39s ribosomal protein mitochondrial precursor, snap_masked-scaffold521_size146803-processed-gene-0.1 (gene) Tigriopus kingsejongensis

Overview
Name39s ribosomal protein mitochondrial precursor
Unique Namesnap_masked-scaffold521_size146803-processed-gene-0.1
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of 39s ribosomal protein mitochondrial precursor vs. L. salmonis genes
Match: EMLSAG00000010249 (supercontig:LSalAtl2s:LSalAtl2s67:717344:718924:-1 gene:EMLSAG00000010249 transcript:EMLSAT00000010249 description:"maker-LSalAtl2s67-augustus-gene-7.20")

HSP 1 Score: 165.622 bits (418), Expect = 6.322e-50
Identity = 82/169 (48.52%), Postives = 114/169 (67.46%), Query Frame = 0 
Query:   31 ERESEKVANKVHFKRIVLFNKRHHPHQKRDIFPPFEARRKAMDHAKRYSYGARGTGVRHHANWEHVPEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSDFKAGQLNDQGEPLQPSQEEKMTAEDARVQARQTGSDIFLGGTPRSKKWNIRWE 199
            +R SE    K+   R+ L NKRH P  K  +F  FE +   ++H    +YG R TG+RH   WE++PE  P+L+VPDLTD +LKPYVSYR K + QEE T KDLFNAVYG KI++DFK+ +LN+ G  L+PS  EKMT  +A V A++TGSDI+ GG  +  ++ ++++
Sbjct:  240 QRLSEFDYKKIFLGRLKLGNKRHLPVHKSKLFKKFEGK-PELNHPT-TNYGCRSTGIRHEIGWEYIPEMRPELVVPDLTDFKLKPYVSYRAKNVVQEELTPKDLFNAVYGSKIVNDFKSDKLNEDGSSLEPSSYEKMTIHEAYVAAKKTGSDIYQGGEAQDPRFKLKYK 406
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BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|121988765|sp|Q291A0.1|RM41_DROPS (RecName: Full=39S ribosomal protein L41, mitochondrial; Short=L41mt; Short=MRP-L41; Flags: Precursor)

HSP 1 Score: 137.887 bits (346), Expect = 2.560e-40
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 0 
Query:   81 GARGTGVRHHANWEHVPEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSDFKAGQLNDQGEPLQPSQEEKMTAEDARVQARQTGSDIF 184
            G R TG+     +  +PEK+P +IVPDLTDC+LKPYVSY+  E+ Q EFT+ DLFNAVY KKI+ DFKAG L   G P +PS EEK+T+ +A ++AR+TGSDIF
Sbjct:   63 GVRDTGILVDGKFVEIPEKIPDIIVPDLTDCKLKPYVSYKAPEVVQSEFTSLDLFNAVYSKKIVEDFKAGSLQADGSPKEPSAEEKLTSSEAFLRARRTGSDIF 166
[Close]
BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|122063590|sp|Q7JZM8.1|RM41_DROME (RecName: Full=39S ribosomal protein L41, mitochondrial; Short=L41mt; Short=MRP-L41; Flags: Precursor)

HSP 1 Score: 125.561 bits (314), Expect = 1.438e-35
Identity = 56/104 (53.85%), Postives = 75/104 (72.12%), Query Frame = 0 
Query:   81 GARGTGVRHHANWEHVPEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSDFKAGQLNDQGEPLQPSQEEKMTAEDARVQARQTGSDIF 184
            G R TG+     +  +PEK+P +IVPDLT C+LKPYVSY+  ++ Q EFT+ DLFNAVY +KI+ DFKAG+L   G   +PS  E++T E+A  +AR+TGSDIF
Sbjct:   63 GVRDTGILVDGQYVEIPEKIPDIIVPDLTGCKLKPYVSYKAPDVVQSEFTSLDLFNAVYSQKIIEDFKAGKLQKDGSAKEPSVNEQLTPEEALQRARKTGSDIF 166
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BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|81882547|sp|Q5BJX1.1|RM41_RAT (RecName: Full=39S ribosomal protein L41, mitochondrial; Short=L41mt; Short=MRP-L41; Flags: Precursor)

