EMLSAG00000000794, EMLSAG00000000794-683560 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000794
Unique NameEMLSAG00000000794-683560
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000794 vs. GO
Match: - (symbol:Lim1 species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of transcription, DNA-templated" evidence=ISS] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP] [GO:0007479 "leg disc proximal/distal pattern formation" evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045892 "negative regulation of transcription, DNA-templated" evidence=IGI] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=IMP] [GO:0048749 "compound eye development" evidence=IMP] [GO:0010468 "regulation of gene expression" evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 EMBL:AE014298 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0048749 GO:GO:0007480 GO:GO:0007479 UniGene:Dm.23547 FlyBase:FBgn0260444 GeneTree:ENSGT00740000114874 OrthoDB:EOG7PP56T eggNOG:NOG257130 KO:K09372 UniGene:Dm.3025 GeneID:31813 KEGG:dme:Dmel_CG11354 CTD:31813 FlyBase:FBgn0026411 EMBL:AF181631 EMBL:AB034690 RefSeq:NP_572505.1 SMR:Q9V472 IntAct:Q9V472 MINT:MINT-756444 STRING:7227.FBpp0071216 EnsemblMetazoa:FBtr0071279 UCSC:CG11354-RA InParanoid:Q9V472 OMA:GARKMRG GenomeRNAi:31813 NextBio:775444 Uniprot:Q9V472)

HSP 1 Score: 55.4546 bits (132), Expect = 6.624e-8
Identity = 43/87 (49.43%), Postives = 47/87 (54.02%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPL------LSD--EFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPP 87
             VWFQNKRSKERRMKQ+TS   P   FF G    RGFP+      L D   F YF  D  F +F Y     P H  PH G +FPG P
Sbjct:  292 QVWFQNKRSKERRMKQITSMGRP--PFFGGARKMRGFPMNLSPGGLDDGPGFPYFAADAKF-EFGYGG---PFH--PHDGPYFPGHP 370
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BLAST of EMLSAG00000000794 vs. GO
Match: - (symbol:lin-11 "Protein lin-11" species:6239 "Caenorhabditis elegans" [GO:0001708 "cell fate specification" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] [GO:0007275 "multicellular organismal development" evidence=IEA] [GO:0007413 "axonal fasciculation" evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0030334 "regulation of cell migration" evidence=IMP] [GO:0040026 "positive regulation of vulval development" evidence=IMP] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045595 "regulation of cell differentiation" evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0001708 GO:GO:0045595 GO:GO:0043565 GO:GO:0008270 GO:GO:0018991 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0030334 Gene3D:2.10.110.10 GO:GO:0007413 GO:GO:0040026 GeneTree:ENSGT00740000114874 OrthoDB:EOG7PP56T eggNOG:NOG257130 HOGENOM:HOG000231630 KO:K09372 EMBL:Z80221 EMBL:X54355 PIR:T27509 RefSeq:NP_492696.1 UniGene:Cel.18452 ProteinModelPortal:P20154 SMR:P20154 IntAct:P20154 STRING:6239.ZC247.3 EnsemblMetazoa:ZC247.3 GeneID:172893 KEGG:cel:CELE_ZC247.3 UCSC:ZC247.3 CTD:172893 WormBase:ZC247.3 InParanoid:P20154 OMA:NDQQFYP NextBio:877423 PRO:PR:P20154 Uniprot:P20154)

HSP 1 Score: 50.0618 bits (118), Expect = 4.483e-6
Identity = 32/78 (41.03%), Postives = 39/78 (50.00%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPLLSDEFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGP 86
             VWFQN+RSKERRMKQ+  G     G+   +  RR      D    FP+D+ F       YPPP   PP +  FF  P
Sbjct:  286 QVWFQNRRSKERRMKQLRFG-----GYRQSRRPRRD-----DIVDMFPNDQQF-------YPPP---PPSNVQFFCDP 343
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BLAST of EMLSAG00000000794 vs. GO
Match: - (symbol:Lhx5 "LIM/homeobox protein Lhx5" species:10116 "Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0021527 "spinal cord association neuron differentiation" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell differentiation" evidence=IEA] [GO:0021766 "hippocampus development" evidence=IEA] [GO:0021846 "cell proliferation in forebrain" evidence=IEA] [GO:0021879 "forebrain neuron differentiation" evidence=IEA] [GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389 RGD:71079 GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879 GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00740000114874 OrthoDB:EOG7PP56T TreeFam:TF315442 eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 GO:GO:0021937 CTD:64211 OMA:QDPMQDD NextBio:290846 EMBL:L35572 PIR:I61573 RefSeq:NP_620605.1 UniGene:Rn.54653 ProteinModelPortal:P61376 SMR:P61376 PRIDE:P61376 Ensembl:ENSRNOT00000001883 GeneID:124451 KEGG:rno:124451 UCSC:RGD:71079 InParanoid:P61376 PRO:PR:P61376 Genevestigator:P61376 Uniprot:P61376)

