EMLSAG00000000443, EMLSAG00000000443-683209 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000443
Unique NameEMLSAG00000000443-683209
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000443 vs. L. salmonis peptides
Match: EMLSAP00000000443 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1069:42895:43101:-1 gene:EMLSAG00000000443 transcript:EMLSAT00000000443 description:"snap_masked-LSalAtl2s1069-processed-gene-0.1")

HSP 1 Score: 138.658 bits (348), Expect = 3.215e-44
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 
Query:    1 MTNIQDFHYYFSDLEKKFVQLDWAEDSFLLSEANRSKLIANDQEELLDVSSDLGLHSKFAKSTRTQFW 68
            MTNIQDFHYYFSDLEKKFVQLDWAEDSFLLSEANRSKLIANDQEELLDVSSDLGLHSKFAKSTRTQFW
Sbjct:    1 MTNIQDFHYYFSDLEKKFVQLDWAEDSFLLSEANRSKLIANDQEELLDVSSDLGLHSKFAKSTRTQFW 68
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BLAST of EMLSAG00000000443 vs. nr
Match: gi|765155626|ref|XP_011487766.1| (PREDICTED: SCAN domain-containing protein 3-like isoform X2 [Oryzias latipes])

HSP 1 Score: 71.2478 bits (173), Expect = 1.807e-13
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 0 
Query:    7 FHYYFSDLEKKFVQLDWAEDSFLLSEANRSKLIANDQEELLDVSSDLGLHSKFAKSTRTQFW 68
            F  YF+D+++  VQLDW  + FLLSEANRSKL    QE++ +V+SD GL  K   ST T FW
Sbjct:   62 FRSYFTDMDETSVQLDWVRNPFLLSEANRSKLPVTRQEKVKEVASDRGLQMKCGASTLTPFW 123
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BLAST of EMLSAG00000000443 vs. nr
Match: gi|765155622|ref|XP_011487764.1| (PREDICTED: SCAN domain-containing protein 3-like isoform X1 [Oryzias latipes] >gi|765155624|ref|XP_011487765.1| PREDICTED: SCAN domain-containing protein 3-like isoform X1 [Oryzias latipes])

HSP 1 Score: 70.4774 bits (171), Expect = 2.979e-13
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 0 
Query:    7 FHYYFSDLEKKFVQLDWAEDSFLLSEANRSKLIANDQEELLDVSSDLGLHSKFAKSTRTQFW 68
            F  YF+D+++  VQLDW  + FLLSEANRSKL    QE++ +V+SD GL  K   ST T FW
Sbjct:   66 FRSYFTDMDETSVQLDWVRNPFLLSEANRSKLPVTRQEKVKEVASDRGLQMKCGASTLTPFW 127
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BLAST of EMLSAG00000000443 vs. nr
Match: gi|1101555684|ref|XP_018943789.1| (PREDICTED: SCAN domain-containing protein 3-like [Cyprinus carpio])

HSP 1 Score: 55.8398 bits (133), Expect = 1.548e-7
Identity = 25/63 (39.68%), Postives = 42/63 (66.67%), Query Frame = 0 
Query:    6 DFHYYFSDLEKKFVQLDWAEDSFLLSEANRSKLIANDQEELLDVSSDLGLHSKFAKSTRTQFW 68
            +F++YF D+E K  +LDW  + F+ +E+  + +    QE LLDVSSD GL  +++++  +QFW
Sbjct:  288 EFNHYFPDIESKSAKLDWVRNPFM-TESTDNNIPTRLQENLLDVSSDRGLKMRYSETNLSQFW 349
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000443 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000443 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000443 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004433.215e-44100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1069:4289... [more]
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BLAST of EMLSAG00000000443 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000443 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000443 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 3
Match NameE-valueIdentityDescription
gi|765155626|ref|XP_011487766.1|1.807e-1353.23PREDICTED: SCAN domain-containing protein 3-like i... [more]
gi|765155622|ref|XP_011487764.1|2.979e-1353.23PREDICTED: SCAN domain-containing protein 3-like i... [more]
gi|1101555684|ref|XP_018943789.1|1.548e-739.68PREDICTED: SCAN domain-containing protein 3-like [... [more]
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BLAST of EMLSAG00000000443 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1069supercontigLSalAtl2s1069:42895..43101 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1069-processed-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NotePREDICTED: SCAN domain-containing protein 3-like isoform X2 [Oryzias latipes]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000443 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000443EMLSAT00000000443-696290Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1069:42895..43101-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000443-683209 ID=EMLSAG00000000443-683209|Name=EMLSAG00000000443|organism=Lepeophtheirus salmonis|type=gene|length=207bp|location=Sequence derived from alignment at LSalAtl2s1069:42895..43101- (Lepeophtheirus salmonis)
ATGACTAATATTCAAGATTTTCATTATTACTTTTCTGACTTAGAGAAGAA
ATTTGTACAGCTGGATTGGGCAGAAGACTCATTTCTCTTGTCTGAGGCAA
ATAGAAGCAAACTAATTGCCAATGATCAGGAAGAACTCTTGGATGTGTCA
TCTGACCTTGGTCTCCACTCTAAGTTTGCCAAATCCACACGCACACAGTT
TTGGTGA
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