EMLSAG00000000895, EMLSAG00000000895-683661 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000895 vs. C. finmarchicus
Match: gi|592922446|gb|GAXK01035943.1| (TSA: Calanus finmarchicus comp108548_c1_seq1 transcribed RNA sequence) HSP 1 Score: 44.669 bits (104), Expect = 5.787e-4 Identity = 24/55 (43.64%), Postives = 31/55 (56.36%), Query Frame = 0 Query: 1 MSFLTEVSSSAGGNNNLDYTNTQTTHESSNYDYHLPHTKTIDLIGEEFAPRKDSP 55 MSF+TE ++ T E YDY LPH+KT+DLIGEEF +K+ P Sbjct: 3345 MSFMTEAAA---------------TLEYETYDYSLPHSKTVDLIGEEFI-KKEHP 3461 HSP 2 Score: 38.891 bits (89), Expect = 2.832e-2 Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 0 Query: 320 STVQVQVKP--------QTLQLTGLDASKLT----VLQELPDVSKVVIQDPHGKSIQNSNIGNILEDIK 376 STVQ+Q+K QT + +D +KLT V+QELP+VSK+V Q+ + +I NILE++K Sbjct: 2733 STVQIQLKAMSSMPSSGQTFNIPTIDTTKLTGQLSVVQELPEVSKLVFQE---VKQEPDSIVNILENMK 2930 HSP 3 Score: 37.3502 bits (85), Expect = 1.079e-1 Identity = 16/26 (61.54%), Postives = 19/26 (73.08%), Query Frame = 0 Query: 177 GVLLCNLDELSRYIPETFYSDFNITE 202 GVL CNLD+LS+YIP+ F D I E Sbjct: 3114 GVLYCNLDDLSKYIPDNFNFDTIIPE 3191
BLAST of EMLSAG00000000895 vs. C. finmarchicus
Match: gi|592804799|gb|GAXK01149769.1| (TSA: Calanus finmarchicus comp839136_c0_seq1 transcribed RNA sequence) HSP 1 Score: 42.3578 bits (98), Expect = 2.001e-3 Identity = 16/19 (84.21%), Postives = 16/19 (84.21%), Query Frame = 0 Query: 33 YHLPHTKTIDLIGEEFAPR 51 Y LPHTK IDLIGEEF PR Sbjct: 377 YALPHTKAIDLIGEEFVPR 433
BLAST of EMLSAG00000000895 vs. L. salmonis peptides
Match: EMLSAP00000000895 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1157:105799:107734:1 gene:EMLSAG00000000895 transcript:EMLSAT00000000895 description:"maker-LSalAtl2s1157-snap-gene-1.18") HSP 1 Score: 749.199 bits (1933), Expect = 0.000e+0 Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 0 Query: 1 MSFLTEVSSSAGGNNNLDYTNTQTTHESSNYDYHLPHTKTIDLIGEEFAPRKDSPTITTGSSIAIVTSSGGLPVSSTFFLNSNNILTTLAPLSGSNSSLLQAISASGGQVVTLPNVSSLNHHDIINSTSVSTSSVSAENSTVISTLPFNAGTHISDVMQQTSITPTTSSNSNTEENGVLLCNLDELSRYIPETFYSDFNITEPKLDYLESKQNMSSLTSVSALGSSSIMVSSGSPILSTTAASTSLQSPFHQSGTPITIQLPTQPQPQQGIKTLTYVQNSKNSTVNTTSLQPVKLTTGFAYTATGEKISIQGLTDTNKNSTVQVQVKPQTLQLTGLDASKLTVLQELPDVSKVVIQDPHGKSIQNSNIGNILEDIKTGSNNN 382 MSFLTEVSSSAGGNNNLDYTNTQTTHESSNYDYHLPHTKTIDLIGEEFAPRKDSPTITTGSSIAIVTSSGGLPVSSTFFLNSNNILTTLAPLSGSNSSLLQAISASGGQVVTLPNVSSLNHHDIINSTSVSTSSVSAENSTVISTLPFNAGTHISDVMQQTSITPTTSSNSNTEENGVLLCNLDELSRYIPETFYSDFNITEPKLDYLESKQNMSSLTSVSALGSSSIMVSSGSPILSTTAASTSLQSPFHQSGTPITIQLPTQPQPQQGIKTLTYVQNSKNSTVNTTSLQPVKLTTGFAYTATGEKISIQGLTDTNKNSTVQVQVKPQTLQLTGLDASKLTVLQELPDVSKVVIQDPHGKSIQNSNIGNILEDIKTGSNNN Sbjct: 1 MSFLTEVSSSAGGNNNLDYTNTQTTHESSNYDYHLPHTKTIDLIGEEFAPRKDSPTITTGSSIAIVTSSGGLPVSSTFFLNSNNILTTLAPLSGSNSSLLQAISASGGQVVTLPNVSSLNHHDIINSTSVSTSSVSAENSTVISTLPFNAGTHISDVMQQTSITPTTSSNSNTEENGVLLCNLDELSRYIPETFYSDFNITEPKLDYLESKQNMSSLTSVSALGSSSIMVSSGSPILSTTAASTSLQSPFHQSGTPITIQLPTQPQPQQGIKTLTYVQNSKNSTVNTTSLQPVKLTTGFAYTATGEKISIQGLTDTNKNSTVQVQVKPQTLQLTGLDASKLTVLQELPDVSKVVIQDPHGKSIQNSNIGNILEDIKTGSNNN 382
