72 kda type iv collagenase, maker-scaffold876_size86062-snap-gene-0.26 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 72 kda type iv collagenase vs. L. salmonis genes
Match: EMLSAG00000007729 (supercontig:LSalAtl2s:LSalAtl2s44:635264:638187:-1 gene:EMLSAG00000007729 transcript:EMLSAT00000007729 description:"maker-LSalAtl2s44-augustus-gene-6.6") HSP 1 Score: 49.2914 bits (116), Expect = 3.150e-8 Identity = 24/64 (37.50%), Postives = 39/64 (60.94%), Query Frame = 0 Query: 47 CFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHSQCQPDCSVNNCPV 110 C T + C+FPF++ G+TYD+C T ++ G WC+T +A + QG+ C +C V++CP Sbjct: 176 CATISGVSCTFPFKYNGKTYDACTTADNS-GSPWCATSVNAQGEY-QGY-GNCNTNCQVSSCPT 236
BLAST of 72 kda type iv collagenase vs. L. salmonis genes
Match: EMLSAG00000011493 (supercontig:LSalAtl2s:LSalAtl2s795:239914:241586:-1 gene:EMLSAG00000011493 transcript:EMLSAT00000011493 description:"maker-LSalAtl2s795-augustus-gene-1.13") HSP 1 Score: 45.4394 bits (106), Expect = 5.794e-7 Identity = 21/65 (32.31%), Postives = 33/65 (50.77%), Query Frame = 0 Query: 41 LCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHV--QGFHSQCQPDC 103 LC + +++ C FPF G+T+ SC T+ +G+ WCST+ H+ GF C +C Sbjct: 25 LCNVVENASKNNMSCQFPFILNGKTHYSCTTIQDDEGKHWCSTRVTDREIHIGSMGFWGHCSDEC 89
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|116856|sp|P08253.2|MMP2_HUMAN (RecName: Full=72 kDa type IV collagenase; AltName: Full=72 kDa gelatinase; AltName: Full=Gelatinase A; AltName: Full=Matrix metalloproteinase-2; Short=MMP-2; AltName: Full=TBE-1; Contains: RecName: Full=PEX; Flags: Precursor) HSP 1 Score: 58.151 bits (139), Expect = 8.917e-10 Identity = 27/61 (44.26%), Postives = 33/61 (54.10%), Query Frame = 0 Query: 39 HGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT + PC FPFRF+G +YDSC T G TDG WC T D + GF Sbjct: 271 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGF 331
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|75049982|sp|Q9GLE5.1|MMP2_BOVIN (RecName: Full=72 kDa type IV collagenase; AltName: Full=72 kDa gelatinase; AltName: Full=Matrix metalloproteinase-2; Short=MMP-2; Contains: RecName: Full=PEX; Flags: Precursor) HSP 1 Score: 56.225 bits (134), Expect = 3.601e-9 Identity = 28/62 (45.16%), Postives = 33/62 (53.23%), Query Frame = 0 Query: 38 SHGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT D PC FPFRF+G +YDSC T G TDG WC T D + GF Sbjct: 271 KYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKEYGF 332
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|2499908|sp|Q90611.1|MMP2_CHICK (RecName: Full=72 kDa type IV collagenase; AltName: Full=72 kDa gelatinase; AltName: Full=Gelatinase A; AltName: Full=Matrix metalloproteinase-2; Short=MMP-2; Flags: Precursor) HSP 1 Score: 55.4546 bits (132), Expect = 7.597e-9 Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0 Query: 38 SHGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C S FT D PC FPF+F+G++YD C T G TDG WC T D + GF Sbjct: 267 KYGFCPHESLFTMGGNGDGQPCKFPFKFQGQSYDQCTTEGRTDGYRWCGTTEDYDRDKKYGF 328