HSP 1 Score: 44.669 bits (104), Expect = 2.865e-4
Identity = 36/106 (33.96%), Postives = 49/106 (46.23%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPL-----LSDEFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPPPPTLGCPS-GGFLGSGSTGKSP 108
             VWFQN+RSKERRMKQ+++       FF  +  RR  PL      S+  G  P+        Y +Y    + P  + DFF   PP     P+   FL +   G +P
Sbjct:  225 QVWFQNRRSKERRMKQLSALGARRHAFF--RSPRRMRPLGGRLDESEMLGSTPYT------YYGDYQSDYYAPGGNYDFFAHGPPSQAQSPADSSFLAASGPGSTP 322
[Close]
BLAST of EMLSAG00000000794 vs. GO
Match: - (symbol:Lhx5 "LIM homeobox 5" species:10116 "Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0007267 "cell-cell signaling" evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0021527 "spinal cord association neuron differentiation" evidence=IEA;ISO] [GO:0021549 "cerebellum development" evidence=ISO] [GO:0021702 "cerebellar Purkinje cell differentiation" evidence=IEA;ISO] [GO:0021766 "hippocampus development" evidence=IEA;ISO] [GO:0021846 "cell proliferation in forebrain" evidence=IEA;ISO] [GO:0021879 "forebrain neuron differentiation" evidence=IEA;ISO] [GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation" evidence=IEA;ISO] [GO:0042127 "regulation of cell proliferation" evidence=ISO] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=IEA;ISO] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389 RGD:71079 GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879 GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00740000114874 OrthoDB:EOG7PP56T TreeFam:TF315442 eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 GO:GO:0021937 CTD:64211 OMA:QDPMQDD NextBio:290846 EMBL:L35572 PIR:I61573 RefSeq:NP_620605.1 UniGene:Rn.54653 ProteinModelPortal:P61376 SMR:P61376 PRIDE:P61376 Ensembl:ENSRNOT00000001883 GeneID:124451 KEGG:rno:124451 UCSC:RGD:71079 InParanoid:P61376 PRO:PR:P61376 Genevestigator:P61376 Uniprot:P61376)

HSP 1 Score: 44.669 bits (104), Expect = 2.865e-4
Identity = 36/106 (33.96%), Postives = 49/106 (46.23%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPL-----LSDEFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPPPPTLGCPS-GGFLGSGSTGKSP 108
             VWFQN+RSKERRMKQ+++       FF  +  RR  PL      S+  G  P+        Y +Y    + P  + DFF   PP     P+   FL +   G +P
Sbjct:  225 QVWFQNRRSKERRMKQLSALGARRHAFF--RSPRRMRPLGGRLDESEMLGSTPYT------YYGDYQSDYYAPGGNYDFFAHGPPSQAQSPADSSFLAASGPGSTP 322
[Close]
BLAST of EMLSAG00000000794 vs. GO
Match: - (symbol:Lhx5 "LIM homeobox protein 5" species:10090 "Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] [GO:0007267 "cell-cell signaling" evidence=IGI] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0021527 "spinal cord association neuron differentiation" evidence=IGI] [GO:0021549 "cerebellum development" evidence=IGI] [GO:0021702 "cerebellar Purkinje cell differentiation" evidence=IGI] [GO:0021766 "hippocampus development" evidence=IMP] [GO:0021846 "cell proliferation in forebrain" evidence=IMP] [GO:0021879 "forebrain neuron differentiation" evidence=IMP] [GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation" evidence=IGI] [GO:0042127 "regulation of cell proliferation" evidence=IMP] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389 MGI:MGI:107792 GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879 GO:GO:0021527 GO:GO:0021702 OrthoDB:EOG7PP56T TreeFam:TF315442 eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 GO:GO:0021937 CTD:64211 OMA:QDPMQDD EMBL:U61155 EMBL:BC057585 RefSeq:NP_032525.1 UniGene:Mm.5151 ProteinModelPortal:P61375 SMR:P61375 BioGrid:201158 PhosphoSite:P61375 PRIDE:P61375 Ensembl:ENSMUST00000031591 GeneID:16873 KEGG:mmu:16873 UCSC:uc012ecn.1 InParanoid:P61375 NextBio:290846 PRO:PR:P61375 ArrayExpress:P61375 Bgee:P61375 CleanEx:MM_LHX5 Genevestigator:P61375 Uniprot:P61375)

