EMLSAG00000002869, EMLSAG00000002869-685635 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002869
Unique NameEMLSAG00000002869-685635
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002869 vs. C. finmarchicus
Match: gi|592753949|gb|GAXK01200464.1| (TSA: Calanus finmarchicus comp364601_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.998e-1
Identity = 18/45 (40.00%), Postives = 30/45 (66.67%), Query Frame = 0 
Query:   13 YPQLLLTVL-EGMR-LNFSTRLSALMSNVSSILNYARTQSWKEIY 55
            YP ++L ++ EG+R +  +  L+ALMS+++SI N A T    +IY
Sbjct: 1281 YPAIVLGIMPEGLRGVMIAVMLAALMSDLTSIFNSASTLFTMDIY 1415
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BLAST of EMLSAG00000002869 vs. C. finmarchicus
Match: gi|592753948|gb|GAXK01200465.1| (TSA: Calanus finmarchicus comp364601_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 2.012e-1
Identity = 18/45 (40.00%), Postives = 30/45 (66.67%), Query Frame = 0 
Query:   13 YPQLLLTVL-EGMR-LNFSTRLSALMSNVSSILNYARTQSWKEIY 55
            YP ++L ++ EG+R +  +  L+ALMS+++SI N A T    +IY
Sbjct: 1213 YPAIVLGIMPEGLRGVMIAVMLAALMSDLTSIFNSASTLFTMDIY 1347
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BLAST of EMLSAG00000002869 vs. C. finmarchicus
Match: gi|592753950|gb|GAXK01200463.1| (TSA: Calanus finmarchicus comp364601_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 2.018e-1
Identity = 18/45 (40.00%), Postives = 30/45 (66.67%), Query Frame = 0 
Query:   13 YPQLLLTVL-EGMR-LNFSTRLSALMSNVSSILNYARTQSWKEIY 55
            YP ++L ++ EG+R +  +  L+ALMS+++SI N A T    +IY
Sbjct: 1306 YPAIVLGIMPEGLRGVMIAVMLAALMSDLTSIFNSASTLFTMDIY 1440
[Close]
BLAST of EMLSAG00000002869 vs. C. finmarchicus
Match: gi|592753945|gb|GAXK01200468.1| (TSA: Calanus finmarchicus comp364601_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.837e-1
Identity = 18/45 (40.00%), Postives = 30/45 (66.67%), Query Frame = 0 
Query:   13 YPQLLLTVL-EGMR-LNFSTRLSALMSNVSSILNYARTQSWKEIY 55
            YP ++L ++ EG+R +  +  L+ALMS+++SI N A T    +IY
Sbjct: 1213 YPAIVLGIMPEGLRGVMIAVMLAALMSDLTSIFNSASTLFTMDIY 1347
[Close]
BLAST of EMLSAG00000002869 vs. C. finmarchicus
Match: gi|592753947|gb|GAXK01200466.1| (TSA: Calanus finmarchicus comp364601_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.857e-1
Identity = 18/45 (40.00%), Postives = 30/45 (66.67%), Query Frame = 0 
Query:   13 YPQLLLTVL-EGMR-LNFSTRLSALMSNVSSILNYARTQSWKEIY 55
            YP ++L ++ EG+R +  +  L+ALMS+++SI N A T    +IY
Sbjct: 1306 YPAIVLGIMPEGLRGVMIAVMLAALMSDLTSIFNSASTLFTMDIY 1440
[Close]
BLAST of EMLSAG00000002869 vs. C. finmarchicus
Match: gi|592753946|gb|GAXK01200467.1| (TSA: Calanus finmarchicus comp364601_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.877e-1
Identity = 18/45 (40.00%), Postives = 30/45 (66.67%), Query Frame = 0 
Query:   13 YPQLLLTVL-EGMR-LNFSTRLSALMSNVSSILNYARTQSWKEIY 55
            YP ++L ++ EG+R +  +  L+ALMS+++SI N A T    +IY
Sbjct: 1281 YPAIVLGIMPEGLRGVMIAVMLAALMSDLTSIFNSASTLFTMDIY 1415
[Close]
BLAST of EMLSAG00000002869 vs. C. finmarchicus
Match: gi|592823932|gb|GAXK01130636.1| (TSA: Calanus finmarchicus comp178754_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.283e+0
Identity = 19/49 (38.78%), Postives = 28/49 (57.14%), Query Frame = 0 
Query:    7 IAVKKKYPQLLLTVLEGMRLNFSTRLSALMSNVSSILNYARTQSWKEIY 55
            IA  K   +L+ T   GM L  +  L+ALMS+++SI N + T    +IY
Sbjct: 1106 IAFVKLVTELMPTGARGMML--AVMLAALMSSLTSIFNSSSTIFTMDIY 1246
[Close]
BLAST of EMLSAG00000002869 vs. L. salmonis peptides
Match: EMLSAP00000002869 (pep:novel supercontig:LSalAtl2s:LSalAtl2s165:328863:329931:1 gene:EMLSAG00000002869 transcript:EMLSAT00000002869 description:"snap_masked-LSalAtl2s165-processed-gene-3.2")

