EMLSAG00000000956, EMLSAG00000000956-683722 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000956 vs. C. finmarchicus
Match: gi|592752371|gb|GAXK01202042.1| (TSA: Calanus finmarchicus comp87800_c0_seq6 transcribed RNA sequence) HSP 1 Score: 50.447 bits (119), Expect = 1.617e-5 Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 0 Query: 254 ERSVADSTISDADLPGFPANLRQI------YPYDEFHGLPQ----GHS--PKRLSLDERLEKELGINV-REVHPPQDF 318 +R++ DSTISDADL RQ+ Y Y +F L G+S PKRLSLDERLE+E GI + E PP DF Sbjct: 424 DRNLPDSTISDADL------ARQMPPPSLHYKYKQFGALASPAASGYSDSPKRLSLDERLEREHGIKIEHEQTPPMDF 639 HSP 2 Score: 43.8986 bits (102), Expect = 1.483e-3 Identity = 19/25 (76.00%), Postives = 23/25 (92.00%), Query Frame = 0 Query: 585 DEEWVPRSPVPLPDVSTCKPILMQP 609 DEE+VPRSPVPLPD ST KP+L++P Sbjct: 1249 DEEFVPRSPVPLPDNSTLKPVLVKP 1323
BLAST of EMLSAG00000000956 vs. L. salmonis peptides
Match: EMLSAP00000000956 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1166:78147:81151:-1 gene:EMLSAG00000000956 transcript:EMLSAT00000000956 description:"maker-LSalAtl2s1166-snap-gene-0.70") HSP 1 Score: 1297.34 bits (3356), Expect = 0.000e+0 Identity = 651/651 (100.00%), Postives = 651/651 (100.00%), Query Frame = 0 Query: 1 MDDGNEDEVIIKSFKKKKKQKKEKKTKKSKKNSDRKDQAASPLMDEEIITDKSIGXCNIGTWEDPMKLTEISISSHCDDDVRSPSPPPSSSKSKKIHSKDPRTRSLFAVAGYGYEEDNSQSLNNSHGPRTPSPKSSSRGPRTPSPKSKSNWRPPSPRISPPREIDGGGVGSSGSPGSSRKYRRRSRSRSYDRCSSGGGXSRHSRHSRSPSHHRRSAPHRRSSRSPRRSSHRHHRSPSPISHYDANTNNPPYHLERSVADSTISDADLPGFPANLRQIYPYDEFHGLPQGHSPKRLSLDERLEKELGINVREVHPPQDFSIPPPGYPIRVPPPLVPSHPPPLILSHMIHADPAIHHHHLPPAIIPPHSLPPPPLPHKDVPEEGRLVRVGNMLQIVPEAPSPAPAPTISQTPSSSLSRPVMVPPPPTPNNSVAAATAXATAAAAAVTAALQNPPEPKEAANTAVTLMRKMEEMKKQRDRERDARREQRFAEKMERQIVEKLHEPDPTPKTEENHVDENKEDQEEANEAKILQEAISSVPELDEEYFASSSPPSAPKSYKRKRQKMAAANTISGSANNSLGIDEVDEDEEWVPRSPVPLPDVSTCKPILMQPGFSGREKKKPHSESPPPPPPSGSPPIQHYSQWLTKQQTILTH 651 MDDGNEDEVIIKSFKKKKKQKKEKKTKKSKKNSDRKDQAASPLMDEEIITDKSIGXCNIGTWEDPMKLTEISISSHCDDDVRSPSPPPSSSKSKKIHSKDPRTRSLFAVAGYGYEEDNSQSLNNSHGPRTPSPKSSSRGPRTPSPKSKSNWRPPSPRISPPREIDGGGVGSSGSPGSSRKYRRRSRSRSYDRCSSGGGXSRHSRHSRSPSHHRRSAPHRRSSRSPRRSSHRHHRSPSPISHYDANTNNPPYHLERSVADSTISDADLPGFPANLRQIYPYDEFHGLPQGHSPKRLSLDERLEKELGINVREVHPPQDFSIPPPGYPIRVPPPLVPSHPPPLILSHMIHADPAIHHHHLPPAIIPPHSLPPPPLPHKDVPEEGRLVRVGNMLQIVPEAPSPAPAPTISQTPSSSLSRPVMVPPPPTPNNSVAAATAXATAAAAAVTAALQNPPEPKEAANTAVTLMRKMEEMKKQRDRERDARREQRFAEKMERQIVEKLHEPDPTPKTEENHVDENKEDQEEANEAKILQEAISSVPELDEEYFASSSPPSAPKSYKRKRQKMAAANTISGSANNSLGIDEVDEDEEWVPRSPVPLPDVSTCKPILMQPGFSGREKKKPHSESPPPPPPSGSPPIQHYSQWLTKQQTILTH Sbjct: 1 