72 kda type iv collagenase, maker-scaffold876_size86062-snap-gene-0.26 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 72 kda type iv collagenase vs. L. salmonis genes
Match: EMLSAG00000007729 (supercontig:LSalAtl2s:LSalAtl2s44:635264:638187:-1 gene:EMLSAG00000007729 transcript:EMLSAT00000007729 description:"maker-LSalAtl2s44-augustus-gene-6.6") HSP 1 Score: 49.2914 bits (116), Expect = 3.150e-8 Identity = 24/64 (37.50%), Postives = 39/64 (60.94%), Query Frame = 0 Query: 47 CFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHSQCQPDCSVNNCPV 110 C T + C+FPF++ G+TYD+C T ++ G WC+T +A + QG+ C +C V++CP Sbjct: 176 CATISGVSCTFPFKYNGKTYDACTTADNS-GSPWCATSVNAQGEY-QGY-GNCNTNCQVSSCPT 236
BLAST of 72 kda type iv collagenase vs. L. salmonis genes
Match: EMLSAG00000011493 (supercontig:LSalAtl2s:LSalAtl2s795:239914:241586:-1 gene:EMLSAG00000011493 transcript:EMLSAT00000011493 description:"maker-LSalAtl2s795-augustus-gene-1.13") HSP 1 Score: 45.4394 bits (106), Expect = 5.794e-7 Identity = 21/65 (32.31%), Postives = 33/65 (50.77%), Query Frame = 0 Query: 41 LCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHV--QGFHSQCQPDC 103 LC + +++ C FPF G+T+ SC T+ +G+ WCST+ H+ GF C +C Sbjct: 25 LCNVVENASKNNMSCQFPFILNGKTHYSCTTIQDDEGKHWCSTRVTDREIHIGSMGFWGHCSDEC 89
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|116856|sp|P08253.2|MMP2_HUMAN (RecName: Full=72 kDa type IV collagenase; AltName: Full=72 kDa gelatinase; AltName: Full=Gelatinase A; AltName: Full=Matrix metalloproteinase-2; Short=MMP-2; AltName: Full=TBE-1; Contains: RecName: Full=PEX; Flags: Precursor) HSP 1 Score: 58.151 bits (139), Expect = 8.917e-10 Identity = 27/61 (44.26%), Postives = 33/61 (54.10%), Query Frame = 0 Query: 39 HGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT + PC FPFRF+G +YDSC T G TDG WC T D + GF Sbjct: 271 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGF 331
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|75049982|sp|Q9GLE5.1|MMP2_BOVIN (RecName: Full=72 kDa type IV collagenase; AltName: Full=72 kDa gelatinase; AltName: Full=Matrix metalloproteinase-2; Short=MMP-2; Contains: RecName: Full=PEX; Flags: Precursor) HSP 1 Score: 56.225 bits (134), Expect = 3.601e-9 Identity = 28/62 (45.16%), Postives = 33/62 (53.23%), Query Frame = 0 Query: 38 SHGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT D PC FPFRF+G +YDSC T G TDG WC T D + GF Sbjct: 271 KYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKEYGF 332
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|2499908|sp|Q90611.1|MMP2_CHICK (RecName: Full=72 kDa type IV collagenase; AltName: Full=72 kDa gelatinase; AltName: Full=Gelatinase A; AltName: Full=Matrix metalloproteinase-2; Short=MMP-2; Flags: Precursor) HSP 1 Score: 55.4546 bits (132), Expect = 7.597e-9 Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0 Query: 38 SHGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C S FT D PC FPF+F+G++YD C T G TDG WC T D + GF Sbjct: 267 KYGFCPHESLFTMGGNGDGQPCKFPFKFQGQSYDQCTTEGRTDGYRWCGTTEDYDRDKKYGF 328
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|146345459|sp|P33436.2|MMP2_RAT (RecName: Full=72 kDa type IV collagenase; AltName: Full=72 kDa gelatinase; AltName: Full=Gelatinase A; AltName: Full=Matrix metalloproteinase-2; Short=MMP-2; Contains: RecName: Full=PEX; Flags: Precursor) HSP 1 Score: 54.6842 bits (130), Expect = 1.175e-8 Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0 Query: 38 SHGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT D PC FPFRF+G +Y+SC T G TDG WC T D + GF Sbjct: 270 KYGFCPHEALFTMGGNGDGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGF 331
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|461766|sp|P33434.1|MMP2_MOUSE (RecName: Full=72 kDa type IV collagenase; AltName: Full=72 kDa gelatinase; AltName: Full=Gelatinase A; AltName: Full=Matrix metalloproteinase-2; Short=MMP-2; Contains: RecName: Full=PEX; Flags: Precursor) HSP 1 Score: 54.299 bits (129), Expect = 1.571e-8 Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0 Query: 38 SHGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT D PC FPFRF+G +Y+SC T G TDG WC T D + GF Sbjct: 270 KYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGF 331
