EMLSAG00000001789, EMLSAG00000001789-684555 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001789
Unique NameEMLSAG00000001789-684555
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001789 vs. C. finmarchicus
Match: gi|592814230|gb|GAXK01140338.1| (TSA: Calanus finmarchicus comp445828_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.965 bits (84), Expect = 1.758e-1
Identity = 46/179 (25.70%), Postives = 81/179 (45.25%), Query Frame = 0 
Query:  113 PSCHELKRMWKIARKMQLRDTTRDNRPFFYNTVTSPKLD-LQDEDDLNKEESNALLFTSPKKMKTDRRRLSVIPSRSSTESIQNDDDEDENKSRVYGKISQYQPTTKVHDPTNDIYNILRSRKERQINHLRSLRMRANQNEIPNYGNIRYYDAPSKSSPSSFMDKLRSKLRDDKGLPXL 290
            PSC EL++MW+IAR++       +  P   +  ++ + D  + E  LNK++      +S +   +     S +  + S E + +D +        YG I +Y P+  V  P + +Y++L     R++N   + R   +     N G I +     K+ P    DK+R+ LR  K  P L
Sbjct: 2282 PSCSELRKMWRIARRIHHHAIQTNEIPQKLHPFSNFESDRFRTERRLNKDKGINKDTSSSRDSSSLDTSSSSVAQKGSKE-VASDAN--------YGTI-RYAPSDPVKRPGSTVYDVL-----RKLNPDIAYRSEKDPGAW-NTGIIEFEPETEKTRP---FDKVRNMLRKTKNQPPL 2761
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BLAST of EMLSAG00000001789 vs. L. salmonis peptides
Match: EMLSAP00000001789 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1303:71276:76094:1 gene:EMLSAG00000001789 transcript:EMLSAT00000001789 description:"snap_masked-LSalAtl2s1303-processed-gene-0.6")

HSP 1 Score: 890.182 bits (2299), Expect = 0.000e+0
Identity = 444/444 (100.00%), Postives = 444/444 (100.00%), Query Frame = 0 
Query:    1 MLIIPLYLLLLHSTFVVSRSAFYFSNRSPYLRRSGSSGSNNYYVTPSPASTPTPPSPSPLLSNNIIYSFSPLDEETMKKXGHRNTRDTEWPAESEEDRRLLEKFSNPNFKEEPSCHELKRMWKIARKMQLRDTTRDNRPFFYNTVTSPKLDLQDEDDLNKEESNALLFTSPKKMKTDRRRLSVIPSRSSTESIQNDDDEDENKSRVYGKISQYQPTTKVHDPTNDIYNILRSRKERQINHLRSLRMRANQNEIPNYGNIRYYDAPSKSSPSSFMDKLRSKLRDDKGLPXLSSSSSNDERSSNEFDGFITQEEPSITQSPRPFEKLRLQLLSGDKENDDDRMVAFDSIKNKLLNKSIKQRMIDQSSRGIRRKNSKKRRKNLIQLMKIREAELRREYLRNLYERITDEEEKRRRNRKNRRNGRHKTMRRMQDLRKSNEGVIKYEEE 444
            MLIIPLYLLLLHSTFVVSRSAFYFSNRSPYLRRSGSSGSNNYYVTPSPASTPTPPSPSPLLSNNIIYSFSPLDEETMKKXGHRNTRDTEWPAESEEDRRLLEKFSNPNFKEEPSCHELKRMWKIARKMQLRDTTRDNRPFFYNTVTSPKLDLQDEDDLNKEESNALLFTSPKKMKTDRRRLSVIPSRSSTESIQNDDDEDENKSRVYGKISQYQPTTKVHDPTNDIYNILRSRKERQINHLRSLRMRANQNEIPNYGNIRYYDAPSKSSPSSFMDKLRSKLRDDKGLPXLSSSSSNDERSSNEFDGFITQEEPSITQSPRPFEKLRLQLLSGDKENDDDRMVAFDSIKNKLLNKSIKQRMIDQSSRGIRRKNSKKRRKNLIQLMKIREAELRREYLRNLYERITDEEEKRRRNRKNRRNGRHKTMRRMQDLRKSNEGVIKYEEE
