EMLSAG00000000544, EMLSAG00000000544-683310 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000544
Unique NameEMLSAG00000000544-683310
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000544 vs. L. salmonis peptides
Match: EMLSAP00000000544 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1089:60023:62408:-1 gene:EMLSAG00000000544 transcript:EMLSAT00000000544 description:"snap-LSalAtl2s1089-processed-gene-0.23")

HSP 1 Score: 130.183 bits (326), Expect = 6.002e-41
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 
Query:    1 MKCEKSKLKAKFISQENDVTETKDIRMTSLKLVTSSLLLVIILCSFTSALDTDREIHQDNFDFSSK 66
            MKCEKSKLKAKFISQENDVTETKDIRMTSLKLVTSSLLLVIILCSFTSALDTDREIHQDNFDFSSK
Sbjct:    1 MKCEKSKLKAKFISQENDVTETKDIRMTSLKLVTSSLLLVIILCSFTSALDTDREIHQDNFDFSSK 66
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000544 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000544 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000544 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005446.002e-41100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1089:6002... [more]
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BLAST of EMLSAG00000000544 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000544 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000544 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000544 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1089supercontigLSalAtl2s1089:60023..62408 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1089-processed-gene-0.23
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000544 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000544EMLSAT00000000544-696391Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1089:60023..62408-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000544-683310 ID=EMLSAG00000000544-683310|Name=EMLSAG00000000544|organism=Lepeophtheirus salmonis|type=gene|length=2386bp|location=Sequence derived from alignment at LSalAtl2s1089:60023..62408- (Lepeophtheirus salmonis)
ATGAAATGTGAAAAGTCTAAGCTCAAAGCAAAGTTTATTTCACAAGAAAA
TGATGTCACGGAGTAATTTGATTTTTTCGACAGAAATTTGACTTTCTCTT
AGTATTTAAAATTTGAGTCAGGTTTTGACTGGATAGAGGGAGCTGTAGTG
GCTATTTTTATAGATCAAATAGTCCCTAACTCATTTTGGTTTTTTTTCTG
TTTCTTTTCAAAGGAATAGATTGTGATATACAATAGAAGTAACAAAGTGT
TCCCCCTGATCAGTTTTCTTAACGTGGATTGGTTGGCTTAGAATTAGTAT
CTTTTAAGTTGTAAAAAATACCCAACAATTATTGGATACAAATGCTATGG
TTGGGAAGKATTATTTTGGTGCCTTTTTAATGGTTCTTATCGGATGAAAG
TTTATCAAGATAATTAACGCATAAATTAATTAATAAATGAGAACCTTAAC
GGATGTTTTTTCAGTTAAGAAGGGATGAATGGAAAAATGTGTCTACATGT
CCATTTTGACAGCAAGGGACAATATAAGTAGAAAATCGACAACTGAAAAA
AGAAAAAGATCCGTTTTGAGTTAAAAAGCGCCTACATATATCCACTTAAT
ATTTTTCATAGCTTTTTATTCTTTTAAATCTAATCATTTATGATAAATCA
TTTGTCAGTGTACTGCATATGGCAAAAATATAACTCATTGACAGATGAAA
ATACTTAAAAGGTTCTGTGCTTCGGAATAAAAAAGTTCCGACGATGTTTG
TGTCATAAAACTCGCTTATCATGGCTTTTGTGAATAATAAAAATCCAAGT
TATAGGAAATCAGCGTTGTACGGGGGAATTTTTAGTAATAAAACTCCTAA
AATACGTGAAATTAATTTTCAAAATCCAATTTTATTATTATTTTTTTTGC
ATGATTATAGGACGATAATACATTTTATTCATCAAAAATTATTTTAAATT
ATGTACGCCAAGCAATATACTTGTAAAATTTAATATTACCCTCGTATTTA
GTTGATTTTTAATCAAATCATTTCAATACTGCCAAATTTAAATAATCGGA
ACCTAACCCATATTTATTCAGTAGCCTTTTTAATTCCAAGTTTGTGTAAT
AAATAATAACTAAACGTATTAAGTCCAAGTATCAAATTAAATACTTACAG
GACACTCCCCCTTATGCAAAATTGTAAACTTCTATTATATGAGGTATGAA
CACACTCATCAACCCCTACAAAAATTCTTGTTTAGGTCAATAATATATAG
TTTTGGATAATAAATTATTATAACATATAAAAACGCAATATTAGGGGGAA
TATACCGAATAATTGCAAATATTACGTTATGCAAAATCCGCAGGGGTTGA
AGCTGTGTTATGCATGGACCCCCTGTATTTTAATTTTGCTTCTAAATTAT
AATAATATTTAAAATAATAACGTTTTTTAATCAAGTTATCTGAATAACGG
ATAAAAACGCCTACTTTCTTTGGAAATGACATTCAAAGAATCCTGTAAAG
GAAGAATTATCTGGTGTGGTCAACTTCCGCCATACTTTTAATCAAGAGCA
AGTTTAAAAATTAAATTAACTTGTCATTATTATTCATTTAATAATTATTC
ATAAAACAGTGTAGTCGGTAAGAAAGTTAAACAATAAAGTTACTTAATCA
TTTTGTATTTTTACAATTTTTAATTTATTTTTAAATACATTTTTTTGTCA
ATTACAAATCTCTAATTTTTATCAATAAGGAACACCTGATTTTGGAGTTA
TATGTCCTTTATTTCCTTTTATTAATATTAGTTCATTTGTAAAAAAAAAT
ATCATAAATATTCTTCAAAATAAAATGGTGTCAATATTTTTTTAATGACA
CCATCTTAAAGACTTTATCCTCTAATTCATTATCAATCGATTATAATGTA
TTATATTTATATACTCATTTTTCTGGTGATCACCAAGATTAACAATTTTA
TATAGGGTTGTAAATCTAAGGCATTTTTTAGTGTGCGAGTTTTGTAAATG
TTGGCAACCTATACAATCTTTATTTTTCTAAAACTATTATCATTATTCTT
TAATTCATGAGAAGAGAAAATATAACCACGAACGAGTGTGTATGCTCATA
AATGACGGAGATTAACACTCATCATTTTTTTAGGGATGTATAAGTGTAAA
TTTTCGGGGTTTTTTTTTGTAAAAGGCTTACGATTTACAATTCTACTTTT
ATCCTTCAACGACAAATTTAATATGTACATATTACCTTTCATTTAAGGAC
AAAGGACATCAGAATGACTAGTCTAAAACTTGTAACTTCTTCCCTACTTT
TAGTCATAATACTATGCTCATTCACATCAGCTCTAGACACGGATCGTGAA
ATTCATCAGGACAATTTTGATTTTTCATCTAAGTAA
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