HSP 1 Score: 60.4622 bits (145), Expect = 8.932e-11
Identity = 35/92 (38.04%), Postives = 47/92 (51.09%), Query Frame = 0 
Query:   79 SYGARGTGVRHHANWEHVPEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSDFKAGQL---NDQGEPLQPSQEEKM 167
            S GA+ TG   +  +  + E VP+ +VPDLT  +LKPYV+YR         TAK LF       I  DFK G     N +    +P+QE K+
Sbjct:   33 SRGAKKTGFYTNRKFVQIKEMVPEFVVPDLTGFKLKPYVNYRAPAGIDTPLTAKALFLETVAPAIEKDFKEGTFDANNLEKYGFEPTQEGKL 124
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BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|81880390|sp|Q9CQN7.1|RM41_MOUSE (RecName: Full=39S ribosomal protein L41, mitochondrial; Short=L41mt; Short=MRP-L41; Flags: Precursor)

HSP 1 Score: 58.151 bits (139), Expect = 6.913e-10
Identity = 35/93 (37.63%), Postives = 47/93 (50.54%), Query Frame = 0 
Query:   79 SYGARGTGV-RHHANWEHVPEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSDFKAGQL---NDQGEPLQPSQEEKM 167
            S GA+ TG+      +  + E VP+ +VPDLT  +LKPYV+YR         TAK LF       I  DFK G     N +    +P+QE K+
Sbjct:   33 SRGAKKTGIYTSDRKFVQIKEMVPEFVVPDLTGFKLKPYVNYRAPAGIDTPLTAKALFQETVAPAIEKDFKEGTFDANNLEKYGFEPTQEGKL 125
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BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|74750734|sp|Q8IXM3.1|RM41_HUMAN (RecName: Full=39S ribosomal protein L41, mitochondrial; Short=L41mt; Short=MRP-L41; AltName: Full=39S ribosomal protein L27 homolog; AltName: Full=Bcl-2-interacting mitochondrial ribosomal protein L41; AltName: Full=Cell proliferation-inducing gene 3 protein; AltName: Full=MRP-L27 homolog; AltName: Full=Mitochondrial large ribosomal subunit protein mL41; Flags: Precursor)

HSP 1 Score: 57.3806 bits (137), Expect = 1.022e-9
Identity = 37/96 (38.54%), Postives = 48/96 (50.00%), Query Frame = 0 
Query:   77 RYSYGARGTGVRHHANWEHV--PEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSDFKAGQL---NDQGEPLQPSQEEKM 167
            R   GA+G G    + W  V   E VP+ +VPDLT  +LKPYVSY   E  +   TA  LF+      I  DFK G     N +    +P+QE K+
Sbjct:   33 RKGRGAKGIGF-LTSGWRFVQIKEMVPEFVVPDLTGFKLKPYVSYLAPESEETPLTAAQLFSEAVAPAIEKDFKDGTFDPDNLEKYGFEPTQEGKL 127
[Close]
BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|82183610|sp|Q6DJI4.1|RM41A_XENLA (RecName: Full=39S ribosomal protein L41-A, mitochondrial; Short=L41mt-A; Short=MRP-L41-A; Flags: Precursor)

HSP 1 Score: 51.2174 bits (121), Expect = 2.235e-7
Identity = 34/93 (36.56%), Postives = 47/93 (50.54%), Query Frame = 0 
Query:   81 GARGTG-VRHHANWEHVPEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSDFKAG-----QLNDQGEPLQPSQEEKM 167
            GA+  G +     +  V E VP  +VPDLT  +LKPYVSY+     ++  TAK LF    G +I  D + G      L   G   +P+QE K+
Sbjct:   35 GAKKIGYLTASGKFVKVREMVPVFVVPDLTGFKLKPYVSYKAPPGTEDPMTAKKLFMETVGPQIEKDLQEGTFRPEDLEKYG--FEPTQEGKL 125
[Close]
BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|82184781|sp|Q6INF3.1|RM41B_XENLA (RecName: Full=39S ribosomal protein L41-B, mitochondrial; Short=L41mt-B; Short=MRP-L41-B; Flags: Precursor)

