
Query: 21 LALLGCIGLSVLACVPMFILTHPGDECLLFVSVRGEALIYGNPAGCHFIAYGHGCVIVGALIMSFLLFFPHRRKGFVKRDLKDTPSNRYPICHQVSFNGAALLLAQHFRSLPGTLPEQMSNGIGQSSMSMNSRHIIGRIYSTKVILLCTCLTMFTVVMATVVLSGYLVSCDELAYETRRQLYGRTTLGTPIKNLEMACYSLFRDVDFHTRFHFDHYEYSSNWHGQYRHYKHGRVHQYSSKHEHIIPVAAALEMSLGGTWIGALLWCVLLGILIYQRCIQKRQQNRELAESIEDARIYASSRDGVM-------MHPMDQMSVTSSSHQSSVLTQKPQ--MSMNPSII--------GSNSMMSPTPLPHGHHNGSFDQQSPQSQVQYVQLANGVLVPMSSLPPQQQQQVSQNTYAQLQFPP 422
L LLG I S+ +PM ++T+PGDECLLF SVRGEALIYG+ AGC ++ H ++V +L F++FF R +G ++D T SN RSL G++ G+ Q+ I+ + +++L LT+F + A ++LSGY+V+C EL YETRRQLYGRTTLG+P+K++ + C+SLFRD DFH RFHFDHYE + WHGQY YKHGR + +S KH H IP+A +E+SL +W+ ++W + +L R K +E+AESIEDARI+A+ V +H + V + H ++ + + Q MS PS I S M + H +G++ S + YVQL NGVL + S+ P Q V Y++L F P
Sbjct: 15 LLLLGVI-CSLGVAIPMLLITYPGDECLLFTSVRGEALIYGHHAGCIYVTVSHFLMVVASLFF-FVMFFWSRAQG-SRQD--GTASN---------------------RSLRGSVA-----GLSQT--------IVRTKITLSILVLSIILTIFVFLTAIIILSGYIVTCGELQYETRRQLYGRTTLGSPVKDVYITCWSLFRDADFHNRFHFDHYELAGQWHGQYTTYKHGRPNTWSGKHNHHIPIAVGMELSLACSWLSVVIWVAITSLLSLLRKHVKALNRKEIAESIEDARIWAADMASVGGGGGGTSLHQYEM--VNKNKHYDTIRSVRSQSRMSGAPSAITQQTQLPHASTLMEHQEVIAKTHEDGTYFMTSDGN---YVQLVNGVLTNV-SVTPMMQGAVQ---YSELVFQP 385 The following BLAST results are available for this feature:
BLAST of ---NA--- vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of ---NA--- vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of ---NA--- vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold534_size144770:111786..115428+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold534_size144770-snap-gene-0.33 ID=maker-scaffold534_size144770-snap-gene-0.33|Name=---NA---|organism=Tigriopus kingsejongensis|type=gene|length=3643bp|location=Sequence derived from alignment at scaffold534_size144770:111786..115428+ (Tigriopus kingsejongensis)back to top Synonyms
The feature '---NA---' has the following synonyms
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