HSP 1 Score: 44.669 bits (104), Expect = 2.865e-4
Identity = 36/106 (33.96%), Postives = 49/106 (46.23%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPL-----LSDEFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPPPPTLGCPS-GGFLGSGSTGKSP 108
             VWFQN+RSKERRMKQ+++       FF  +  RR  PL      S+  G  P+        Y +Y    + P  + DFF   PP     P+   FL +   G +P
Sbjct:  225 QVWFQNRRSKERRMKQLSALGARRHAFF--RSPRRMRPLGGRLDESEMLGSTPYT------YYGDYQSDYYAPGGNYDFFAHGPPSQAQSPADSSFLAASGPGSTP 322
[Close]
BLAST of EMLSAG00000000794 vs. GO
Match: - (symbol:lhx5 "LIM homeobox 5" species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0030900 "forebrain development" evidence=IMP;IDA] [GO:0001654 "eye development" evidence=IGI] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0007275 "multicellular organismal development" evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-980526-484 GO:GO:0005634 GO:GO:0043565 GO:GO:0008270 GO:GO:0030900 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001654 GeneTree:ENSGT00740000114874 OrthoDB:EOG7PP56T TreeFam:TF315442 eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 EMBL:L42547 EMBL:BC098523 RefSeq:NP_571293.1 UniGene:Dr.75068 ProteinModelPortal:P52889 SMR:P52889 BioGrid:78646 STRING:7955.ENSDARP00000075139 Ensembl:ENSDART00000080693 GeneID:30465 KEGG:dre:30465 CTD:64211 InParanoid:P52889 OMA:QDPMQDD NextBio:20806859 PRO:PR:P52889 Bgee:P52889 Uniprot:P52889)