Sbjct:    1 MLIIPLYLLLLHSTFVVSRSAFYFSNRSPYLRRSGSSGSNNYYVTPSPASTPTPPSPSPLLSNNIIYSFSPLDEETMKKXGHRNTRDTEWPAESEEDRRLLEKFSNPNFKEEPSCHELKRMWKIARKMQLRDTTRDNRPFFYNTVTSPKLDLQDEDDLNKEESNALLFTSPKKMKTDRRRLSVIPSRSSTESIQNDDDEDENKSRVYGKISQYQPTTKVHDPTNDIYNILRSRKERQINHLRSLRMRANQNEIPNYGNIRYYDAPSKSSPSSFMDKLRSKLRDDKGLPXLSSSSSNDERSSNEFDGFITQEEPSITQSPRPFEKLRLQLLSGDKENDDDRMVAFDSIKNKLLNKSIKQRMIDQSSRGIRRKNSKKRRKNLIQLMKIREAELRREYLRNLYERITDEEEKRRRNRKNRRNGRHKTMRRMQDLRKSNEGVIKYEEE 444
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001789 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001789 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592814230|gb|GAXK01140338.1|1.758e-125.70TSA: Calanus finmarchicus comp445828_c0_seq1 trans... [more]
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BLAST of EMLSAG00000001789 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000017890.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1303:7127... [more]
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BLAST of EMLSAG00000001789 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001789 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001789 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001789 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1303supercontigLSalAtl2s1303:71276..76094 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1303-processed-gene-0.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001789 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001789EMLSAT00000001789-697636Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1303:71276..76094+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001789-684555 ID=EMLSAG00000001789-684555|Name=EMLSAG00000001789|organism=Lepeophtheirus salmonis|type=gene|length=4819bp|location=Sequence derived from alignment at LSalAtl2s1303:71276..76094+ (Lepeophtheirus salmonis)
GGGCAACAGACCAAGATCCCTTAACACATAGTCTCCACATCAACACAAAC
TCTTATTAGAACTCTCTCTCAACATTATATACTTATTTTGTTTTGTTACT
AATATTCCTATTCACACGGCAAAAGCAGGCGTTACAGAAACAAATAGCGT
TACCTTTATGTATTCTTTGATTATATGGATAGAGACAGTGTTATTTTATT
CAAACCGGAGCATTTCTCATCATCTACGTCTAGAATATGTGAAACCAAAA
CTCTGGACTAGGAATTGAAAGTATACATATCCTTCAGTATATTAGCGAAG
TAACCATCAAACTCAATCAATTTTATCACAAGGAGAACTACATGCAAACA