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|146345459|sp|P33436.2|MMP2_RAT (RecName: Full=72 kDa type IV collagenase; AltName: Full=72 kDa gelatinase; AltName: Full=Gelatinase A; AltName: Full=Matrix metalloproteinase-2; Short=MMP-2; Contains: RecName: Full=PEX; Flags: Precursor) HSP 1 Score: 54.6842 bits (130), Expect = 1.175e-8 Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0 Query: 38 SHGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT D PC FPFRF+G +Y+SC T G TDG WC T D + GF Sbjct: 270 KYGFCPHEALFTMGGNGDGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGF 331
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|461766|sp|P33434.1|MMP2_MOUSE (RecName: Full=72 kDa type IV collagenase; AltName: Full=72 kDa gelatinase; AltName: Full=Gelatinase A; AltName: Full=Matrix metalloproteinase-2; Short=MMP-2; Contains: RecName: Full=PEX; Flags: Precursor) HSP 1 Score: 54.299 bits (129), Expect = 1.571e-8 Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0 Query: 38 SHGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT D PC FPFRF+G +Y+SC T G TDG WC T D + GF Sbjct: 270 KYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGF 331
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|1705979|sp|P50757.1|MMP2_RABIT (RecName: Full=72 kDa type IV collagenase; AltName: Full=72 kDa gelatinase; AltName: Full=Gelatinase A; AltName: Full=Matrix metalloproteinase-2; Short=MMP-2; Contains: RecName: Full=PEX; Flags: Precursor) HSP 1 Score: 53.9138 bits (128), Expect = 2.651e-8 Identity = 27/62 (43.55%), Postives = 32/62 (51.61%), Query Frame = 0 Query: 38 SHGLCQFTSCFT----NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 +G C + FT D PC FPFRF+G +Y SC T G TDG WC T D + GF Sbjct: 270 KYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYSSCTTEGRTDGYRWCGTTEDYDRDKKYGF 331
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|729178|sp|P41246.1|MMP9_RABIT (RecName: Full=Matrix metalloproteinase-9; Short=MMP-9; AltName: Full=92 kDa gelatinase; AltName: Full=92 kDa type IV collagenase; AltName: Full=Gelatinase B; Short=GELB; Flags: Precursor) HSP 1 Score: 53.1434 bits (126), Expect = 4.167e-8 Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 0 Query: 37 LSHGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 L G+ T D PC FPF F+GR+Y +C T G +DG AWCST D + GF Sbjct: 212 LGKGVVVPTYFGNADGAPCHFPFTFEGRSYTACTTDGRSDGMAWCSTTADYDTDRRFGF 270 HSP 2 Score: 49.6766 bits (117), Expect = 8.143e-7 Identity = 24/60 (40.00%), Postives = 31/60 (51.67%), Query Frame = 0 Query: 40 GLCQFTSCFTNDD----IPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 G C +T D PC FPF F+GRTY +C T G +DG WC+T + + GF Sbjct: 269 GFCPSERLYTQDGNADGKPCEFPFIFQGRTYSACTTDGRSDGHRWCATTASYDKDKLYGF 328
BLAST of 72 kda type iv collagenase vs. SwissProt
Match: gi|14917012|sp|O18733.2|MMP9_CANFA (RecName: Full=Matrix metalloproteinase-9; Short=MMP-9; AltName: Full=92 kDa gelatinase; AltName: Full=92 kDa type IV collagenase; AltName: Full=Gelatinase B; Short=GELB; Flags: Precursor) HSP 1 Score: 50.447 bits (119), Expect = 3.439e-7 Identity = 22/46 (47.83%), Postives = 28/46 (60.87%), Query Frame = 0 Query: 50 NDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGF 95 D PC FPF F+GR+Y +C T G +DG WCST D + + GF Sbjct: 283 GDGKPCVFPFTFEGRSYSTCTTDGRSDGYRWCSTTADYDQDKLYGF 328