HSP 1 Score: 43.5134 bits (101), Expect = 6.020e-4
Identity = 37/102 (36.27%), Postives = 46/102 (45.10%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPL---LSD-------EFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPPPPTLGCPSGGFLG 100
             VWFQN+RSKERRMKQ+++       FF  +G RR  PL   L D        + Y+   +G +     NY    H PP S    P   P  L   SG   G
Sbjct:  225 QVWFQNRRSKERRMKQLSALGARRHAFF--RGPRRMRPLGGRLEDPDIMGPGGYSYYGEYQGDYYGPVVNYDFFPHGPPSSQAHSPAESPYLLSSGSGALEG 324
[Close]
BLAST of EMLSAG00000000794 vs. C. finmarchicus
Match: gi|592921702|gb|GAXK01036673.1| (TSA: Calanus finmarchicus comp407670_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 5.915e-4
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 0 
Query:   10 VWFQNKRSKERRMKQMTSGMV 30
            VWFQNKRSKERRMKQ++ GM+
Sbjct:  873 VWFQNKRSKERRMKQLSHGML 935
[Close]
BLAST of EMLSAG00000000794 vs. C. finmarchicus
Match: gi|592921701|gb|GAXK01036674.1| (TSA: Calanus finmarchicus comp407670_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 5.964e-4
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 0 
Query:   10 VWFQNKRSKERRMKQMTSGMV 30
            VWFQNKRSKERRMKQ++ GM+
Sbjct:  858 VWFQNKRSKERRMKQLSHGML 920
[Close]
BLAST of EMLSAG00000000794 vs. C. finmarchicus
Match: gi|592899385|gb|GAXK01058990.1| (TSA: Calanus finmarchicus comp127073_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 38.5058 bits (88), Expect = 1.283e-2
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 0 
Query:   10 VWFQNKRSKERRMKQMT 26
            VWFQNKRSKERRMKQ+ 
Sbjct:  733 VWFQNKRSKERRMKQLA 783
[Close]
BLAST of EMLSAG00000000794 vs. C. finmarchicus
Match: gi|592899386|gb|GAXK01058989.1| (TSA: Calanus finmarchicus comp127073_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 38.5058 bits (88), Expect = 1.285e-2
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 0 
Query:   10 VWFQNKRSKERRMKQMT 26
            VWFQNKRSKERRMKQ+ 
Sbjct:  749 VWFQNKRSKERRMKQLA 799
[Close]
BLAST of EMLSAG00000000794 vs. C. finmarchicus
Match: gi|592821633|gb|GAXK01132935.1| (TSA: Calanus finmarchicus comp27306_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 36.965 bits (84), Expect = 2.673e-2
Identity = 28/80 (35.00%), Postives = 34/80 (42.50%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMT--SG--------MVXXXXXXXXXXXXXXXXLLSDEFGYFP---HDKGFHDFSYSNYPPPSHL 75
             VWFQNKRSKE+RM QM   SG        M           G         E+G FP    +   HD  + +YP P H+
Sbjct:  314 QVWFQNKRSKEKRMHQMRYMSGAFRGPMHPMFAPPNAIAFNYGPSFPQSFPPEYGCFPGSMPEMNLHDMPHHSYPSPPHI 553
[Close]
BLAST of EMLSAG00000000794 vs. C. finmarchicus
Match: gi|592821634|gb|GAXK01132934.1| (TSA: Calanus finmarchicus comp27306_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.012e-1
Identity = 28/79 (35.44%), Postives = 34/79 (43.04%), Query Frame = 0 
Query:   10 VWFQNKRSKERRMKQMT--SG--------MVXXXXXXXXXXXXXXXXLLSDEFGYFP---HDKGFHDFSYSNYPPPSHL 75
            VWFQNKRSKE+RM QM   SG        M           G         E+G FP    +   HD  + +YP P H+
Sbjct: 1292 VWFQNKRSKEKRMHQMRYMSGAFRGPMHPMFAPPNAIAFNYGPSFPQSFPPEYGCFPGSMPEMNLHDMPHHSYPSPPHI 1528
[Close]
BLAST of EMLSAG00000000794 vs. C. finmarchicus
Match: gi|592841556|gb|GAXK01115988.1| (TSA: Calanus finmarchicus comp168005_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 6.006e-1
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 0 
Query:   10 VWFQNKRSKERRMKQM 25
            VWFQNKRSK++R+ QM
Sbjct:  874 VWFQNKRSKQKRINQM 921
[Close]
BLAST of EMLSAG00000000794 vs. C. finmarchicus
Match: gi|592822784|gb|GAXK01131784.1| (TSA: Calanus finmarchicus comp161338_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.691e+0
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 0 
Query:   10 VWFQNKRSKERRMKQMTS 27
            VWFQNKRSK +R+ +M S
Sbjct:  584 VWFQNKRSKRKRISKMQS 637
[Close]
BLAST of EMLSAG00000000794 vs. C. finmarchicus
Match: gi|592765483|gb|GAXK01189085.1| (TSA: Calanus finmarchicus comp360802_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.120e+0
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQ 24
             VWFQN+R+KE+R+K+
Sbjct:  770 QVWFQNRRAKEKRLKK 817
[Close]
BLAST of EMLSAG00000000794 vs. C. finmarchicus
Match: gi|592921628|gb|GAXK01036747.1| (TSA: Calanus finmarchicus comp407007_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 2.424e+0
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 0 
Query:   10 VWFQNKRSKERRMKQM 25
            VWFQNKRSK++R+ Q+
Sbjct:  821 VWFQNKRSKQKRIHQL 868
[Close]
BLAST of EMLSAG00000000794 vs. L. salmonis peptides
Match: EMLSAP00000000794 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11338:317:1090:1 gene:EMLSAG00000000794 transcript:EMLSAT00000000794 description:"snap_masked-LSalAtl2s11338-processed-gene-0.1")