AAGAGTGACTACTGATTTCTTGTACTTGTTACATCAATGTTGTTACTTTC
ATAAACATTAACCAAGAAAAGCAAAAAAAAAAACAAAAAAAACAAATCAT
TGCAATGTCAAGAACTCTAATCATAAACCCAATTTGTACTTGATTCTGCC
ATATCAAACTTAACATTTCATTCATATCATAGACTCATGTTTTGTTCATC
TCTATCTCGAAATATTTTGATCTGGCTTAGAAATTATTGACTTTCAAGGT
ATGTAACTAATGTGTTATGCTCTTTTGTAAATAACCAACCCCCCCCCCCC
CCCCACCTCCCATAAAATAATATTTATCTTTCTTTATTATGTGCACTTTA
AAAGATTTCACATTATTGCTTCTTTTGTCATTAAAAACTTACTTAAAAGT
TTCATTCACCCTCTAAAATATGTTTCTACAACATAATAATAATATTTCAT
AAAACTAACTTTTTCATAGTCTTGTTATAATGTACTTAATGAATAATTTT
TCCAGAACAATAAATATATTTCATATATCTAGGGTTACACTATGAAATTT
TTTGTGCGGGGGAGCAATTGAATATAAGTACTACACAGGGTAGATGAAAT
AGGCTAAAAAGTATATATTTGAAATCGTTTAATTTGTTTACATTGTTTTT
ATATTTAATTTGTGTTGTAAATGATTCAGACATTTAAAGTAGGGAAACCC
TTTTTATAAAAGAAATTGAAGCAATTGATATTTTTTTTTAAATTGAGGAT
TTTCAAAAAAGGGTATGTATACATATGTTAGAATAATATACATAAAGATA
TTAATACTTTCATAAAACCTATAAAAAATTTATTTGTTTCTTCTATGAAA
TTCTGAAATTTAATTAAAATCATTTACATAAGAACAAGTTCAATTTATAT
TTTATCCATTTCTGTCGTCGCTTGAAATGAAGAGAAACAAAAGAATACAT
TCAAGCATATAATTGCGTAGCTTTGTAGGTACAGTATTACCTTTCCGATA
GTGTATAGATTGCATATATTAGTTAATTCGCCATTACTTTCCTAGGCCCT
TTGCAAACACTTATTTCTAACAATTTGTGTGTATTATTCAACTCAACCCT
TTTTTCTCCTCCTTCTTTACCATAAATTTCTGATTTATCTTAATTATCCA
TTGAATATTTTCCCCTGGATTCCTCTAAAATATCCTAAAAGTTACAATAA
CTTCATTATTCAATGTTTTTGTGTGCTAAAAAATGTTAATATTGCATTAA
AATTGACTTGTACTGATGAAAATAAAAGAGATACAAAGTAGAAAATGCTC
CATTATACATTGATATGAAGTATTTTGCAAGGAAAAATCAAATCAGAAAG
AGTCATAGTAGGACTTTTTGTGCAGGTTTTTAAAGACCCAGGAAAGTATT
CACATTTGAATATGAACGGAAAGTAAGTAAGGGATTTGTGCCTTTATTGA
AAACTGATATTCAACGCTCATTTATAACTTTACCTAATAATTTAGGTAGA
AATATTATAATTCAAATATATTTCAAACGATGTAGAATTAATTCATTTTT
CTTTGGTTTATGGACATAAATGGTTTTGTATACATATATATTAGAGATGT
AGAAACCCCCAATTGCGCTTTTGTTTGAATCCTAATTATAGATACGTCAT
CATTTTTTGTTATCCTTCTTTCTTTCAGATATAAACCAAAGCTTTCAAAT
CCTTGCCTTATACATACATATATGTAAGACTCAAATCATAATCAACTACA
AACTGATCTCGACCTATTCCATTACAAATTATCTTTATTTTTCTTCCTTG
TGCTTTTATTTTTGGATCCTATAATTTTGTACATTGCTAAAGGAGAAAAT
ATGTTGATTATTCCATTATATTTATTGCTGTTACATTCCACTTTTGTTGT
GAGTAGAAGTGCATTCTACTTCAGTAATCGTTCACCTTATCTAAGAAGAA
GTGGGTCATCTGGTAGCAACAACTACTATGTGACACCCTCGCCAGCTTCA
ACACCTACACCCCCTTCTCCATCTCCCTTGCTTTCAAATAACATCATATA
CTCCTTTTCACCTCTTGATGAAGAGACTATGAAAAAGTKCGGCCACAGAA
ACACTCGAGACACTGAATGGCCTGCAGAATCAGAAGAGGACAGAAGGCTA
CTAGAGAAATTTAGTAACCCTAATTTTAAGGAAGAGCCCTCTTGCCATGA
GCTGAAGCGAATGTGGAAAATAGCGCGCAAAATGCAATTAAGAGACACCA
