Tk11668, Tk11668 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk11668
Unique NameTk11668
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length551
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 58..73
score: 52.84
coord: 93..101
score: 50.43
coord: 101..109
score: 57.87
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 38..112
e-value: 3.8E-31
score: 119.5
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 40..110
e-value: 1.3E-20
score: 73.5
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 41..68
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 38..116
score: 18.377
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 33..144
e-value: 4.1E-26
score: 93.0
NoneNo IPR availableGENE3D1.10.565.10coord: 288..533
e-value: 6.8E-16
score: 60.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..182
NoneNo IPR availablePANTHERPTHR24082:SF331NR1H3 PROTEINcoord: 38..393
NoneNo IPR availablePANTHERPTHR24082NUCLEAR HORMONE RECEPTORcoord: 38..393
NoneNo IPR availableCDDcd06916NR_DBD_likecoord: 41..114
e-value: 4.68299E-27
score: 101.87
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 40..128
IPR000536Nuclear hormone receptor, ligand-binding domainPROSITEPS51843NR_LBDcoord: 292..551
score: 12.29
IPR035500Nuclear hormone receptor-like domain superfamilySUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 332..389

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
snap_masked-scaffold59_size442576-processed-gene-0.17-mRNA-1snap_masked-scaffold59_size442576-processed-gene-0.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk11668 ID=Tk11668|Name=Tk11668|organism=Tigriopus kingsejongensis|type=polypeptide|length=551bp
MSFEESGGASFPGTSSGDFALRDPEESLEGGEVVLEATEECQICKDPSIK
HLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCR
YEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEKHPKTERHPALMSMSG
DKDLSRAVSSSSSMSYYEDPHEGRPPVHPGLMGRDKTPLDHIWGMSQRNG
YPSYAKPAVTMADGIGNPYTRYKMVPKSIHLRSSYPGPSSIPVEAPPPGH
PGYEEDIWNLHEERGQPVSNLRMENLQSLALDVDPGLAITESEVLLLQKL
QHIHDSNYRSVAFGEDLIKSLVMSSAFGVPLSPSHTMMAYRLMIQRVTKV
AQGLDEFTELPVEDQTMLLKSNADLMVSLKGAGFFDNKNRGIDQILYTLG
IDDMDVAKRMVMTTSKTFGCMMNRIDYKSYNSLQDLTNQDMEQRYQWLLG
QVAEVTTLFPSLTKLMTFVVLFLPPEDGVLKDGVRVCRMQKWLLNLAHKL
VISQYSPEIGADLSMKITKICDYLKEITIIKRNRPLIAQVDENSPQPAGV
N
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR013088Znf_NHR/GATA
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR035500NHR_like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003700DNA-binding transcription factor activity
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
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