EMLSAG00000000956, EMLSAG00000000956-683722 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000956
Unique NameEMLSAG00000000956-683722
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000956 vs. C. finmarchicus
Match: gi|592752371|gb|GAXK01202042.1| (TSA: Calanus finmarchicus comp87800_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 50.447 bits (119), Expect = 1.617e-5
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 0
Query:  254 ERSVADSTISDADLPGFPANLRQI------YPYDEFHGLPQ----GHS--PKRLSLDERLEKELGINV-REVHPPQDF 318
            +R++ DSTISDADL       RQ+      Y Y +F  L      G+S  PKRLSLDERLE+E GI +  E  PP DF
Sbjct:  424 DRNLPDSTISDADL------ARQMPPPSLHYKYKQFGALASPAASGYSDSPKRLSLDERLEREHGIKIEHEQTPPMDF 639          

HSP 2 Score: 43.8986 bits (102), Expect = 1.483e-3
Identity = 19/25 (76.00%), Postives = 23/25 (92.00%), Query Frame = 0
Query:  585 DEEWVPRSPVPLPDVSTCKPILMQP 609
            DEE+VPRSPVPLPD ST KP+L++P
Sbjct: 1249 DEEFVPRSPVPLPDNSTLKPVLVKP 1323          
BLAST of EMLSAG00000000956 vs. L. salmonis peptides
Match: EMLSAP00000000956 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1166:78147:81151:-1 gene:EMLSAG00000000956 transcript:EMLSAT00000000956 description:"maker-LSalAtl2s1166-snap-gene-0.70")

HSP 1 Score: 1297.34 bits (3356), Expect = 0.000e+0
Identity = 651/651 (100.00%), Postives = 651/651 (100.00%), Query Frame = 0
Query:    1 MDDGNEDEVIIKSFKKKKKQKKEKKTKKSKKNSDRKDQAASPLMDEEIITDKSIGXCNIGTWEDPMKLTEISISSHCDDDVRSPSPPPSSSKSKKIHSKDPRTRSLFAVAGYGYEEDNSQSLNNSHGPRTPSPKSSSRGPRTPSPKSKSNWRPPSPRISPPREIDGGGVGSSGSPGSSRKYRRRSRSRSYDRCSSGGGXSRHSRHSRSPSHHRRSAPHRRSSRSPRRSSHRHHRSPSPISHYDANTNNPPYHLERSVADSTISDADLPGFPANLRQIYPYDEFHGLPQGHSPKRLSLDERLEKELGINVREVHPPQDFSIPPPGYPIRVPPPLVPSHPPPLILSHMIHADPAIHHHHLPPAIIPPHSLPPPPLPHKDVPEEGRLVRVGNMLQIVPEAPSPAPAPTISQTPSSSLSRPVMVPPPPTPNNSVAAATAXATAAAAAVTAALQNPPEPKEAANTAVTLMRKMEEMKKQRDRERDARREQRFAEKMERQIVEKLHEPDPTPKTEENHVDENKEDQEEANEAKILQEAISSVPELDEEYFASSSPPSAPKSYKRKRQKMAAANTISGSANNSLGIDEVDEDEEWVPRSPVPLPDVSTCKPILMQPGFSGREKKKPHSESPPPPPPSGSPPIQHYSQWLTKQQTILTH 651
            MDDGNEDEVIIKSFKKKKKQKKEKKTKKSKKNSDRKDQAASPLMDEEIITDKSIGXCNIGTWEDPMKLTEISISSHCDDDVRSPSPPPSSSKSKKIHSKDPRTRSLFAVAGYGYEEDNSQSLNNSHGPRTPSPKSSSRGPRTPSPKSKSNWRPPSPRISPPREIDGGGVGSSGSPGSSRKYRRRSRSRSYDRCSSGGGXSRHSRHSRSPSHHRRSAPHRRSSRSPRRSSHRHHRSPSPISHYDANTNNPPYHLERSVADSTISDADLPGFPANLRQIYPYDEFHGLPQGHSPKRLSLDERLEKELGINVREVHPPQDFSIPPPGYPIRVPPPLVPSHPPPLILSHMIHADPAIHHHHLPPAIIPPHSLPPPPLPHKDVPEEGRLVRVGNMLQIVPEAPSPAPAPTISQTPSSSLSRPVMVPPPPTPNNSVAAATAXATAAAAAVTAALQNPPEPKEAANTAVTLMRKMEEMKKQRDRERDARREQRFAEKMERQIVEKLHEPDPTPKTEENHVDENKEDQEEANEAKILQEAISSVPELDEEYFASSSPPSAPKSYKRKRQKMAAANTISGSANNSLGIDEVDEDEEWVPRSPVPLPDVSTCKPILMQPGFSGREKKKPHSESPPPPPPSGSPPIQHYSQWLTKQQTILTH