HSP 1 Score: 123.25 bits (308), Expect = 2.163e-38
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 
Query:    1 MNLQVYIAVKKKYPQLLLTVLEGMRLNFSTRLSALMSNVSSILNYARTQSWKEIYGCYNR 60
            MNLQVYIAVKKKYPQLLLTVLEGMRLNFSTRLSALMSNVSSILNYARTQSWKEIYGCYNR
Sbjct:    1 MNLQVYIAVKKKYPQLLLTVLEGMRLNFSTRLSALMSNVSSILNYARTQSWKEIYGCYNR 60
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002869 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002869 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592753949|gb|GAXK01200464.1|1.998e-140.00TSA: Calanus finmarchicus comp364601_c0_seq2 trans... [more]
gi|592753948|gb|GAXK01200465.1|2.012e-140.00TSA: Calanus finmarchicus comp364601_c0_seq3 trans... [more]
gi|592753950|gb|GAXK01200463.1|2.018e-140.00TSA: Calanus finmarchicus comp364601_c0_seq1 trans... [more]
gi|592753945|gb|GAXK01200468.1|2.837e-140.00TSA: Calanus finmarchicus comp364601_c0_seq6 trans... [more]
gi|592753947|gb|GAXK01200466.1|2.857e-140.00TSA: Calanus finmarchicus comp364601_c0_seq4 trans... [more]
gi|592753946|gb|GAXK01200467.1|2.877e-140.00TSA: Calanus finmarchicus comp364601_c0_seq5 trans... [more]
gi|592823932|gb|GAXK01130636.1|2.283e+038.78TSA: Calanus finmarchicus comp178754_c0_seq1 trans... [more]
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BLAST of EMLSAG00000002869 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000028692.163e-38100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s165:32886... [more]
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BLAST of EMLSAG00000002869 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002869 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002869 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002869 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s165supercontigLSalAtl2s165:328863..329931 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s165-processed-gene-3.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002869 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002869EMLSAT00000002869-698716Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s165:328863..329931+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002869-685635 ID=EMLSAG00000002869-685635|Name=EMLSAG00000002869|organism=Lepeophtheirus salmonis|type=gene|length=1069bp|location=Sequence derived from alignment at LSalAtl2s165:328863..329931+ (Lepeophtheirus salmonis)
TAAGATTCAAACGTTCTTAAAACTACGATCAACAATAATGTGCCAGCTAC
ATAAAAAATAATAATAGGCTACACAGTTTTCCTTTGAGCGCACTCTTTTT
AAAGTAAGAATGTTTCCGGTAAGAACTCTTCTTTCTTTTTCCCGCTACAC
TGTTTCCTGTGAACAACTTCTTAACTTTTATTCTGAATAATCCTGGATAT
CTGTTCATATCGTTCACATCCTTCACTGGAGAAGAATCTTGCCACGTTAT
TTCACATCCTAGTGCAATATTATAACACACTATGATTGAACCTTTCCTTG
ATAAGTTGAATAGATACCCTGATACTAATGGTAAGAGTAAGCCTTGTTAT
ATTTCCCATCGTCGATTAATCTTATCGTTATTTTATATTGGTATGGATTG
TTAAACGACTGGGTAGAGCATTAATTGTCTTTCTTATATCCTTCTCGTTT
CTCCATTCCGTGGGATCTGTAGAGTGGAAACGGTCAGATACACTTAAATT
ACTCCATGTGTTATTTAGTTTCTATTGTTTGCATGTGGTTAATTCATTTT
TCTTTATTTACAGCACAAGGATGACTGACGAGTGGGATACCTAGGTCGAA
ACCAGACAGGCAATTGCCATTCCAGAGCCAGCTGAGATACCTGATGTTAA
GTGGGATTGTGGCGAGGTCTATGTTTCCCAAATGAATCTTCAGGTAAATA
GAATAATTATTCATTAATCCATCCAATCCTCTTTCTATGATGCCTTATAA
TTAAACTTAGTCTATGTGACACTGACGACTACTTATATCACCCATCGTTT
CTGAGATTCCAATTATAGGCCATTGAATGCAAATTGCATCTTGTATTTTC
AGTCATGTTTAATGTTCTTTCTTCTTACATTCATAGGTATACATTGCCGT
GAAGAAAAAGTACCCACAGCTACTTCTCACTGTTCTGGAAGGTATGCGGC
TTAACTTTTCTACAAGGCTCAGTGCCCTAATGTCGAACGTCTCGTCAATT
CTTAATTATGCACGGACGCAATCATGGAAAGAAATTTATGGTTGTTACAA
TCGTTAAACATGCCATTAG
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