MDDGNEDEVIIKSFKKKKKQKKEKKTKKSKKNSDRKDQAASPLMDEEIITDKSIGXCNIGTWEDPMKLTEISISSHCDDDVRSPSPPPSSSKSKKIHSKDPRTRSLFAVAGYGYEEDNSQSLNNSHGPRTPSPKSSSRGPRTPSPKSKSNWRPPSPRISPPREIDGGGVGSSGSPGSSRKYRRRSRSRSYDRCSSGGGXSRHSRHSRSPSHHRRSAPHRRSSRSPRRSSHRHHRSPSPISHYDANTNNPPYHLERSVADSTISDADLPGFPANLRQIYPYDEFHGLPQGHSPKRLSLDERLEKELGINVREVHPPQDFSIPPPGYPIRVPPPLVPSHPPPLILSHMIHADPAIHHHHLPPAIIPPHSLPPPPLPHKDVPEEGRLVRVGNMLQIVPEAPSPAPAPTISQTPSSSLSRPVMVPPPPTPNNSVAAATAXATAAAAAVTAALQNPPEPKEAANTAVTLMRKMEEMKKQRDRERDARREQRFAEKMERQIVEKLHEPDPTPKTEENHVDENKEDQEEANEAKILQEAISSVPELDEEYFASSSPPSAPKSYKRKRQKMAAANTISGSANNSLGIDEVDEDEEWVPRSPVPLPDVSTCKPILMQPGFSGREKKKPHSESPPPPPPSGSPPIQHYSQWLTKQQTILTH 651
BLAST of EMLSAG00000000956 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold212_size255419-snap-gene-1.34 (protein:Tk00549 transcript:maker-scaffold212_size255419-snap-gene-1.34-mRNA-1 annotation:"neurofilament") HSP 1 Score: 126.331 bits (316), Expect = 3.084e-30 Identity = 137/398 (34.42%), Postives = 180/398 (45.23%), Query Frame = 0 Query: 174 SPG-SSRKYRRRSRSRSYDRCSSGGGXSRHSRHSRSPSHHRRSAPHRRSSRS-PRRS-SHRHHRSPSPISHYDANTNNPPYHL-------------------ERSVADSTISDADLPGFPANLRQIYPYD-EFHGLPQGHSPKRLSLDERLEKELGINVREVH-PPQ-DFSIPPPGYPIRVP-PPLVPSHPPPLILSHMIHADPAIHHHHLPPAIIPPHSLPPPPLPHKDVP-EEGRLVRVGNMLQIVPEAPSPAPAPTISQTPSSSLSRPVMVPPPPTPNNSVAAATAXATAAAAAVTAALQNPPEPKEAANTAVTLMRKMEEMKKQRDRERDARREQRFAEKMERQIVE-----KLHEPDPTPKTEENHVDEN--KEDQEEANEAKILQEAISSVP 537 SPG + Y RR S YDR G R R+ S RR P R R P R+ S RH SPSP T +P ++L ER V DSTISDA+L A+ R I P E P SPKRLSLDERLEKELGI +R+ PP+ DFS PPPGYP + PL+P I + + A P ++P + +P P E+ RL+RVGNMLQIVP N + V P +P A+ L RK+EEM K+++ ER RREQR AE+++R + + +P+ KT + E KE+ +EA EA++L+EA+SS+P Sbjct: 353 SPGPRGQDYERRPPSPPYDRW----GPDSPGRQYRAASPARRFPPSPRGGRDVPSRTPSPRHRGSPSPYGRPFRRTPSPTFYLHEGTEGGVYRSRDLPYRSSERPVPDSTISDAELL---ASHRAIPPMAMEGEPFPPLESPKRLSLDERLEKELGITIRDAEGPPKIDFSRPPPGYPPAMSRAPLIPPQAAVPIPATALPQPGAPFETTSVPTLLPTN------MPSMVNPSEDNRLLRVGNMLQIVP-------------------------------NEKAVPSIPPTPPQPNIVPPPGSAPVDP------AMNLNRKIEEMTKKKEAERRMRREQRAAERLQRDVPQPNGDLAEEQPEAVKKTSGKRILETLEKEEDQEAKEAQLLKEAMSSIP 700 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000956 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000956 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 1
BLAST of EMLSAG00000000956 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000956 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000956 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000956 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000956 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1166:78147..81151- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000956-683722 ID=EMLSAG00000000956-683722|Name=EMLSAG00000000956|organism=Lepeophtheirus salmonis|type=gene|length=3005bp|location=Sequence derived from alignment at LSalAtl2s1166:78147..81151- (Lepeophtheirus salmonis)back to top Add to Basket
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