EMLSAG00000001017, EMLSAG00000001017-683783 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001017
Unique NameEMLSAG00000001017-683783
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001017 vs. L. salmonis peptides
Match: EMLSAP00000001017 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:911970:914301:1 gene:EMLSAG00000001017 transcript:EMLSAT00000001017 description:"snap_masked-LSalAtl2s116-processed-gene-10.6")

HSP 1 Score: 149.828 bits (377), Expect = 2.380e-48
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 
Query:    1 MDLNLPSQYSTAVRSASSTPYSFLPPPPTVNSEEEALISEHHARSGSMSVVVPVLLPSHLHSTTSPAFSSIYLFFLN 77
            MDLNLPSQYSTAVRSASSTPYSFLPPPPTVNSEEEALISEHHARSGSMSVVVPVLLPSHLHSTTSPAFSSIYLFFLN
Sbjct:    1 MDLNLPSQYSTAVRSASSTPYSFLPPPPTVNSEEEALISEHHARSGSMSVVVPVLLPSHLHSTTSPAFSSIYLFFLN 77
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001017 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001017 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001017 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010172.380e-48100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s116:91197... [more]
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BLAST of EMLSAG00000001017 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001017 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001017 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001017 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s116supercontigLSalAtl2s116:911970..914301 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s116-processed-gene-10.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001017 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001017EMLSAT00000001017-696864Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s116:911970..914301+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001017-683783 ID=EMLSAG00000001017-683783|Name=EMLSAG00000001017|organism=Lepeophtheirus salmonis|type=gene|length=2332bp|location=Sequence derived from alignment at LSalAtl2s116:911970..914301+ (Lepeophtheirus salmonis)
ATGGATCTGAATCTTCCCTCACAATACTCTACTGCTGTCCGGAGTGCCTC
GTCTACTCCTTACAGCTTCCTTCCACCACCTCCGACCGTCAACTCTGAAG
AAGAAGCATTAATCTCCGAGCATCATGCTCGAAGTGCKCCTCTTCGTATG
GKCTCTTCAAGATCCGCCTCTACAAATCCATCATCTTACTATGGTGCTGG
GGATGAACTGCTGGAGGAGCCGGTTGAGGAACAGGTAGGATTAATTGAAT
TTTTATTATTTTATCCTTTAATATCTAGCAATCTATTCCTTTAAAAATAA
CCTTCGAAACTTAAAGAGTTGATAAATTTTTTGTCATAGGTTTAAAAAGT
CTTGAGAAGAAAACAGGACATAAAAATAGTTGTGAACATCTAATATATGC
AACAAATGTCAAGTTCAGTTGACGTACTGTAATGTTCTTCCCTTTTTTGA
ATATACAAAATGTCCAGAACTTGAAGGTGGTTCTTTTAAAGATTCAAAAA
ATTGCCAAAAAAAGTGATTTTTTTGGGATTTTTTTAAAACATTTATTTAC
TTCTCAAAATGGTAACCATAAGCTTTATACATTTTCAATTCGTTGTGACA
CTCCCTCGTACAGTTTGTTGTTCTAAGTCTCAGATGATTTTTCCCCCAGG
CTCTTTTAAGTTATTTTCTTACGTTGTTGGAACATTTTCATTGAGTTTCC
TCTGGACTAAACTCTCAAATTTTTGATTAGGAACAGATCAGGACTTAACC
CAGAAATAACCCAAATTTCTTTAACACCATTCTTTCCCTTTTTTGAGTGG
GGAGGTGGAGCTGAATCTTGCTGAAAAATTGCCTTTGATGAGTCAAATTA
CATTCTCATTGGGGGGGGGGGGGGCATTGGGCCAGAGATAAGAATCATGT
GCAGGTATGATATTGCCTGTTGGCTAATAATAGGCTAAACCTGAATACAT
AGTGGAAATTTCATCGTAGGAGTTGTTTCCTTATAACCTTTATTTCTTGC
CATCCGTAGATGTCCTTGAAATAGCTCAAGTAAACTCTCATCACTAAAGA
GGACACATTAACAGTCATAAACGGTCCAATTTGTATGTTTATGGTAGAAT
TGAAGTTGAGCTTTCCTTTGATCTCGGAAAATTTGGGATGCAGGCGATTT
TTGTAGGGAAAAACATTCAAAGTTTATTTCAAGTAGGTGTGTACAGATGA
CTTGAATATTGGATGCCCATTTGCAGACAATCTCGTAGCAAGTTTCCTTG
TGGATTGTCTTTGTCTGGTCAGAGATTTTGCTATCACCAGTTTGGCAACT
TTGATATGAAAAAAAATACCAATTTTAATAGTCCGGATAGGTATTTATAA
ACTATATTCAAAGTCTATGTCATGCCAATAGCCTTAGGCCTTATTTCTAA
GGAATGCTTCTTCACCATGTCTGATATTCTAGTTAAAACTCGTGATAATA
GTTAACNTTCTCAGCCCTTGTACAGTTGAGTCCGATACAATCATCAGAAA
TTATTGCATCATGAATTCTTTAAAATTGTCTAATATCTGCATCAGAAAAA
AATCAATTTTCTCATTTCTTTTTATATATTTGAAAGTAATTTGTTATATG
GCACCTTTGCACTTTTGGCATATAGTATATTTCAATTAATGAAGAAATGC
ATTCTAAACGACAAAACAAATTGTATACATTAAAAAAAAAAGAATAAAAT
CAACATCACCAACAACGTAAAAATTAAGACATTGCCTTTACTCGAGTTAG
TCTAAACTCATTGAGAGCTACTTTAGCTATTCTTGGTGAAGGGGTAACAT
TGTTGAAAGGCGCTGCAGATATAAGTGTTTGGAGTTTACATATAMCCTTC
GATGGCAAACGAATTTTTTCGTTGATTCCTTGGAAGCCATATAGAATATC
TAGTGTATCAGGTTTTCTTCCAATCTTCACTCACATTGTTCTTTTTGGTG
TCTTCTGAAAGTCCCGAAATATGTGAGAAATTGTCTTCAATGAATAGCAA
TTCCCACAATCTGAACAAACGTCATTAAAATGCCTAGTATTGATGTGTTT
ATATTGCACATTTTTATCTTTAATTATGAAGAATCGAGGTCAATCTTCCG
CCTCTTGATGATAAACTCTTCTCTCCTTCTGTAACTTAAAACCCCCTTTT
GCTCGGAATAAGCTGTGCTATTAAATTAAATTATATCCTACCTATTCTAG
GTGTTAATATAATTATATACATTCAGTTCAGGTGGGAGTATGTCTGTAGT
TGTTCCAGTACTTCTTCCATCACATCTCCACTCCACAACCTCCCCTGCCT
TTAGCTCAATATACCTTTTTTTTTTAAACTAA
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