EMLSAG00000001652, EMLSAG00000001652-684418 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001652
Unique NameEMLSAG00000001652-684418
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001652 vs. C. finmarchicus
Match: gi|592842193|gb|GAXK01115351.1| (TSA: Calanus finmarchicus comp549912_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 2.211e-2
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   18 TVIAYECENSFDCP--GTGDPDKMFCCEG-QCCDSSSLSEMSEPV 59
            T   Y C + FD P  GTG+PD++  CEG +  D S ++E   P+
Sbjct:  442 TAWKYTCRHGFDLPPDGTGNPDQILACEGSRKVDFSVITEKCRPM 576
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BLAST of EMLSAG00000001652 vs. C. finmarchicus
Match: gi|592842196|gb|GAXK01115348.1| (TSA: Calanus finmarchicus comp549912_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 2.238e-2
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   18 TVIAYECENSFDCP--GTGDPDKMFCCEG-QCCDSSSLSEMSEPV 59
            T   Y C + FD P  GTG+PD++  CEG +  D S ++E   P+
Sbjct:  682 TAWKYTCRHGFDLPPDGTGNPDQILACEGSRKVDFSVITEKCRPM 816
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BLAST of EMLSAG00000001652 vs. C. finmarchicus
Match: gi|592757194|gb|GAXK01197219.1| (TSA: Calanus finmarchicus comp2133435_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 4.631e-2
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 0 
Query:   25 ENSFDCPGTGDP-DKMFCCEGQCC 47
            +N ++CPG  DP D +FCC G CC
Sbjct:  362 KNYYECPGLEDPLDHIFCCAGSCC 433

HSP 2 Score: 27.335 bits (59), Expect = 4.051e+0
Identity = 12/32 (37.50%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:   25 ENSFDCPGTGDP-DKMFCCEGQCCDSSSLSEM 55
            ++ F+CPG  DP D   CC G CC +  ++ +
Sbjct:  158 KDYFECPGLEDPLDFTSCCGGSCCAAKEINSL 253
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BLAST of EMLSAG00000001652 vs. C. finmarchicus
Match: gi|592916424|gb|GAXK01041951.1| (TSA: Calanus finmarchicus comp754581_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 8.535e-1
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 0 
Query:   25 ENSFDCPGTGDP-DKMFCCEGQCC 47
            +  F+CPG  DP D   CC+G CC
Sbjct:  154 QEYFECPGPDDPSDHTICCDGNCC 225
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BLAST of EMLSAG00000001652 vs. C. finmarchicus
Match: gi|592916425|gb|GAXK01041950.1| (TSA: Calanus finmarchicus comp754581_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.042e+0
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 0 
Query:   25 ENSFDCPGTGDP-DKMFCCEGQCC 47
            +  F+CPG  DP D   CC+G CC
Sbjct:  154 QEYFECPGPDDPSDHTICCDGNCC 225
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BLAST of EMLSAG00000001652 vs. C. finmarchicus
Match: gi|592915544|gb|GAXK01042831.1| (TSA: Calanus finmarchicus comp1284983_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.037e+0
Identity = 13/40 (32.50%), Postives = 19/40 (47.50%), Query Frame = 0 
Query:   19 VIAYECENSFDCPGTGDPDKMFCCEGQCCDSSSLSEMSEP 58
            ++  EC     C G GD D   C   +CC    +SE+ +P
Sbjct:   50 LLPVECSQGLICTGHGDQD---CLLAKCCSRHGVSEVKQP 160
[Close]
BLAST of EMLSAG00000001652 vs. C. finmarchicus
Match: gi|592862130|gb|GAXK01095432.1| (TSA: Calanus finmarchicus comp201710_c2_seq10 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.388e+0
Identity = 11/30 (36.67%), Postives = 15/30 (50.00%), Query Frame = 0 
Query:   30 CPGTGDPDKMFCCEGQCCDSSSLSEMSEPV 59
             PG G P+ +        D  S+SE+ EPV
Sbjct:  285 APGLGSPEIIGVIRSYAIDDDSMSEIKEPV 374
[Close]
BLAST of EMLSAG00000001652 vs. C. finmarchicus
Match: gi|592916878|gb|GAXK01041497.1| (TSA: Calanus finmarchicus comp324548_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.899e+0
Identity = 12/21 (57.14%), Postives = 13/21 (61.90%), Query Frame = 0 
Query:   28 FDCPGTGDP-DKMFCCEGQCC 47
            F+CPG  DP D   CCE  CC
Sbjct:  678 FECPGPDDPLDHTICCEQNCC 740
[Close]
BLAST of EMLSAG00000001652 vs. C. finmarchicus
Match: gi|592916879|gb|GAXK01041496.1| (TSA: Calanus finmarchicus comp324548_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.918e+0
Identity = 12/21 (57.14%), Postives = 13/21 (61.90%), Query Frame = 0 
Query:   28 FDCPGTGDP-DKMFCCEGQCC 47
            F+CPG  DP D   CCE  CC