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|1705979|sp|P50757.1|MMP2_RABIT (RecName: Full=72 kDa type IV collagenase; AltName: Full=72 kDa gelatinase; AltName: Full=Gelatinase A; AltName: Full=Matrix metalloproteinase-2; Short=MMP-2; Contains: RecName: Full=PEX; Flags: Precursor) HSP 1 Score: 53.9138 bits (128), Expect = 2.651e-8 Identity = 27/62 (43.55%), Postives = 32/62 (51.61%), Query Frame = 0 Query: 38 SHGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT D PC FPFRF+G +Y SC T G TDG WC T D + GF Sbjct: 270 KYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYSSCTTEGRTDGYRWCGTTEDYDRDKKYGF 331
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|729178|sp|P41246.1|MMP9_RABIT (RecName: Full=Matrix metalloproteinase-9; Short=MMP-9; AltName: Full=92 kDa gelatinase; AltName: Full=92 kDa type IV collagenase; AltName: Full=Gelatinase B; Short=GELB; Flags: Precursor) HSP 1 Score: 53.1434 bits (126), Expect = 4.167e-8 Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 0 Query: 37 LSHGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 L G+ T D PC FPF F+GR+Y +C T G +DG AWCST D + GF Sbjct: 212 LGKGVVVPTYFGNADGAPCHFPFTFEGRSYTACTTDGRSDGMAWCSTTADYDTDRRFGF 270 HSP 2 Score: 49.6766 bits (117), Expect = 8.143e-7 Identity = 24/60 (40.00%), Postives = 31/60 (51.67%), Query Frame = 0 Query: 40 GLCQFTSCFTNDD----IPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 G C +T D PC FPF F+GRTY +C T G +DG WC+T + + GF Sbjct: 269 GFCPSERLYTQDGNADGKPCEFPFIFQGRTYSACTTDGRSDGHRWCATTASYDKDKLYGF 328
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|14917012|sp|O18733.2|MMP9_CANFA (RecName: Full=Matrix metalloproteinase-9; Short=MMP-9; AltName: Full=92 kDa gelatinase; AltName: Full=92 kDa type IV collagenase; AltName: Full=Gelatinase B; Short=GELB; Flags: Precursor) HSP 1 Score: 50.447 bits (119), Expect = 3.439e-7 Identity = 22/46 (47.83%), Postives = 28/46 (60.87%), Query Frame = 0 Query: 50 NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 D PC FPF F+GR+Y +C T G +DG WCST D + + GF Sbjct: 283 GDGKPCVFPFTFEGRSYSTCTTDGRSDGYRWCSTTADYDQDKLYGF 328
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325299997|ref|XP_023331777.1| (uncharacterized protein LOC111703920 isoform X3 [Eurytemora affinis]) HSP 1 Score: 76.2554 bits (186), Expect = 1.376e-13 Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 0 Query: 41 LCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHS--QCQPDCSVNNCPVGYMRL 115 +CQ++ C T D C FPFRFKGR YD+C+TL S WCS + L H+ +S QC+P C V NCPVGY Sbjct: 1451 VCQYSECVTVDSQVCQFPFRFKGRLYDTCVTLESE--TPWCSLERGLDLKHIDTGNSRGQCKPSCLVQNCPVGYFEF 1525
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325299988|ref|XP_023331775.1| (uncharacterized protein LOC111703920 isoform X1 [Eurytemora affinis]) HSP 1 Score: 75.8702 bits (185), Expect = 1.431e-13 Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 0 Query: 41 LCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHS--QCQPDCSVNNCPVGYMRL 115 +CQ++ C T D C FPFRFKGR YD+C+TL S WCS + L H+ +S QC+P C V NCPVGY Sbjct: 1496 VCQYSECVTVDSQVCQFPFRFKGRLYDTCVTLESE--TPWCSLERGLDLKHIDTGNSRGQCKPSCLVQNCPVGYFEF 1570
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325300001|ref|XP_023331778.1| (uncharacterized protein LOC111703920 isoform X4 [Eurytemora affinis]) HSP 1 Score: 75.8702 bits (185), Expect = 1.515e-13 Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 0 Query: 41 LCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHS--QCQPDCSVNNCPVGYMRL 115 +CQ++ C T D C FPFRFKGR YD+C+TL S WCS + L H+ +S QC+P C V NCPVGY Sbjct: 1327 VCQYSECVTVDSQVCQFPFRFKGRLYDTCVTLESE--TPWCSLERGLDLKHIDTGNSRGQCKPSCLVQNCPVGYFEF 1401
