EMLSAG00000002496, EMLSAG00000002496-685262 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002496
Unique NameEMLSAG00000002496-685262
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002496 vs. L. salmonis peptides
Match: EMLSAP00000002496 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1489:51061:51821:1 gene:EMLSAG00000002496 transcript:EMLSAT00000002496 description:"maker-LSalAtl2s1489-augustus-gene-0.7")

HSP 1 Score: 145.206 bits (365), Expect = 2.887e-45
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 
Query:    1 MISMKAIFVIVALSALFLESNGQIKTTPAQGVKTTVVLKETTTTTTTTSTSTTTPETTTTXTTTTTTTTTTTTTTTTTTTTXTXTXTTTTTTTTTTTTTTTTTTTTTTTTTXTXTTTT 118
            MISMKAIFVIVALSALFLESNGQIKTTPAQGVKTTVVLKETTTTTTTTSTSTTTPETTTTXTTTTTTTTTTTTTTTTTTTTXTXTXTTTTTTTTTTTTTTTTTTTTTTTTTXTXTTTT
Sbjct:    1 MISMKAIFVIVALSALFLESNGQIKTTPAQGVKTTVVLKETTTTTTTTSTSTTTPETTTTXTTTTTTTTTTTTTTTTTTTTXTXTXTTTTTTTTTTTTTTTTTTTTTTTTTXTXTTTT 118
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BLAST of EMLSAG00000002496 vs. L. salmonis peptides
Match: EMLSAP00000008603 (pep:novel supercontig:LSalAtl2s:LSalAtl2s52:1021650:1022127:1 gene:EMLSAG00000008603 transcript:EMLSAT00000008603 description:"maker-LSalAtl2s52-augustus-gene-9.40")

HSP 1 Score: 81.2629 bits (199), Expect = 1.355e-20
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0 
Query:    1 MISMKAIFVIVALSALFLESNGQIKTTPAQGVKTTVVLKE 40
            M SMK +F+IVALSALFLESNGQIKTTPAQGVKTTVVLKE
Sbjct:    1 MRSMKVVFLIVALSALFLESNGQIKTTPAQGVKTTVVLKE 40
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BLAST of EMLSAG00000002496 vs. L. salmonis peptides
Match: EMLSAP00000002497 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1489:95104:96543:1 gene:EMLSAG00000002497 transcript:EMLSAT00000002497 description:"maker-LSalAtl2s1489-augustus-gene-0.6")

HSP 1 Score: 69.707 bits (169), Expect = 2.601e-15
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0 
Query:    1 MISMKAIFVIVALSALFLESNGQIKTTPAQGVKTTVVLKE 40
            M SMK IF+I+ALSALFLESNGQ K TPAQ +KTT  LKE
Sbjct:   14 MRSMKVIFLIMALSALFLESNGQTKATPAQSIKTTQPLKE 53
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002496 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002496 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002496 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000024962.887e-45100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1489:5106... [more]
EMLSAP000000086031.355e-2090.00pep:novel supercontig:LSalAtl2s:LSalAtl2s52:102165... [more]
EMLSAP000000024972.601e-1575.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1489:9510... [more]
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BLAST of EMLSAG00000002496 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002496 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002496 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002496 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1489supercontigLSalAtl2s1489:51061..51821 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1489-augustus-gene-0.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002496 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002496EMLSAT00000002496-698343Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1489:51061..51821+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002496-685262 ID=EMLSAG00000002496-685262|Name=EMLSAG00000002496|organism=Lepeophtheirus salmonis|type=gene|length=761bp|location=Sequence derived from alignment at LSalAtl2s1489:51061..51821+ (Lepeophtheirus salmonis)
AAAATATCTAACAGGCTTAAAACTATAGCCTAGTCTTGAGTATATTTTCA
GCCTTCTTTTATAGAATATCATTATCCTTTTTACAAGCTAAAATAGATTA
ACTATTTCATCTATTGAACTAAATGCATGAGTTAATGATCCAGTCGTAAA
AATGCTCTTAGAAGCTATATTAAGAATTATTTGTTAGCATTTGAGGAGCT
AAATAATAAAAAAAACACACAGATGAAAACGGTAAGTTTATGCACTATAT
AAAGATCTATTAGTTCCACAATTTGACATTACTTACGAGTTATCAGTTCT
GGAAGCATGATATCCATGAAAGCTATCTTCGTGATTGTGGCTCTCTCAGC
TTTGTTCCTTGAGAGCAATGGACAAAGTATGTACATAAAAGGGTTATATC
ATTGAAATTCAGGATATATGCAAATCCTGTTAAGTAGAATTGAAAACAAT
ATAACTAACTCTTTTCCATATTAACAGTCAAAACAACACCAGCACAGGGC
GTGAAAACAACTGTGGTTCTAAAAGAAACTACTACAACTACTACTACAAC
GTCCACTTCGACGACAACYCCCGAGACAACAACAACAMCCACCACAACGA
CCACAACAACAACCACCACCACAACAACTACTACAACAACAACCACCACT
MCCACGMCTACGMCTACCACAACGACAACTACTACTACGACAACAACTAC
TACTACAACGACCACAACTACTACGACAACAACAACCACGMCAACCMCTA
CGACAACAACA
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