Sbjct:    1 MDDGNEDEVIIKSFKKKKKQKKEKKTKKSKKNSDRKDQAASPLMDEEIITDKSIGXCNIGTWEDPMKLTEISISSHCDDDVRSPSPPPSSSKSKKIHSKDPRTRSLFAVAGYGYEEDNSQSLNNSHGPRTPSPKSSSRGPRTPSPKSKSNWRPPSPRISPPREIDGGGVGSSGSPGSSRKYRRRSRSRSYDRCSSGGGXSRHSRHSRSPSHHRRSAPHRRSSRSPRRSSHRHHRSPSPISHYDANTNNPPYHLERSVADSTISDADLPGFPANLRQIYPYDEFHGLPQGHSPKRLSLDERLEKELGINVREVHPPQDFSIPPPGYPIRVPPPLVPSHPPPLILSHMIHADPAIHHHHLPPAIIPPHSLPPPPLPHKDVPEEGRLVRVGNMLQIVPEAPSPAPAPTISQTPSSSLSRPVMVPPPPTPNNSVAAATAXATAAAAAVTAALQNPPEPKEAANTAVTLMRKMEEMKKQRDRERDARREQRFAEKMERQIVEKLHEPDPTPKTEENHVDENKEDQEEANEAKILQEAISSVPELDEEYFASSSPPSAPKSYKRKRQKMAAANTISGSANNSLGIDEVDEDEEWVPRSPVPLPDVSTCKPILMQPGFSGREKKKPHSESPPPPPPSGSPPIQHYSQWLTKQQTILTH 651          
BLAST of EMLSAG00000000956 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold212_size255419-snap-gene-1.34 (protein:Tk00549 transcript:maker-scaffold212_size255419-snap-gene-1.34-mRNA-1 annotation:"neurofilament")

HSP 1 Score: 126.331 bits (316), Expect = 3.084e-30
Identity = 137/398 (34.42%), Postives = 180/398 (45.23%), Query Frame = 0
Query:  174 SPG-SSRKYRRRSRSRSYDRCSSGGGXSRHSRHSRSPSHHRRSAPHRRSSRS-PRRS-SHRHHRSPSPISHYDANTNNPPYHL-------------------ERSVADSTISDADLPGFPANLRQIYPYD-EFHGLPQGHSPKRLSLDERLEKELGINVREVH-PPQ-DFSIPPPGYPIRVP-PPLVPSHPPPLILSHMIHADPAIHHHHLPPAIIPPHSLPPPPLPHKDVP-EEGRLVRVGNMLQIVPEAPSPAPAPTISQTPSSSLSRPVMVPPPPTPNNSVAAATAXATAAAAAVTAALQNPPEPKEAANTAVTLMRKMEEMKKQRDRERDARREQRFAEKMERQIVE-----KLHEPDPTPKTEENHVDEN--KEDQEEANEAKILQEAISSVP 537
            SPG   + Y RR  S  YDR     G     R  R+ S  RR  P  R  R  P R+ S RH  SPSP       T +P ++L                   ER V DSTISDA+L    A+ R I P   E    P   SPKRLSLDERLEKELGI +R+   PP+ DFS PPPGYP  +   PL+P      I +  +    A       P ++P +      +P    P E+ RL+RVGNMLQIVP                               N     +          V      P +P      A+ L RK+EEM K+++ ER  RREQR AE+++R + +        +P+   KT    + E   KE+ +EA EA++L+EA+SS+P
