EMLSAG00000000308, EMLSAG00000000308-683074 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000308
Unique NameEMLSAG00000000308-683074
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000308 vs. C. finmarchicus
Match: gi|592817990|gb|GAXK01136578.1| (TSA: Calanus finmarchicus comp531735_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.200e+0
Identity = 22/59 (37.29%), Postives = 28/59 (47.46%), Query Frame = 0 
Query:   30 EDISSANRPIFIGSFNQPFLNSLVPFLVTFYLFVIFTCLNTIYRYIVTDQDNHSNSNTP 88
             D  S+ R + I    Q    SLVP+L TFY  VIF    TI+ +I    D     N+P
Sbjct:  250 RDKRSSLRTLNICMKKQYLNASLVPWLETFYYKVIFM*QKTIWHFIPMCLDTSQGYNSP 426
[Close]
BLAST of EMLSAG00000000308 vs. C. finmarchicus
Match: gi|592920400|gb|GAXK01037975.1| (TSA: Calanus finmarchicus comp1203774_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.893e+0
Identity = 14/34 (41.18%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:  156 NDVPPSYCITCHTIQTEPLTIFPPPSIIEEESDK 189
             D  P +C TC ++   PL +FP PS   E  DK
Sbjct:  309 KDTFPLFCNTCRSLNQAPLEMFPHPSCASEN*DK 410
[Close]
BLAST of EMLSAG00000000308 vs. L. salmonis peptides
Match: EMLSAP00000000308 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1046:15622:16409:-1 gene:EMLSAG00000000308 transcript:EMLSAT00000000308 description:"maker-LSalAtl2s1046-augustus-gene-0.9")

HSP 1 Score: 397.512 bits (1020), Expect = 5.502e-142
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0 
Query:    1 MDMSNNRLYLRNYSIYQNDRILFNDTTTLEDISSANRPIFIGSFNQPFLNSLVPFLVTFYLFVIFTCLNTIYRYIVTDQDNHSNSNTPVIRNRGMNNNTTVGNVTPPPSYSIFIDSGESILIPPPYKMVLPYIYSSNGNPSSISPSNSITSINEANDVPPSYCITCHTIQTEPLTIFPPPSIIEEESDKSDLNEEEESQYT 201
            MDMSNNRLYLRNYSIYQNDRILFNDTTTLEDISSANRPIFIGSFNQPFLNSLVPFLVTFYLFVIFTCLNTIYRYIVTDQDNHSNSNTPVIRNRGMNNNTTVGNVTPPPSYSIFIDSGESILIPPPYKMVLPYIYSSNGNPSSISPSNSITSINEANDVPPSYCITCHTIQTEPLTIFPPPSIIEEESDKSDLNEEEESQYT
Sbjct:    1 MDMSNNRLYLRNYSIYQNDRILFNDTTTLEDISSANRPIFIGSFNQPFLNSLVPFLVTFYLFVIFTCLNTIYRYIVTDQDNHSNSNTPVIRNRGMNNNTTVGNVTPPPSYSIFIDSGESILIPPPYKMVLPYIYSSNGNPSSISPSNSITSINEANDVPPSYCITCHTIQTEPLTIFPPPSIIEEESDKSDLNEEEESQYT 201
[Close]
BLAST of EMLSAG00000000308 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold201_size263271-snap-gene-0.15 (protein:Tk08038 transcript:maker-scaffold201_size263271-snap-gene-0.15-mRNA-1 annotation:"protein mesh isoform x3")

HSP 1 Score: 51.9878 bits (123), Expect = 2.760e-8
Identity = 26/80 (32.50%), Postives = 42/80 (52.50%), Query Frame = 0 
Query:   52 LVPFLVTFYLFVIFTCLNTIYRYIVTDQDNHSNSNTPVIRNRGMNNNTTVGNVTPPPSYSIFIDSGESILIPPPYKMVLP 131
            L+P ++  YL ++  C      Y+   ++N+              N+ +   +TPPPSY+I I +G+S LIPP YKM+ P
Sbjct:  308 LMPIVIGLYLLLVLICY-----YLFCKKENNWEQELQNQLQHIQQNSASEVEMTPPPSYAILIGNGDSKLIPPSYKMLFP 382
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000308 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000308 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592817990|gb|GAXK01136578.1|1.200e+037.29TSA: Calanus finmarchicus comp531735_c1_seq1 trans... [more]
gi|592920400|gb|GAXK01037975.1|2.893e+041.18TSA: Calanus finmarchicus comp1203774_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000000308 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003085.502e-142100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1046:1562... [more]
back to top
BLAST of EMLSAG00000000308 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000308 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000308 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000308 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold201_size263271-snap-gene-0.152.760e-832.50protein:Tk08038 transcript:maker-scaffold201_size2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1046supercontigLSalAtl2s1046:15622..16409 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1046-augustus-gene-0.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000308 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000308EMLSAT00000000308-696155Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1046:15622..16409-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000308-683074 ID=EMLSAG00000000308-683074|Name=EMLSAG00000000308|organism=Lepeophtheirus salmonis|type=gene|length=788bp|location=Sequence derived from alignment at LSalAtl2s1046:15622..16409- (Lepeophtheirus salmonis)
ATGGATATGAGTAGTAAGTTCTATCCAAAGTAGTAGTTTCAAATCCACCC
TTTCTTTATTTCTTCCAGATAATCGTCTCTATCTACGGAACTACTCCATC
TATCAAAATGATCGCATCCTTTTTAATGACACAACGACTCTTGAAGATAT
ATCCTCGGCTAATCGTCCCATTTTCATCGGATCCTTTAACCAACCTTTCC
TGAACTCTCTCGTACCATTCCTTGTTACTTTCTACTTATTTGTCATATTT
ACTTGTTTAAATACAATCTACAGATATATCGTCACCGATCAAGATGTATG
TAACTAAATTCATTTTTCTTTTTTTTTTCATATTTGAGTGTTTTCTTCTT
AGAATCATTCAAACTCGAACACTCCAGTCATTCGAAATCGAGGAATGAAT
AACAATACCACGGTTGGAAACGTTACACCACCTCCTTCCTATTCTATATT
CATTGACTCTGGAGAATCTATACTCATTCCTCCTCCATATAAAATGGTTT
TGCCATATATATATTCCTCGAATGGAAACCCTTCCTCCATTTCTCCTTCC
AATTCCATTACATCTATTAATGAAGCCAATGGTATTTGTCTCATTATCTT
TATATATATTATAATTGCTATTTTATTTACTCATATCATAATTATACATA
GATGTGCCACCTTCGTATTGCATCACATGTCATACGATACAAACCGAGCC
TCTAACAATTTTCCCTCCTCCTTCGATAATTGAAGAGGAGTCAGATAAAA
GTGACCTAAATGAAGAAGAGGAATCGCAATACACTTAG
back to top
Add to Basket