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325330640|ref|XP_023347184.1| (uncharacterized protein LOC111716007 isoform X1 [Eurytemora affinis]) HSP 1 Score: 75.8702 bits (185), Expect = 1.669e-13 Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 0 Query: 23 KVRPRDCYHNQSNVLSHGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHS--QCQPDCSVNNCPVGYMRL 115 K+ CY + +CQ+ C T + C FPFR+KGRTYD+CI S G+ WCS + D + NH+ G + C+ C+V +CP G+ R+ Sbjct: 1464 KLNNDSCYEEREIRPMRAVCQYKECTTLEKKICIFPFRYKGRTYDTCIY--SDQGKPWCSLQVDVNRNHIIGVDTVGTCEESCAVQSCPTGFFRI 1556
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325330642|ref|XP_023347185.1| (uncharacterized protein LOC111716007 isoform X2 [Eurytemora affinis]) HSP 1 Score: 75.8702 bits (185), Expect = 1.702e-13 Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 0 Query: 23 KVRPRDCYHNQSNVLSHGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHS--QCQPDCSVNNCPVGYMRL 115 K+ CY + +CQ+ C T + C FPFR+KGRTYD+CI S G+ WCS + D + NH+ G + C+ C+V +CP G+ R+ Sbjct: 1460 KLNNDSCYEEREIRPMRAVCQYKECTTLEKKICIFPFRYKGRTYDTCIY--SDQGKPWCSLQVDVNRNHIIGVDTVGTCEESCAVQSCPTGFFRI 1552
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325321954|ref|XP_023342796.1| (uncharacterized protein LOC111712429 [Eurytemora affinis]) HSP 1 Score: 75.485 bits (184), Expect = 2.125e-13 Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 0 Query: 41 LCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHS--QCQPDCSVNNCPVGYM 113 LCQFT C T ++ C FPFR+KGR +D+CIT+ S WCS D+ NH++ S QCQ C++ NCPVG+ Sbjct: 1017 LCQFTECLTVNNKVCKFPFRYKGRLHDTCITIDS--NVPWCSLSKDSKGNHIETETSRGQCQSSCAIQNCPVGFF 1089
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|395839432|ref|XP_003792593.1| (72 kDa type IV collagenase [Otolemur garnettii]) HSP 1 Score: 60.8474 bits (146), Expect = 2.473e-8 Identity = 28/61 (45.90%), Postives = 34/61 (55.74%), Query Frame = 0 Query: 39 HGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT D PC FPFRF+G++YDSC T G TDG WC T D + GF Sbjct: 271 YGFCPHEALFTMGGNADGQPCKFPFRFQGKSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGF 331
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|444725602|gb|ELW66163.1| (72 kDa type IV collagenase [Tupaia chinensis]) HSP 1 Score: 60.077 bits (144), Expect = 5.725e-8 Identity = 28/61 (45.90%), Postives = 33/61 (54.10%), Query Frame = 0 Query: 39 HGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT D PC FPFRF+G +YDSC T G TDG WC T D + GF Sbjct: 243 YGFCPHEALFTMGGNADGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGF 303
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1244125553|ref|XP_022374370.1| (72 kDa type IV collagenase [Enhydra lutris kenyoni]) HSP 1 Score: 59.6918 bits (143), Expect = 6.979e-8 Identity = 28/61 (45.90%), Postives = 33/61 (54.10%), Query Frame = 0 Query: 39 HGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT D PC FPFRF+G +YDSC T G TDG WC T D + GF Sbjct: 272 YGFCPHEALFTMGGNADGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGF 332
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1212164429|ref|XP_021560306.1| (72 kDa type IV collagenase [Neomonachus schauinslandi]) HSP 1 Score: 59.6918 bits (143), Expect = 6.979e-8 Identity = 28/61 (45.90%), Postives = 33/61 (54.10%), Query Frame = 0 Query: 39 HGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT D PC FPFRF+G +YDSC T G TDG WC T D + GF Sbjct: 272 YGFCPHEALFTMGGNADGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGF 332 The following BLAST results are available for this feature:
BLAST of 72 kda type iv collagenase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of 72 kda type iv collagenase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 8
BLAST of 72 kda type iv collagenase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold876_size86062:20715..22115- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold876_size86062-snap-gene-0.26 ID=maker-scaffold876_size86062-snap-gene-0.26|Name=72 kda type iv collagenase|organism=Tigriopus kingsejongensis|type=gene|length=1401bp|location=Sequence derived from alignment at scaffold876_size86062:20715..22115- (Tigriopus kingsejongensis)back to top Synonyms
The feature '72 kda type iv collagenase' has the following synonyms
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