CAAGGGATAATCGGCCTTTCTTCTACAATACAGTCACCTCTCCTAAATTG
GATTTGCAAGACGAGGATGACCTCAACAAAGAGGAGTCCAATGCTCTTCT
ATTTACATCCCCTAAGAAAATGAAAACGGATCGACGGCGTTTATCCGTGA
TCCCCTCGAGGTCTTCTACGGAGTCAATTCAAAATGACGATGATGAGGAC
GAGAACAAATCTCGGGTGTATGGCAAAATATCTCAATATCAACCTACGAC
AAAAGTACATGACCCAACAAACGATATCTACAATATACTACGTTCTCGAA
AAGAGCGCCAAATAAATCATTTAAGATCCTTGCGTATGAGAGCGAACCAA
AATGAAATTCCAAACTATGGAAATATTCGTTATTACGATGCTCCTTCAAA
ATCCTCTCCTTCTTCTTTTATGGACAAACTTCGATCCAAACTAAGAGATG
ACAAAGGATTGCCCWCTCTATCGTCTTCTTCGTCAAATGATGAAAGATCT
TCAAATGAATTTGATGGATTTATTACTCAAGAAGAGCCTTCAATCACGCA
GTCTCCTCGACCCTTCGAGAAACTAAGGTTACAATTACTCTCTGGAGACA
AAGAAAATGATGATGACAGAATGGTTGCCTTTGATAGCATCAAAAATAAG
TTATTGAATAAAAGCATCAAACAACGCATGATTGATCAATCCAGTAGAGG
AATCCGACGTAAAAATTCAAAGAAACGTCGTAAAAATGTAAGAAAGTTTT
TTTGTCTTTTTTCCTTTATTTCTCAGAAAAATATTCTCACAAAAGTATGC
AATTAAAATTCTAACTCAGGCTTAAAATTAACAGCAGTCAAGCATTAAAA
TGACTTAGAGCAGCATAGTTTGTGCTTTATTTATGATTGTATGAACATTC
ATTCAAAAACTCTACGACACATTGACTCTCTCTCTCTATATATATATACA
TTATTAATGTAGTACTTATCAAATACTACGCTATTTCTGAAGGAATAATA
AGTTTATATATATGCATTAAAAAATGAGGAATTACTACGAAATTTGTATG
TAAAAAGTATATATATATTTAAAAGACATTTTTGAATAACTGAAAAATTA
TATTATTCTTTTACTATTAAATGAGGGGAATAACTAACAGAAAACTAAAA
TGAATAAAATATGAATGAGGTCATACAGGGGTTACTAGAATCTATATTAT
CAAATAGCATGTAATTAATTTGTATGTTTTTCAACAATTTTCAATTAGTT
TTCATAATAATGTAAAATTAAATCTTTTTACACGTAAACTGCATTCACAG
TGTAATGACTATAAATAATTCATTGTAACTTTTAAGATTATATTTAAATA
GCAAAGTGTTGGATAATTACATTAAATGTGGAGAGAAAAAAACGGAGATA
ACTTTTATTTTAGTCCTCCAAAAGGAAAAATAAATATGGGGGGGGGGGGC
AATCCACCCACGCAGGCTTTTTATTCATTTATATTAAAGATTAGTTTTTA
AAAGTTAACTCTCTTGTCTTTTTTCTAGCAAAAGAAAGCTTTTTATATGT
ATATAAGTGTATAATAATCATCACAGGTTTGTCACATTAAATGAATAGAG
AAGGATCCGGTTTGAATGAAACATTATCATCTTTAAAAAATCATTTCACT
TCTATTAATATATCAATTTTTATTTCTTTTATTCACTAACACCCTAACTT
AACTAATACCACTAAAAAAAAAGCTAATACAATTAATGAAGATAAGGGAG
GCAGAGTTGAGACGAGAATACTTGAGAAATCTCTATGAGAGGATTACGGA
TGAAGAAGAGGTAATTCAATTTTTTCTACAAAATGAAGTGATTGTCCTTC
CTTTTTTTTCTATCCAGTGACACTCTTTTTTAATTTTTTACTATAGAAAA
GAAGGAGAAATAGGAAAAACCGTAGAAATGGTCGACATAAAACTATGAGA
CGGATGCAGGACTTGAGAAAATCTAATGAGGGTGTTATCAAATATGAAGA
AGAATGAATTATCATCCATATAACGAACAATCCGTGATTATCATCGTTTT
TATCCATGAAGCTTTCAATAACCAAACAAAACAAAAGAAAAAAAAAGAAG
AATTTCGTGCTTTCAAGACTTCAAACGACTTGGCTTTCACGGAGTGACTT
GACAAAAACACACATACCTTTATAAATATTCATTTTTCATAATAAATTAT
TCTACTTTTTTTTTTTTTT
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