HSP 1 Score: 50.8322 bits (120), Expect = 3.318e-7
Identity = 34/93 (36.56%), Postives = 47/93 (50.54%), Query Frame = 0 
Query:   81 GARGTG-VRHHANWEHVPEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSD-----FKAGQLNDQGEPLQPSQEEKM 167
            GA+  G +     +  V E VP  +VPDLT  +LKPYVSY+     ++  TAK LF    G +I  D     F+   L   G   +P+QE K+
Sbjct:   35 GAKKIGYLTSSGKFVKVREMVPVFVVPDLTGFKLKPYVSYKAPPGTEDPMTAKKLFMETVGPQIEKDLQESTFRPEDLEKYG--FEPTQEGKL 125
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BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|568249921|gb|ETN59694.1| (39S ribosomal protein L41, mitochondrial [Anopheles darlingi])

HSP 1 Score: 134.806 bits (338), Expect = 8.469e-37
Identity = 68/159 (42.77%), Postives = 104/159 (65.41%), Query Frame = 0 
Query:   34 SEKVANKVHFKRIVLFNKRHHP--HQKR----DIFP--PFEARRKAMDHAKRYSYGARGTGVRHHANWEHVPEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSDFKAGQLNDQGEPLQPSQEEKMTAEDARVQARQTGSDIF 184
            +  +A K +F++ +L+NKR      Q+R    D++P  P + R            G R TGV     +  +PE++P+LIVP+L  C+LKPYVSY+  ++ Q EFT++DLFNAVY +KI+ D+K+G+LN+ G P +PS EE +T E+A ++AR+TGSD+F
Sbjct:   12 TASLAGKRNFRKFLLYNKRGTRVFKQQRAANPDLYPDMPIDKR------------GVRDTGVTVDGKFVEIPERIPELIVPNLEGCKLKPYVSYKAPDVVQSEFTSQDLFNAVYSQKIIDDWKSGKLNEDGSPAEPSTEEALTKEEAWIKARKTGSDMF 158
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BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1339083503|ref|XP_023702800.1| (39S ribosomal protein L41, mitochondrial isoform X1 [Cryptotermes secundus])

HSP 1 Score: 134.806 bits (338), Expect = 8.767e-37
Identity = 71/153 (46.41%), Postives = 97/153 (63.40%), Query Frame = 0 
Query:   34 SEKVANKVHFKRIVLFNKRHHPHQKRDIFPPFEARRKAMDHAKR--YSYGARGTGVRHHANWEHVPEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSDFKAGQLNDQGEPLQPSQEEKMTAEDARVQARQTGSDIF 184
            S     K +F++ +L+NKR            F+ R+   D      +  G R  G      +  VPE +P+LIVPDLT  +LKPYVSYRT ++ Q EFT KDLFNAVY +K+++DFK G+L + GEPL+PS EE++T E+A VQAR+TG+DIF
Sbjct:   17 SVVCCGKRNFRKFLLYNKRGTKL--------FKERQMTKDRDPELFHDLGVRPVGYHVGDTFVKVPEMIPELIVPDLTGFKLKPYVSYRTPDVVQSEFTPKDLFNAVYSEKVVNDFKNGKLTETGEPLEPSPEEQLTPEEAYVQARKTGTDIF 161
[Close]
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|347965380|ref|XP_003435754.1| (AGAP013376-PA [Anopheles gambiae str. PEST] >gi|333470538|gb|EGK97659.1| AGAP013376-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 134.806 bits (338), Expect = 9.440e-37
Identity = 67/159 (42.14%), Postives = 104/159 (65.41%), Query Frame = 0 
Query:   34 SEKVANKVHFKRIVLFNKRHHP--HQKR----DIFP--PFEARRKAMDHAKRYSYGARGTGVRHHANWEHVPEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSDFKAGQLNDQGEPLQPSQEEKMTAEDARVQARQTGSDIF 184
            +  ++ K +F++ +L+NKR      Q+R    D++P  P + R            G R TGV    N+  + EK+P+LIVP++  C+ KPYVSY+  ++ Q EFT++DLFN+VY +KI+ D+K+G+LND G P++PS EE  +AE+A ++AR+TGSDIF
Sbjct:   12 TASLSGKKNFRKFLLYNKRGTRIFKQQRAANPDLYPDMPIDKR------------GVRDTGVTIDGNFVEIAEKIPELIVPNMEGCKFKPYVSYKAPDVVQSEFTSQDLFNSVYAQKIIDDWKSGKLNDDGSPMEPSAEEMQSAEEAWIKARKTGSDIF 158
[Close]
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1316146928|ref|XP_023218549.1| (39S ribosomal protein L41, mitochondrial-like [Centruroides sculpturatus])

