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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 614..662 |
None | No IPR available | COILS | Coil | Coil | coord: 238..275 |
None | No IPR available | COILS | Coil | Coil | coord: 813..833 |
None | No IPR available | COILS | Coil | Coil | coord: 739..784 |
None | No IPR available | COILS | Coil | Coil | coord: 297..352 |
None | No IPR available | COILS | Coil | Coil | coord: 848..868 |
None | No IPR available | COILS | Coil | Coil | coord: 387..410 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 876..1037 e-value: 4.8E-22 score: 80.3 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 10..235 e-value: 4.3E-36 score: 126.7 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 625..645 |
None | No IPR available | PANTHER | PTHR19306 | STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 | coord: 7..1033 |
None | No IPR available | CDD | cd03277 | ABC_SMC5_euk | coord: 920..1026 e-value: 7.5392E-57 score: 193.196 |
None | No IPR available | CDD | cd03277 | ABC_SMC5_euk | coord: 9..184 e-value: 2.60021E-48 score: 168.928 |
IPR003395 | RecF/RecN/SMC, N-terminal | PFAM | PF02463 | SMC_N | coord: 11..1002 e-value: 1.3E-27 score: 96.5 |
IPR027131 | Structural maintenance of chromosomes protein 5 | PANTHER | PTHR19306:SF1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 | coord: 7..1033 |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 290..342 coord: 880..1011 coord: 11..167 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk03200 ID=Tk03200|Name=Tk03200|organism=Tigriopus kingsejongensis|type=polypeptide|length=1046bp MVGPCQSRGAIEVIALENFMQYDQVSFRPGPHLNVILGPNGSGKSSIVNA ICLGLNGQPSSLGRASHIREFIRLGCERAQTAITLHNPEDETGWTILRQW DVSGRSQWRINGQSVTQKEVDKLIRELNIQTDNLCQFLPQDKVHEFSRMN PREMLTRTIEAVGESQLRRDHDKLKNLQSEIQQGVAIQESRRATLLADQR KLETLEHLVQNFKDKEEKQGRLGALRKKKAYLEYQAEKQTHEAAKARYEA SAKRLTKEEAKLQPLKNKRGNLRKERDRVSAKIRASVAQIRDNIGKAKTR TEKIENMEEELETLEAEIEDLMEKEQKKGEALEQFKLEIMNLERERDEAD KDESVEPQIKSVQRDINAIHQDQANIQDGMRQSQFEMSSLRAMKKRVEDE ISELRNVENQKLEILKSLPNGPDALKAMQWLMNNRTMFQGRIYDPIVTQI NVIDPEDAVYLENTIPFRELVAFVAEDVEDMNQILRQFRDIMKLKVNVVH SDPNEHPDQFQPARNEAPLRPIGFRGWMKDCFTAPDGIKAFLCKTDRLQD IAMFDASAEKNLEKIVEEHGVASFFVGKSRYRVTTSRYSGQKATTSFTVT RRNVLNLSADQSRELDLNARLKDLEDQARSQQGQSEEFKKTMSNSNRELE AKKLELKKLKEVKDYRNVLNGKLAARRKQMQRFIDAQDNTDTEKVRIETR KQRLVVETLRAAHDLKTHILESNRRKVSLEVDKIEEKYLNEYEEHVKLQI EEAEQELAEIREHVEAEKSELRHVEQEFRRLLENAQGIIGNHFPQELRQI EAAFQAHGLPESIEDIELLVEDLDNQVQCLEDTDPRVISNYQSLLVSVQD VEAELANFQKMTDEKRADIETTRQRWLADLLALVDRISQRFSHFFETMGF AGSVVLNRGAHEHDYYNYGIDIMVKYRTHLPLQRLDPHQQSGGERSVATA LYMLALQELTVVPFRCVDEINQGMDAVNERRVFDLLVQTSCHERSAQYFL LTPKLLPDLNYDENMSVLVVHNGQEMVHHSEWDMEAFIQKAIGCAS back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term | Definition |
GO:0006281 | DNA repair |
GO:0007062 | sister chromatid cohesion |
GO:0000724 | double-strand break repair via homologous recombination |
Vocabulary: Cellular Component
Term | Definition |
GO:0030915 | Smc5-Smc6 complex |
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