BLAST of EMLSAG00000000895 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold733_size105121-snap-gene-0.19 (protein:Tk04997 transcript:maker-scaffold733_size105121-snap-gene-0.19-mRNA-1 annotation:"hypothetical protein KGM_19023") HSP 1 Score: 142.124 bits (357), Expect = 3.386e-37 Identity = 142/385 (36.88%), Postives = 197/385 (51.17%), Query Frame = 0 Query: 36 PHTKTIDLIGEEFAPR-KDSPTITTGSSIAIVTSSGGLPVSSTFFLNSNNI----LTTLAPLSGSNSSLLQAISASGGQVVTLPNVSSLNHHDIINSTSVSTSSVSAENSTVISTLPFNAGTHISDVMQQTSITPTTSSNSNTEENG-VLLCNLDELSRYIPETFYSDFNITEPKLDYLESKQNMSSLT-------SVSALGSSSIMVSSGSPILSTTAASTSL------------------QSPFHQSGTPITIQLPTQPQPQQGIKTLTYVQNSKNS---TVNTTSLQPVKLT-TGFAYTATGEKISIQGLTDT--NKNSTVQVQVK----PQTLQLTGL--DASKLTVLQELPDVSKVVIQDPHGKSIQNSNIGNILEDIKT 377 P IDLIGEEF+PR +S ++ S+I V +S S+ F + ++AP+S +S S G ++P++ N + S STV LP S+ + T+ENG VLLCN+DELSRYIPE FY+D N T+ LE+ S+ + + + S+ I+ S IL T+ TSL HQ P IQLPTQPQP Q +K++ Y+Q S++ +NT SLQPVKLT TG+A T++GE+I+I GL + NK +Q+Q+K PQT+QL GL D SKLTVLQELP+ SKVVI +P+ I N +I NILE+++T Sbjct: 10 PLENRIDLIGEEFSPRCAESLLVSAYSNIGSVVTSHATGTSTIFTTTGIPVSVVSAASMAPIS------TVIVSTSDG---SIPSIVDPN-----HHHHHHHHQTSVPLSTVTVDLP--------------SVPASGHGTVATDENGGVLLCNIDELSRYIPENFYADLNFTDAS--TLEATTVASAASTPIHSTHATAKFSSTPIISLSNGTILQATSPMTSLPLSITQPLNITQGMASLSAGHHHQMNLPTVIQLPTQPQPPQAVKSMAYLQTSRHQHTIPINTASLQPVKLTPTGYALTSSGERITIHGLDPSTLNKGHPLQIQLKHGGIPQTIQLNGLNIDTSKLTVLQELPENSKVVIHEPN--KIHNDSISNILEEMRT 362 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000895 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000895 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000000895 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000895 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000895 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000895 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000895 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1157:105799..107734+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000895-683661 ID=EMLSAG00000000895-683661|Name=EMLSAG00000000895|organism=Lepeophtheirus salmonis|type=gene|length=1936bp|location=Sequence derived from alignment at LSalAtl2s1157:105799..107734+ (Lepeophtheirus salmonis)back to top Add to Basket
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