HSP 1 Score: 134.806 bits (338), Expect = 1.402e-36
Identity = 74/152 (48.68%), Postives = 99/152 (65.13%), Query Frame = 0 
Query:   34 SEKVANKVHFKRIVLFNKRHHPHQKRDIFPPFEARRKAMDH-AKRYSYGARGTGVRHHANWEHVPEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSDFKAGQLNDQGEPLQPSQEEKMTAEDARVQARQTGSDIF 184
            ++ V  K +FK     NKR  P Q R+       +   +DH   R SY     G +    +   PE  P+LIVPDLTDC+LKPYVSY+  E+ Q EFTAKDLF+AVY KKI+ DFK+G+L+  G PL+PS+EE +T E+AR++AR++GSDIF
Sbjct:   17 TQLVNGKRNFKNFYFPNKRG-PKQYRENL----RKNNLVDHRGLRVSYLHFPNGEKLEKKY--FPELFPELIVPDLTDCKLKPYVSYQAPEVTQSEFTAKDLFDAVYSKKIMDDFKSGKLDSDGNPLEPSEEESLTPEEARIRARKSGSDIF 161
[Close]
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1321318347|ref|XP_023301501.1| (39S ribosomal protein L41, mitochondrial [Lucilia cuprina] >gi|906473672|gb|KNC33435.1| hypothetical protein FF38_09898 [Lucilia cuprina])