HSP 1 Score: 403.29 bits (1035), Expect = 4.211e-144
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 
Query:    1 MWLQHLSSNVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPLLSDEFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPPPPTLGCPSGGFLGSGSTGKSPNSIYREHHYLIVGPPGMDQPLPPMHGPIGPPSNGPPINPPPVNSSQSPASSPNNNNNIKYTSSSSSSNNTNPSDFGSNGANPSSVVLGPGGEGSGKMDS 207
            MWLQHLSSNVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPLLSDEFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPPPPTLGCPSGGFLGSGSTGKSPNSIYREHHYLIVGPPGMDQPLPPMHGPIGPPSNGPPINPPPVNSSQSPASSPNNNNNIKYTSSSSSSNNTNPSDFGSNGANPSSVVLGPGGEGSGKMDS
Sbjct:    1 MWLQHLSSNVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPLLSDEFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPPPPTLGCPSGGFLGSGSTGKSPNSIYREHHYLIVGPPGMDQPLPPMHGPIGPPSNGPPINPPPVNSSQSPASSPNNNNNIKYTSSSSSSNNTNPSDFGSNGANPSSVVLGPGGEGSGKMDS 207
[Close]
BLAST of EMLSAG00000000794 vs. Select Arthropod Genomes
Match: EAA05265.3 (AGAP011134-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 56.6102 bits (135), Expect = 1.078e-8
Identity = 46/85 (54.12%), Postives = 49/85 (57.65%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRG-FFPGKGGRRGFPL-LS----DE--FGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPG 85
             VWFQNKRSKERR+KQ+TS    GRG FF G    RGFP+ LS    DE  F YF  D  F DF Y    PP H  PH   FF G
Sbjct:  289 QVWFQNKRSKERRLKQLTS---MGRGPFFGGARKMRGFPMNLSPGGLDEPGFPYFAADGKF-DFGYGG--PPFH--PHDAPFFGG 365
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BLAST of EMLSAG00000000794 vs. Select Arthropod Genomes
Match: AAF46413.2 (LIM homeobox 1, isoform A [Drosophila melanogaster])

HSP 1 Score: 55.4546 bits (132), Expect = 2.518e-8
Identity = 43/87 (49.43%), Postives = 47/87 (54.02%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPL------LSD--EFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPP 87
             VWFQNKRSKERRMKQ+TS   P   FF G    RGFP+      L D   F YF  D  F +F Y     P H  PH G +FPG P
Sbjct:  292 QVWFQNKRSKERRMKQITSMGRP--PFFGGARKMRGFPMNLSPGGLDDGPGFPYFAADAKF-EFGYGG---PFH--PHDGPYFPGHP 370
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BLAST of EMLSAG00000000794 vs. Select Arthropod Genomes
Match: gb|EFA05667.1| (lim1 [Tribolium castaneum])

HSP 1 Score: 55.4546 bits (132), Expect = 2.829e-8
Identity = 42/85 (49.41%), Postives = 46/85 (54.12%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRG-FFPGKGGRRGFPL------LSD---EFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFF 83
             VWFQNKRSKERR+KQ+TS    GRG FF G    RGFP+      L D    F YF    G  +F Y    PP H  PH G FF
Sbjct:  346 QVWFQNKRSKERRLKQLTS---MGRGPFFGGSRKMRGFPMNLSPGGLEDGPPGFPYFATADGKFEFGYGG--PPFH--PHDGPFF 423
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BLAST of EMLSAG00000000794 vs. Select Arthropod Genomes
Match: AGB95201.1 (LIM homeobox 1, isoform B [Drosophila melanogaster])

HSP 1 Score: 55.0694 bits (131), Expect = 3.292e-8
Identity = 43/87 (49.43%), Postives = 47/87 (54.02%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPL------LSD--EFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPP 87
             VWFQNKRSKERRMKQ+TS   P   FF G    RGFP+      L D   F YF  D  F +F Y     P H  PH G +FPG P
Sbjct:  134 QVWFQNKRSKERRMKQITSMGRP--PFFGGARKMRGFPMNLSPGGLDDGPGFPYFAADAKF-EFGYGG---PFH--PHDGPYFPGHP 212
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BLAST of EMLSAG00000000794 vs. Select Arthropod Genomes
Match: gb|KFM57394.1| (LIM/homeobox protein Lhx1, partial [Stegodyphus mimosarum])