Sbjct:  678 FECPGPDDPLDHTICCEQNCC 740
[Close]
BLAST of EMLSAG00000001652 vs. L. salmonis peptides
Match: EMLSAP00000001652 (pep:novel supercontig:LSalAtl2s:LSalAtl2s128:1826439:1827568:-1 gene:EMLSAG00000001652 transcript:EMLSAT00000001652 description:"snap_masked-LSalAtl2s128-processed-gene-18.13")

HSP 1 Score: 147.902 bits (372), Expect = 1.079e-47
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 
Query:    1 MKSFVVLLLMIVSLSINTVIAYECENSFDCPGTGDPDKMFCCEGQCCDSSSLSEMSEPVAAPFRSRIKKFKR 72
            MKSFVVLLLMIVSLSINTVIAYECENSFDCPGTGDPDKMFCCEGQCCDSSSLSEMSEPVAAPFRSRIKKFKR
Sbjct:    1 MKSFVVLLLMIVSLSINTVIAYECENSFDCPGTGDPDKMFCCEGQCCDSSSLSEMSEPVAAPFRSRIKKFKR 72
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001652 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001652 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592842193|gb|GAXK01115351.1|2.211e-240.00TSA: Calanus finmarchicus comp549912_c0_seq7 trans... [more]
gi|592842196|gb|GAXK01115348.1|2.238e-240.00TSA: Calanus finmarchicus comp549912_c0_seq4 trans... [more]
gi|592757194|gb|GAXK01197219.1|4.631e-254.17TSA: Calanus finmarchicus comp2133435_c0_seq1 tran... [more]
gi|592916424|gb|GAXK01041951.1|8.535e-150.00TSA: Calanus finmarchicus comp754581_c0_seq2 trans... [more]
gi|592916425|gb|GAXK01041950.1|1.042e+050.00TSA: Calanus finmarchicus comp754581_c0_seq1 trans... [more]
gi|592915544|gb|GAXK01042831.1|3.037e+032.50TSA: Calanus finmarchicus comp1284983_c0_seq1 tran... [more]
gi|592862130|gb|GAXK01095432.1|3.388e+036.67TSA: Calanus finmarchicus comp201710_c2_seq10 tran... [more]
gi|592916878|gb|GAXK01041497.1|5.899e+057.14TSA: Calanus finmarchicus comp324548_c0_seq2 trans... [more]
gi|592916879|gb|GAXK01041496.1|5.918e+057.14TSA: Calanus finmarchicus comp324548_c0_seq1 trans... [more]
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BLAST of EMLSAG00000001652 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000016521.079e-47100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s128:18264... [more]
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BLAST of EMLSAG00000001652 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001652 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001652 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001652 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s128supercontigLSalAtl2s128:1826439..1827568 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s128-processed-gene-18.13
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001652 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001652EMLSAT00000001652-697499Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s128:1826439..1827568-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001652-684418 ID=EMLSAG00000001652-684418|Name=EMLSAG00000001652|organism=Lepeophtheirus salmonis|type=gene|length=1130bp|location=Sequence derived from alignment at LSalAtl2s128:1826439..1827568- (Lepeophtheirus salmonis)
ATGAAGTCCTTTGTGGTTCTTCTTCTTATGATAGTCTCTCTATCCATCAA
CACAGGTAATTAATTAAATAATTACTAAGATTCAAGGGGTATATCTTCCT
ACTCCTAGTCTGTCATTTAGTGACGGACTCCTACTGCCCTGAATACGCGG
TGTTTAACTTTACTCTTTCATACTGTCATTTAAATGATTATTGACTATCT
ATTTAATTATTAGTTATAGCCTATGAATGCGAAAACTCGTTTGACTGTCC
TGGAACCGGTGATCCGGATAAAATGTTTTGCTGCGAAGGTCAATGCTGCG
ATTCGTCTTCCCTGTCTGAAATGTAAGTATGAATCACGTTCTTACACATT
AATTCCTTAAAAGGTGAAGCCTTAGAAATTTATACAATATTAATATGATA
ATTTATTCACTTAAAAATAACTTATCATAAGTAATGAAATCGAATGAACT
AGGACAAGGCAATTGGAAAGGAAATGAATTAGTCTATATAGTCAGAGGAA
AATAAATAGCCATTATTCCTTTAAATCCGTAAATCACTTTCTTCTGGTTC
AATCAAGTCATGGAAATTCAAATTTAATGTAATGTACTTGAATTATTTTT
ATAATGAAAAATGATGATGTAAATACTACATGATAGTCTTTTGACTATAT
AAAGGATGTGCATATTACGATAAGAATTTTCCCTTGCAAATCAACATGGG
AGTTATGCCTATCATATTAAAATCGCTATAAATATGTATCTACTTACTTA
TTTGTAATATATCTTTCCAATGAGCTTTTTTTTAAATTCCAAAACAGTCA
TTTATAATTTGTGTTAGATTTTATGAGTTCTTTGCCGTGTTGTATTTGGG
AGTTACTTTTTCATTATACTACTATACAGACAGTTTTGATGACTCAATTT
TTTTGTAATTATTATTTTTTTATGATTTTAGAGAGTTTTTTTAATTTTGT
TATTAGAAGACCTTGTTTTAAATGCACTTTGATTGGCGCTATCAGATCTC
ATACATCTAAGAAACATGGATTGCTACATTTATATTTAAAAAAATCATAA
ATAATATCAATAAAAATTTCCATAGGTCAGAACCTGTCGCAGCACCGTTT
CGATCTAGGATTAAAAAGTTTAAACGGTGA
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