Sbjct:  353 SPGPRGQDYERRPPSPPYDRW----GPDSPGRQYRAASPARRFPPSPRGGRDVPSRTPSPRHRGSPSPYGRPFRRTPSPTFYLHEGTEGGVYRSRDLPYRSSERPVPDSTISDAELL---ASHRAIPPMAMEGEPFPPLESPKRLSLDERLEKELGITIRDAEGPPKIDFSRPPPGYPPAMSRAPLIPPQAAVPIPATALPQPGAPFETTSVPTLLPTN------MPSMVNPSEDNRLLRVGNMLQIVP-------------------------------NEKAVPSIPPTPPQPNIVPPPGSAPVDP------AMNLNRKIEEMTKKKEAERRMRREQRAAERLQRDVPQPNGDLAEEQPEAVKKTSGKRILETLEKEEDQEAKEAQLLKEAMSSIP 700          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000956 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000956 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592752371|gb|GAXK01202042.1|1.617e-547.44TSA: Calanus finmarchicus comp87800_c0_seq6 transc... [more]
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BLAST of EMLSAG00000000956 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000009560.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1166:7814... [more]
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BLAST of EMLSAG00000000956 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000956 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000956 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000956 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold212_size255419-snap-gene-1.343.084e-3034.42protein:Tk00549 transcript:maker-scaffold212_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1166supercontigLSalAtl2s1166:78147..81151 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1166-snap-gene-0.70
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000956 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000956EMLSAT00000000956-696803Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1166:78147..81151-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000956-683722 ID=EMLSAG00000000956-683722|Name=EMLSAG00000000956|organism=Lepeophtheirus salmonis|type=gene|length=3005bp|location=Sequence derived from alignment at LSalAtl2s1166:78147..81151- (Lepeophtheirus salmonis)
ATGGATGACGGAAATGAGGATGAAGTAATTATCAAATCCTTCAAAAAGAA GAAAAAACAAAAAAAGGAAAAGAAAACGAAGAAGTCAAAGAAGAATTCGG ATAGAAAGGATCAGGCGGCGAGTCCTTTAATGGATGAAGAAATTATTACA GACAAAAGTATTGGCTTKTGCAATATTGGGACTTGGGAAGATCCCATGAA ACTTACGGAAATCAGTATAAGCTCTCATTGTGATGATGATGTTCGTAGTC CGAGTCCCCCTCCCTCCTCTTCTAAATCTAAAAAGATACATTCAAAGGAT CCCCGAACTCGATCACTCTTTGCAGTTGCTGGCTATGGCTACGAAGAAGA CAACTCTCAAAGTTTAAATAATTCTCATGGGCCACGTACTCCTAGTCCAA AAAGTAGTAGCAGGGGTCCAAGGACACCTAGTCCTAAATCGAAAAGTAAT TGGAGACCTCCTAGTCCTCGCATTAGTCCACCACGAGAAATAGATGGTGG TGGTGTTGGCAGTAGTGGATCTCCAGGATCATCTAGGAAATACAGGAGAA GATCTCGATCTCGAAGCTATGACCGTTGTAGTAGCGGTGGAGGGRGKTCA AGACATAGTCGTCACTCCAGATCCCCTAGTCATCATCGGAGAAGTGCTCC TCATCGTAGAAGTAGTAGGTCTCCAAGACGTTCATCTCATCGTCACCACA