HSP 1 Score: 51.6026 bits (122), Expect = 3.547e-7
Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRGFF--PGKGGRRGFPLLSDEFGYFPHDKGFHDFSYSNYPPPSHLPPHSG--DFFPG 85
             VWFQN+RSKERRMKQ++S +   R FF  P +  R     L +E    PH+  F  FS SN P   +  PH G  D+FPG
Sbjct:   72 QVWFQNRRSKERRMKQLSS-LGARRHFFRNPRRAMRPLRAGLMEE--GIPHNAAFAYFSDSNSPNDFNYGPHPGFYDYFPG 149
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BLAST of EMLSAG00000000794 vs. nr
Match: gi|1121121026|ref|XP_019549239.1| (PREDICTED: LIM/homeobox protein Lhx1-like, partial [Aedes albopictus])

HSP 1 Score: 58.9214 bits (141), Expect = 3.250e-7
Identity = 49/90 (54.44%), Postives = 52/90 (57.78%), Query Frame = 0 
Query:    6 LSSNVWFQNKRSKERRMKQMTSGMVPGRG-FFPGKGGRRGFPL-LS----DE--FGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPP 87
            L   VWFQNKRSKERR+KQ+TS    GRG FF G    RGFP+ LS    DE  F YF  D  F DF Y    PP H  PH   FFPG P
Sbjct:   43 LQLQVWFQNKRSKERRLKQLTSM---GRGPFFGGARKMRGFPMNLSPGGLDEPGFPYFASDGKF-DFGYGG--PPFH--PHDAPFFPGHP 124
[Close]
BLAST of EMLSAG00000000794 vs. nr
Match: gi|1108474210|emb|CRK98066.1| (CLUMA_CG011435, isoform A [Clunio marinus])

HSP 1 Score: 59.6918 bits (143), Expect = 3.971e-7
Identity = 48/87 (55.17%), Postives = 51/87 (58.62%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRG-FFPGKGGRRGFPL-LS----DE--FGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPP 87
             VWFQNKRSKERR+KQ+TS    GRG FF G    RGFP+ LS    DE  F YF  DK   DF Y    PP H  PH   FFPG P
Sbjct:  285 QVWFQNKRSKERRLKQLTS---MGRGPFFGGSRKMRGFPMNLSPGGLDEPGFPYFASDK--FDFGYGG--PPFH--PHESPFFPGHP 362
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BLAST of EMLSAG00000000794 vs. nr
Match: gi|936679310|ref|XP_014231095.1| (PREDICTED: LIM/homeobox protein Lhx1 [Trichogramma pretiosum])

HSP 1 Score: 59.3066 bits (142), Expect = 6.188e-7
Identity = 46/94 (48.94%), Postives = 51/94 (54.26%), Query Frame = 0 
Query:    9 NVWFQNKRSKERRMKQMTSGMVPGRG-FFPGKGGRRGFPL------LSDE------FGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPPPP 89
             VWFQNKRSKERR+KQ+TS    GR  FF G    RGFPL      L++E      F YF  DK   DF Y N  P  H      +FFPG PPP
Sbjct:  278 QVWFQNKRSKERRLKQLTS---MGRSPFFGGSRKIRGFPLNLNHGGLANEDGPPPGFSYFA-DK--FDFGYGNPVPFHH------EFFPGHPPP 359
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BLAST of EMLSAG00000000794 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold865_size87005-snap-gene-0.17 (protein:Tk05472 transcript:maker-scaffold865_size87005-snap-gene-0.17-mRNA-1 annotation:"lim homeobox protein lhx1-like")

