Tk01116, Tk01116 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk01116
Unique NameTk01116
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length373
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003070Orphan nuclear receptorPRINTSPR01284NUCLEARECPTRcoord: 350..371
score: 47.93
coord: 250..265
score: 55.11
coord: 229..249
score: 51.52
coord: 103..118
score: 93.75
coord: 296..313
score: 61.62
coord: 179..193
score: 72.12
coord: 329..349
score: 56.71
IPR001723Nuclear hormone receptorPRINTSPR00398STRDHORMONERcoord: 271..286
score: 32.33
coord: 92..102
score: 54.26
coord: 205..221
score: 25.75
coord: 184..205
score: 20.32
coord: 329..346
score: 32.44
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 47..62
score: 64.08
coord: 31..47
score: 51.38
coord: 88..96
score: 65.24
coord: 80..88
score: 62.59
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 28..99
e-value: 7.6E-39
score: 145.0
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 30..98
e-value: 4.4E-31
score: 107.0
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 31..57
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 28..103
score: 19.89
IPR000536Nuclear hormone receptor, ligand-binding domainSMARTSM00430holicoord: 183..341
e-value: 1.6E-22
score: 90.8
IPR000536Nuclear hormone receptor, ligand-binding domainPFAMPF00104Hormone_recepcoord: 175..353
e-value: 3.2E-21
score: 75.7
IPR000536Nuclear hormone receptor, ligand-binding domainPROSITEPS51843NR_LBDcoord: 127..370
score: 44.338
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 22..121
e-value: 5.2E-33
score: 115.3
NoneNo IPR availableGENE3D1.10.565.10coord: 122..373
e-value: 1.5E-87
score: 295.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..128
NoneNo IPR availablePANTHERPTHR24085NUCLEAR HORMONE RECEPTORcoord: 20..373
NoneNo IPR availablePANTHERPTHR24085:SF4NUCLEAR HORMONE RECEPTOR HR38-RELATEDcoord: 20..373
NoneNo IPR availableCDDcd06969NR_DBD_NGFI-Bcoord: 30..103
e-value: 5.55754E-52
score: 165.311
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 29..107
IPR035500Nuclear hormone receptor-like domain superfamilySUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 102..370

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold743_size103610-snap-gene-0.17-mRNA-1maker-scaffold743_size103610-snap-gene-0.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk01116 ID=Tk01116|Name=Tk01116|organism=Tigriopus kingsejongensis|type=polypeptide|length=373bp
LSKMRLPLGPPPPPLTRSPASGDLKATSLLCAVCGDNAACQHYGVRTCEG
CKGFFKRTVQKNAKYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEV
VRTDSLKGRRGRLPSKPRSPQEQPPSPPVSLITALVRAHIDTSPDSSPNS
LDFSQYMEASVEELETKEGLVVNEATKIQQFYHLLTSSIEVIRKFCDRIP
GINDILASDRELLFQSACLELFALRLAYRIQPDSDQFTFCHGLVLHRNQC
QHSFGDWLGSIMEFSRTLHAMDLDIQAFACLCALTLVTDRHGLSDPKRVE
NLQSKVINSLKDHVTYNPDAQKKQQYFSRILERLTPLRSLSVQGLQRIFY
LKMEDTVPVPAVIEKMFASSIPF
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003070Nuc_orph_rcpt
IPR001723Nuclear_hrmn_rcpt
IPR001628Znf_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
IPR035500NHR_like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0004879nuclear receptor activity
GO:0003677DNA binding
GO:0003707steroid hormone receptor activity
GO:0008270zinc ion binding
GO:0003700DNA-binding transcription factor activity
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Add to Basket