Tk03200, Tk03200 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk03200
Unique NameTk03200
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length1046
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 614..662
NoneNo IPR availableCOILSCoilCoilcoord: 238..275
NoneNo IPR availableCOILSCoilCoilcoord: 813..833
NoneNo IPR availableCOILSCoilCoilcoord: 739..784
NoneNo IPR availableCOILSCoilCoilcoord: 297..352
NoneNo IPR availableCOILSCoilCoilcoord: 848..868
NoneNo IPR availableCOILSCoilCoilcoord: 387..410
NoneNo IPR availableGENE3D3.40.50.300coord: 876..1037
e-value: 4.8E-22
score: 80.3
NoneNo IPR availableGENE3D3.40.50.300coord: 10..235
e-value: 4.3E-36
score: 126.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 625..645
NoneNo IPR availablePANTHERPTHR19306STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6coord: 7..1033
NoneNo IPR availableCDDcd03277ABC_SMC5_eukcoord: 920..1026
e-value: 7.5392E-57
score: 193.196
NoneNo IPR availableCDDcd03277ABC_SMC5_eukcoord: 9..184
e-value: 2.60021E-48
score: 168.928
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 11..1002
e-value: 1.3E-27
score: 96.5
IPR027131Structural maintenance of chromosomes protein 5PANTHERPTHR19306:SF1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5coord: 7..1033
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 290..342
coord: 880..1011
coord: 11..167

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold50_size457468-snap-gene-0.19-mRNA-1maker-scaffold50_size457468-snap-gene-0.19-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk03200 ID=Tk03200|Name=Tk03200|organism=Tigriopus kingsejongensis|type=polypeptide|length=1046bp
MVGPCQSRGAIEVIALENFMQYDQVSFRPGPHLNVILGPNGSGKSSIVNA
ICLGLNGQPSSLGRASHIREFIRLGCERAQTAITLHNPEDETGWTILRQW
DVSGRSQWRINGQSVTQKEVDKLIRELNIQTDNLCQFLPQDKVHEFSRMN
PREMLTRTIEAVGESQLRRDHDKLKNLQSEIQQGVAIQESRRATLLADQR
KLETLEHLVQNFKDKEEKQGRLGALRKKKAYLEYQAEKQTHEAAKARYEA
SAKRLTKEEAKLQPLKNKRGNLRKERDRVSAKIRASVAQIRDNIGKAKTR
TEKIENMEEELETLEAEIEDLMEKEQKKGEALEQFKLEIMNLERERDEAD
KDESVEPQIKSVQRDINAIHQDQANIQDGMRQSQFEMSSLRAMKKRVEDE
ISELRNVENQKLEILKSLPNGPDALKAMQWLMNNRTMFQGRIYDPIVTQI
NVIDPEDAVYLENTIPFRELVAFVAEDVEDMNQILRQFRDIMKLKVNVVH
SDPNEHPDQFQPARNEAPLRPIGFRGWMKDCFTAPDGIKAFLCKTDRLQD
IAMFDASAEKNLEKIVEEHGVASFFVGKSRYRVTTSRYSGQKATTSFTVT
RRNVLNLSADQSRELDLNARLKDLEDQARSQQGQSEEFKKTMSNSNRELE
AKKLELKKLKEVKDYRNVLNGKLAARRKQMQRFIDAQDNTDTEKVRIETR
KQRLVVETLRAAHDLKTHILESNRRKVSLEVDKIEEKYLNEYEEHVKLQI
EEAEQELAEIREHVEAEKSELRHVEQEFRRLLENAQGIIGNHFPQELRQI
EAAFQAHGLPESIEDIELLVEDLDNQVQCLEDTDPRVISNYQSLLVSVQD
VEAELANFQKMTDEKRADIETTRQRWLADLLALVDRISQRFSHFFETMGF
AGSVVLNRGAHEHDYYNYGIDIMVKYRTHLPLQRLDPHQQSGGERSVATA
LYMLALQELTVVPFRCVDEINQGMDAVNERRVFDLLVQTSCHERSAQYFL
LTPKLLPDLNYDENMSVLVVHNGQEMVHHSEWDMEAFIQKAIGCAS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027131SMC5
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0007062sister chromatid cohesion
GO:0000724double-strand break repair via homologous recombination
Vocabulary: Cellular Component
TermDefinition
GO:0030915Smc5-Smc6 complex
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