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325286926|ref|XP_023328200.1| (uncharacterized protein LOC111701241 [Eurytemora affinis] >gi|1325286928|ref|XP_023328201.1| uncharacterized protein LOC111701241 [Eurytemora affinis]) HSP 1 Score: 91.2781 bits (225), Expect = 5.754e-19 Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 0 Query: 28 DCYHNQSNVLSHGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHSQ--CQPDCSVNNCPVGYMR 114 +C +N+ V GLCQ+ C T + PCSFPF++KGR YDSCIT+ ST + WCS KTD H NH++ +++ C C+V NCPVGY + Sbjct: 1332 NCSNNE--VQLRGLCQYKECITTEHKPCSFPFKYKGRMYDSCITIDST--EPWCSLKTDIHRNHIEDTNNRGTCSSSCNVQNCPVGYFK 1416
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325288280|ref|XP_023328901.1| (uncharacterized protein LOC111701725 [Eurytemora affinis]) HSP 1 Score: 88.5817 bits (218), Expect = 6.600e-18 Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 0 Query: 39 HGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHSQ--CQPDCSVNNCPVGYMR 114 G+CQ+ C T IPCSFPF++KGR YDSCIT+ ST + WCS KTD NH++ +++ C C++ NCPVG+ + Sbjct: 1063 RGVCQYKECITTQSIPCSFPFKYKGRMYDSCITIDST--EPWCSLKTDIVRNHIENVNTKGTCSSSCNIQNCPVGFFK 1138
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325327853|ref|XP_023345779.1| (uncharacterized protein LOC111714808 isoform X1 [Eurytemora affinis]) HSP 1 Score: 81.6481 bits (200), Expect = 1.451e-15 Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 0 Query: 32 NQSNVLSHGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQ--GFHSQCQPDCSVNNCPVGYMRLPETQTCY 122 N S G+CQ+ C TN+ CSFPF++KGR YDSCIT+ S + WCS K D + NH++ G C C V +CPVG+ +L +TCY Sbjct: 1424 NDSETSLRGVCQYRECTTNESQICSFPFKYKGRMYDSCITIDSY--EPWCSLKIDLNRNHIESDGARGYCSSVCFVRDCPVGFYKL--EKTCY 1512
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325327855|ref|XP_023345780.1| (uncharacterized protein LOC111714808 isoform X2 [Eurytemora affinis]) HSP 1 Score: 81.6481 bits (200), Expect = 1.494e-15 Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 0 Query: 32 NQSNVLSHGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQ--GFHSQCQPDCSVNNCPVGYMRLPETQTCY 122 N S G+CQ+ C TN+ CSFPF++KGR YDSCIT+ S + WCS K D + NH++ G C C V +CPVG+ +L +TCY Sbjct: 1423 NDSETSLRGVCQYRECTTNESQICSFPFKYKGRMYDSCITIDSY--EPWCSLKIDLNRNHIESDGARGYCSSVCFVRDCPVGFYKL--EKTCY 1511
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325324098|ref|XP_023343891.1| (uncharacterized protein LOC111713287 [Eurytemora affinis]) HSP 1 Score: 80.1073 bits (196), Expect = 5.763e-15 Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 0 Query: 39 HGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHSQ--CQPDCSVNNCPVGYM 113 LCQFT C TN++ C FPFR+KGR +D+CIT+ S WCS TD NH+ ++ CQP C V NCPVGY Sbjct: 295 RALCQFTECLTNNNKVCRFPFRYKGRLHDTCITIDS--DVPWCSLATDYKGNHIDNEENRGTCQPSCFVQNCPVGYF 369
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325297757|ref|XP_023331271.1| (uncharacterized protein LOC111703540 isoform X3 [Eurytemora affinis]) HSP 1 Score: 79.337 bits (194), Expect = 9.920e-15 Identity = 45/111 (40.54%), Postives = 57/111 (51.35%), Query Frame = 0 Query: 10 TCGQLIIKDGDDGKVRPRDCYHNQSNVLSHGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHSQ--CQPDCSVNNCPVGYMRLPET 118 TC I D VRPR + + +CQFT C T D+ C FPF++KGR YD+CIT+ S WCS D NH+ +Q CQ C V NCPVG+ +T Sbjct: 1513 TCIDFTIVRYDANAVRPR-----RWDPDIRTICQFTECLTTDNRICKFPFKYKGRLYDTCITIDS--AFPWCSLSVDEKRNHIDHVSNQGRCQESCFVQNCPVGFFSHEDT 1616