HSP 1 Score: 134.035 bits (336), Expect = 2.667e-36
Identity = 69/149 (46.31%), Postives = 100/149 (67.11%), Query Frame = 0 
Query:   40 KVHFKRIVLFNKRHHPHQKRDIFPPFEARRKAMDHA----KRYSYGARGTGVRHHANWEHVPEKVPQLIVPDLTDCELKPYVSYRTKEIYQEEFTAKDLFNAVYGKKILSDFKAGQLNDQGEPLQPSQEEKMTAEDARVQARQTGSDIF 184
            K +F++ ++ NKR     K       EA+R  ++ A    KR   G R TG+  +  +  +PEK+P+LIVP+L DC+LKPYVSY+  ++ Q EFT+ DLFNAVY KK++ DFK G+L + G P++PS+ E +TAE+A  +AR+TGSDIF
Sbjct:   28 KRNFRKFLVHNKRGTRVVK-------EAQRTQLNPAVPIDKR---GVRDTGMIVNGKYVEIPEKIPELIVPNLDDCKLKPYVSYKAADVIQSEFTSLDLFNAVYSKKVIQDFKEGKLKEDGMPVEPSENELLTAEEALQRARKTGSDIF 166
The following BLAST results are available for this feature:
BLAST of 39s ribosomal protein mitochondrial precursor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000102496.322e-5048.52supercontig:LSalAtl2s:LSalAtl2s67:717344:718924:-1... [more]
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BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
gi|121988765|sp|Q291A0.1|RM41_DROPS2.560e-4058.65RecName: Full=39S ribosomal protein L41, mitochond... [more]
gi|122063590|sp|Q7JZM8.1|RM41_DROME1.438e-3553.85RecName: Full=39S ribosomal protein L41, mitochond... [more]
gi|81882547|sp|Q5BJX1.1|RM41_RAT8.932e-1138.04RecName: Full=39S ribosomal protein L41, mitochond... [more]
gi|81880390|sp|Q9CQN7.1|RM41_MOUSE6.913e-1037.63RecName: Full=39S ribosomal protein L41, mitochond... [more]
gi|74750734|sp|Q8IXM3.1|RM41_HUMAN1.022e-938.54RecName: Full=39S ribosomal protein L41, mitochond... [more]
gi|82183610|sp|Q6DJI4.1|RM41A_XENLA2.235e-736.56RecName: Full=39S ribosomal protein L41-A, mitocho... [more]
gi|82184781|sp|Q6INF3.1|RM41B_XENLA3.318e-736.56RecName: Full=39S ribosomal protein L41-B, mitocho... [more]
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BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|568249921|gb|ETN59694.1|8.469e-3742.7739S ribosomal protein L41, mitochondrial [Anophele... [more]
gi|1339083503|ref|XP_023702800.1|8.767e-3746.4139S ribosomal protein L41, mitochondrial isoform X... [more]
gi|347965380|ref|XP_003435754.1|9.440e-3742.14AGAP013376-PA [Anopheles gambiae str. PEST] >gi|33... [more]
gi|1316146928|ref|XP_023218549.1|1.402e-3648.6839S ribosomal protein L41, mitochondrial-like [Cen... [more]
gi|1321318347|ref|XP_023301501.1|2.667e-3646.3139S ribosomal protein L41, mitochondrial [Lucilia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold521_size146803supercontigscaffold521_size146803:54046..54648 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold521_size146803-processed-gene-0.1-mRNA-1snap_masked-scaffold521_size146803-processed-gene-0.1-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold521_size146803:54046..54648+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold521_size146803-processed-gene-0.1 ID=snap_masked-scaffold521_size146803-processed-gene-0.1|Name=39s ribosomal protein mitochondrial precursor|organism=Tigriopus kingsejongensis|type=gene|length=603bp|location=Sequence derived from alignment at scaffold521_size146803:54046..54648+ (Tigriopus kingsejongensis)
ATGCTCCAACTGAGATCCTTGCTTCTGGCCCGGGGACCAACCCTCGGGCA
GAGCTTCCACACGGCGCCTGGTCTGGCCCAATACTTCAAAGAGCGGGAGA
GCGAAAAGGTGGCCAACAAAGTGCACTTTAAGCGAATCGTACTTTTCAAC
AAGCGACACCATCCCCACCAGAAGCGGGACATCTTCCCCCCGTTTGAGGC
CCGGAGGAAGGCTATGGATCACGCTAAGCGCTACAGCTATGGGGCGCGTG
GGACCGGCGTCCGGCATCATGCCAATTGGGAACATGTGCCGGAGAAGGTC
CCTCAACTGATTGTGCCTGATCTGACCGATTGCGAATTGAAACCCTACGT
GTCGTATCGCACCAAGGAAATTTATCAAGAGGAGTTCACGGCCAAAGATC
TCTTCAACGCCGTCTACGGCAAGAAGATCCTAAGCGACTTCAAGGCGGGA
CAACTGAACGATCAGGGCGAGCCTCTTCAACCGAGTCAGGAAGAAAAGAT
GACGGCTGAAGATGCCCGAGTCCAGGCCAGACAGACAGGATCCGACATCT
TTTTGGGAGGCACGCCCAGGTCGAAAAAGTGGAACATTCGATGGGAGTAC
TAG
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Synonyms
The feature '39s ribosomal protein mitochondrial precursor' has the following synonyms
Synonym
Tk12188
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