GATCTCCATCACCCATTTCTCATTACGATGCAAATACAAATAATCCACCC TATCACTTGGAACGTAGTGTTGCAGACTCTACTATTAGTGATGCAGATCT CCCTGGATTCCCTGCTAATCTCCGTCAAATTTATCCGTACGATGAATTTC ATGGTTTGCCCCAAGGTCATTCTCCGAAGCGTCTTAGTCTAGATGAAAGA CTCGAAAAAGAATTAGGTATTAATGTGCGAGAAGTGCATCCCCCTCAAGA TTTTAGTATACCTCCTCCTGGCTACCCCATACGAGTCCCCCCTCCTCTCG TTCCTTCTCATCCYCCTCCTCTAATTCTCTCTCACATGATACATGCAGAT CCTGCAATCCATCATCACCATCTTCCTCCTGCAATAATTCCTCCTCATTC TTTACCGCCTCCCCCTCTACCTCACAAAGATGTACCTGAAGAAGGACGGC TGGTGAGGGTTGGKAATATGCTTCAAATTGTGCCCGAGGCACCATCTCCA GCMCCTGCGCCGACAATCTCTCAAACCCCATCCTCTTCCCTCTCTCGACC TGTCATGGTACCACCTCCGCCAACTCCAAATAATAGTGTGGCTGCGGCAA CGGCASSCGCYACYGCAGCAGCAGCTGCTGTTACTGCAGCTCTTCAAAAT CCACCTGAACCTAAGGAGGCCGCTAATACAGCAGTGACTCTTATGAGAAA GATGGAGGAAATGAAAAAGCAAAGGGACAGAGAAAGAGATGCCCGTAGAG AACAAAGATTTGCGGAGAAGATGGAGAGGCAAATAGTTGAGAAGTTGCAT GAACCAGATCCAACACCTAAAACGGAAGAAAACCATGTTGATGAGAATAA GGAGGATCAAGAGGAGGCGAATGAGGCAAAAATTTTGCAGGAGGCAATTT CTTCTGTTCCTGAATTGGATGAAGAATATTTTGCATCTTCTTCTCCACCT TCTGCACCTAAATCTTACAGTAAAAATAAAAAAAGCGATCGAATTCATTA TATTTCCTTAAAACCTTTTTCCAAAAAAGAGAGAAAAAGACAAAAGATGG CTGCTGCCAACACAATTTCTGGATCTGCCAACAATTCTTTAGGTATAGAT GAGGTAGATGAAGATGAGGAGTGGGTGCCAAGAAGCCCAGTACCTCTTCC AGATGTTAGTACATGCAAACCTATTCTCATGCAACCTGGATTTTCCGGCA GAGAGAAAAAAAGTAAATACTTTCACTCTWTAAAATGATGAAGTCATTCA ATAATATTGAGTAATTCAATTACCCCATATTTTACTTTTCCATTTATTTG ATTAATTATTAATATTATGTATTACTTCATCAAATTACTAACAAATATCA TATACCTGGTGAGTTAACACAAAAACAATCTTGAACAAAAATCGAGAAAA GAAGAAATATTTAGGTCAATTATAGGCCTTCTATTTAAATTTCTGGGATG AGTTGAAACAGTCAAAAATGTTTCCTATGGCATAGAACCTTCACTTTATT TTGATATGGGCCGATGCGGCCATTTCAAATATAATCTATCATTCTTTCAT TGTGACTTTAATGAATTTTGTATACTTTAAGTGCAATTTACGGAATTAAT CAGAGTAGTTTGTATATACAAATGACGATAATTATTCGTCGAGGAATACA AATGTAATCCTTCTAGCTTGCATTTGTGTTAACGAACCACATATGCACTA TGTATTTGAATATTTCATGGGCTTTAATTACTTTCATTTTAGTTTTACGA TATGCTGATGGAATTCTGCCAGGACAAGGCTCTCCAGATATTTCGGATAT GGAGTCTCCCGCTGTTACAAATTCAAACCAAGAACAAACACAAACGACGT GAGTACATATACTGAAATTCTTATAATAATATACTATTTATAGTGTTAGA TCTCGGTTGTGACTTAGTAAAATTCGCTCTAAAAAATAAAACACAAAAAC AGTCTTGATCCAGTTCTACGCGATGGTTTTTTTCCGAAAGAGTTTTTGGG AAAAAATCATATGCGATATTTTTTTACTAAAGAAAAATTAGTCTAGAAAA AAATCATTTTAAGACCGAACTGAAAATTAAATACTTTCTCGGACTGAGTC TCAACACACAAATAATTTACATCTAATAATCATATTGTTTCTTTAGATCC TCCACATCGAAGAAAAGGAAAAAATTCGATTAAAAATTATTAGTCAGAAA GAGCCTCACTCAGAGTCTCCACCGCCACCTCCCCCATCTGGTAGCCCTCC CATTCAGCATTATAGTCAATGGTTAACGAAGCAGCAGACTATCCTTACTC ATTAA
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