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325297739|ref|XP_023331267.1| (uncharacterized protein LOC111703540 isoform X1 [Eurytemora affinis] >gi|1325297744|ref|XP_023331268.1| uncharacterized protein LOC111703540 isoform X1 [Eurytemora affinis] >gi|1325297748|ref|XP_023331269.1| uncharacterized protein LOC111703540 isoform X1 [Eurytemora affinis] >gi|1325297753|ref|XP_023331270.1| uncharacterized protein LOC111703540 isoform X2 [Eurytemora affinis]) HSP 1 Score: 79.337 bits (194), Expect = 1.083e-14 Identity = 45/111 (40.54%), Postives = 57/111 (51.35%), Query Frame = 0 Query: 10 TCGQLIIKDGDDGKVRPRDCYHNQSNVLSHGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHSQ--CQPDCSVNNCPVGYMRLPET 118 TC I D VRPR + + +CQFT C T D+ C FPF++KGR YD+CIT+ S WCS D NH+ +Q CQ C V NCPVG+ +T Sbjct: 1513 TCIDFTIVRYDANAVRPR-----RWDPDIRTICQFTECLTTDNRICKFPFKYKGRLYDTCITIDS--AFPWCSLSVDEKRNHIDHVSNQGRCQESCFVQNCPVGFFSHEDT 1616
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325319828|ref|XP_023341706.1| (uncharacterized protein LOC111711554 [Eurytemora affinis]) HSP 1 Score: 77.7962 bits (190), Expect = 3.329e-14 Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 0 Query: 29 CYHNQSNVLSHGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHS--QCQPDCSVNNCPVGYMRLPE 117 CY N+ +CQ+ C T + C FPF++KGRTYD+CI + G+ WCS + D++ NHV G ++ C C+V CP G+ R+ E Sbjct: 1208 CYEGDQNIPMRAVCQYKECNTLESKTCVFPFQYKGRTYDTCIR--TDKGKPWCSLQVDSNRNHVNGVNTVGTCDQSCAVQTCPSGFFRIDE 1296
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325297510|ref|XP_023331209.1| (uncharacterized protein LOC111703493 [Eurytemora affinis]) HSP 1 Score: 76.6406 bits (187), Expect = 9.450e-14 Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 0 Query: 39 HGLCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLN-HVQGFHSQCQPDCSVNNCPVGYMRLPETQTC 121 H LC++ C T + C FPFR+ GR Y++CI G + AWC+T D++LN QG C C +NNCPVG+ P TC Sbjct: 1919 HALCEYRGCETTSAVKCKFPFRYAGRLYNTCIKFGIPESPAWCATSVDSNLNIKTQG---NCSSSCEINNCPVGFH--PHLATC 1997
BLAST of 72 kda type iv collagenase vs. nr
Match: gi|1325299992|ref|XP_023331776.1| (uncharacterized protein LOC111703920 isoform X2 [Eurytemora affinis]) HSP 1 Score: 76.2554 bits (186), Expect = 1.363e-13 Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 0 Query: 41 LCQFTSCFTNDDIPCSFPFRFKGRTYDSCITLGSTDGQAWCSTKTDAHLNHVQGFHS--QCQPDCSVNNCPVGYMRL 115 +CQ++ C T D C FPFRFKGR YD+C+TL S WCS + L H+ +S QC+P C V NCPVGY Sbjct: 1496 VCQYSECVTVDSQVCQFPFRFKGRLYDTCVTLESE--TPWCSLERGLDLKHIDTGNSRGQCKPSCLVQNCPVGYFEF 1570 The following BLAST results are available for this feature:
BLAST of 72 kda type iv collagenase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of 72 kda type iv collagenase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 8
BLAST of 72 kda type iv collagenase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold876_size86062:20715..22115- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold876_size86062-snap-gene-0.26 ID=maker-scaffold876_size86062-snap-gene-0.26|Name=72 kda type iv collagenase|organism=Tigriopus kingsejongensis|type=gene|length=1401bp|location=Sequence derived from alignment at scaffold876_size86062:20715..22115- (Tigriopus kingsejongensis)back to top Synonyms
The feature '72 kda type iv collagenase' has the following synonyms
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