HSP 1 Score: 124.02 bits (310), Expect = 2.089e-34
Identity = 99/209 (47.37%), Postives = 118/209 (56.46%), Query Frame = 0 
Query:    3 LQHLSSNVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPLLSDEFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPPPPTLGCPSGGFLGSGSTGKSPNSIYREHHYLIVGPPGMDQPLPPMH------GPIGPP------SNGPPINP---------PPVNSSQSPASSPNNNNNIKYTSSSSSSNNTNPSDFGSNGANP 190
            L      VWFQNKRSKERRMKQM++ MV GRGFFPGKGGRRGFPL+ D+FGYFPHDK +HDF Y    PP+ +PP  G FFP PP P       G++G G                 VG P MDQPL PMH      GP+GPP      S G P  P         PP NS+    SSP ++ N    S++S+ N+  P+  GS G+NP
Sbjct:  123 LSMRVIQVWFQNKRSKERRMKQMSNSMVAGRGFFPGKGGRRGFPLIGDDFGYFPHDKPYHDFGY----PPNFVPPPDG-FFPVPPGPM------GYMGPG-----------------VG-PHMDQPL-PMHGGPMNSGPMGPPPSMTPNSGGGPDFPGSEFPLGEMPPPNSN----SSPEDDFNSSTGSANSNQNSVTPTGNGS-GSNP 296
[Close]
BLAST of EMLSAG00000000794 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold355_size198070-snap-gene-0.37 (protein:Tk03310 transcript:maker-scaffold355_size198070-snap-gene-0.37-mRNA-1 annotation:"lim homeobox protein lhx1-like")

HSP 1 Score: 124.02 bits (310), Expect = 2.089e-34
Identity = 99/209 (47.37%), Postives = 118/209 (56.46%), Query Frame = 0 
Query:    3 LQHLSSNVWFQNKRSKERRMKQMTSGMVPGRGFFPGKGGRRGFPLLSDEFGYFPHDKGFHDFSYSNYPPPSHLPPHSGDFFPGPPPPTLGCPSGGFLGSGSTGKSPNSIYREHHYLIVGPPGMDQPLPPMH------GPIGPP------SNGPPINP---------PPVNSSQSPASSPNNNNNIKYTSSSSSSNNTNPSDFGSNGANP 190
            L      VWFQNKRSKERRMKQM++ MV GRGFFPGKGGRRGFPL+ D+FGYFPHDK +HDF Y    PP+ +PP  G FFP PP P       G++G G                 VG P MDQPL PMH      GP+GPP      S G P  P         PP NS+    SSP ++ N    S++S+ N+  P+  GS G+NP
Sbjct:  123 LSMRVIQVWFQNKRSKERRMKQMSNSMVAGRGFFPGKGGRRGFPLIGDDFGYFPHDKPYHDFGY----PPNFVPPPDG-FFPVPPGPM------GYMGPG-----------------VG-PHMDQPL-PMHGGPMNSGPMGPPPSMTPNSGGGPDFPGSEFPLGEMPPPNSN----SSPEDDFNSSTGSANSNQNSVTPTGNGS-GSNP 296
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000794 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 6
Match NameE-valueIdentityDescription
-6.624e-849.43symbol:Lim1 species:7227 "Drosophila melanogaster"... [more]
-4.483e-641.03symbol:lin-11 "Protein lin-11" species:6239 "Caeno... [more]
-2.865e-433.96symbol:Lhx5 "LIM/homeobox protein Lhx5" species:10... [more]
-2.865e-433.96symbol:Lhx5 "LIM homeobox 5" species:10116 "Rattus... [more]
-2.865e-433.96symbol:Lhx5 "LIM homeobox protein 5" species:10090... [more]
-6.020e-436.27symbol:lhx5 "LIM homeobox 5" species:7955 "Danio r... [more]
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BLAST of EMLSAG00000000794 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 10
Match NameE-valueIdentityDescription
gi|592921702|gb|GAXK01036673.1|5.915e-480.95TSA: Calanus finmarchicus comp407670_c0_seq1 trans... [more]
gi|592921701|gb|GAXK01036674.1|5.964e-480.95TSA: Calanus finmarchicus comp407670_c0_seq2 trans... [more]
gi|592899385|gb|GAXK01058990.1|1.283e-288.24TSA: Calanus finmarchicus comp127073_c1_seq2 trans... [more]
gi|592899386|gb|GAXK01058989.1|1.285e-288.24TSA: Calanus finmarchicus comp127073_c1_seq1 trans... [more]
gi|592821633|gb|GAXK01132935.1|2.673e-235.00TSA: Calanus finmarchicus comp27306_c0_seq2 transc... [more]
gi|592821634|gb|GAXK01132934.1|1.012e-135.44TSA: Calanus finmarchicus comp27306_c0_seq1 transc... [more]
gi|592841556|gb|GAXK01115988.1|6.006e-175.00TSA: Calanus finmarchicus comp168005_c0_seq1 trans... [more]
gi|592822784|gb|GAXK01131784.1|1.691e+066.67TSA: Calanus finmarchicus comp161338_c0_seq1 trans... [more]
gi|592765483|gb|GAXK01189085.1|2.120e+062.50TSA: Calanus finmarchicus comp360802_c0_seq1 trans... [more]
gi|592921628|gb|GAXK01036747.1|2.424e+068.75TSA: Calanus finmarchicus comp407007_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000794 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000007944.211e-144100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s11338:317... [more]
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BLAST of EMLSAG00000000794 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000794 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 5
Match NameE-valueIdentityDescription
EAA05265.31.078e-854.12AGAP011134-PA [Anopheles gambiae str. PEST][more]
AAF46413.22.518e-849.43LIM homeobox 1, isoform A [Drosophila melanogaster... [more]
gb|EFA05667.1|2.829e-849.41lim1 [Tribolium castaneum][more]
AGB95201.13.292e-849.43LIM homeobox 1, isoform B [Drosophila melanogaster... [more]
gb|KFM57394.1|3.547e-745.68LIM/homeobox protein Lhx1, partial [Stegodyphus mi... [more]
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BLAST of EMLSAG00000000794 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 3
Match NameE-valueIdentityDescription
gi|1121121026|ref|XP_019549239.1|3.250e-754.44PREDICTED: LIM/homeobox protein Lhx1-like, partial... [more]
gi|1108474210|emb|CRK98066.1|3.971e-755.17CLUMA_CG011435, isoform A [Clunio marinus][more]
gi|936679310|ref|XP_014231095.1|6.188e-748.94PREDICTED: LIM/homeobox protein Lhx1 [Trichogramma... [more]
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BLAST of EMLSAG00000000794 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold865_size87005-snap-gene-0.172.089e-3447.37protein:Tk05472 transcript:maker-scaffold865_size8... [more]
maker-scaffold355_size198070-snap-gene-0.372.089e-3447.37protein:Tk03310 transcript:maker-scaffold355_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s11338supercontigLSalAtl2s11338:317..1090 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s11338-processed-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000794 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000794EMLSAT00000000794-696641Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s11338:317..1090+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000794-683560 ID=EMLSAG00000000794-683560|Name=EMLSAG00000000794|organism=Lepeophtheirus salmonis|type=gene|length=774bp|location=Sequence derived from alignment at LSalAtl2s11338:317..1090+ (Lepeophtheirus salmonis)
AAAAACATTAATTCGTCAAACTGATGTGGTTACAACACCTGTCAAGTAAT
GTGCGTATAGCCCAAAAACTAAGAGTTTTATTTTTGAGCASGAGCCAAGA
CGTAAAACTTACATCCATATTCAAAAGCAGCTGGAATGACGAAYCCCCGC
TTCCATTCTATTCTCTCCTCTTCTTTCCAGGTTTGGTTTCAAAACAAACG
GAGTAAAGAGAGACGAATGAAACAAATGACGAGTGGAATGGTACCTGGCC
GTGGATTCTTCCCAGGGAAAGGAGGACGTCGTGGATTCCCACTCCTGAGT
GATGAATTTGGATATTTCCCGCATGACAAGGGCTTCCATGACTTTAGTTA
CTCCAACTATCCACCGCCATCACATCTTCCACCTCATTCCGGGGATTTCT
TTCCTGGTCCACCACCACCAACATTAGGGTGTCCCAGTGGTGGATTCCTT
GGGAGTGGTAGCACAGGTAAGAGTCCAAACAGTATCTATCGTGAACATCA
TTATCTCATTGTAGGTCCCCCAGGAATGGATCAACCCTTACCGCCCATGC
ATGGTCCAATAGGCCCTCCTTCCAACGGTCCGCCCATCAATCCACCTCCA
GTTAATTCCAGTCAGAGTCCGGCTTCCTCTCCGAATAACAATAACAACAT
TAAATATACCTCCTCTTCATCCTCCAGTAACAACACAAATCCATCAGACT
TTGGATCCAACGGAGCTAATCCATCTTCTGTGGTCCTTGGTCCTGGCGGT
GAAGGGAGTGGAAAGATGGATTCT
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