EMLSAG00000002990, EMLSAG00000002990-685756 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002990
Unique NameEMLSAG00000002990-685756
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002990 vs. C. finmarchicus
Match: gi|592818812|gb|GAXK01135756.1| (TSA: Calanus finmarchicus comp152296_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.5798 bits (83), Expect = 2.973e-2
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 0 
Query:   34 SQHEEEEDSWPTAPPLDYFDSIKGYEM 60
            S+H E+ED +PTAPP++Y   ++GYEM
Sbjct:  516 SRHSEDED-FPTAPPVEYLGFVQGYEM 593
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BLAST of EMLSAG00000002990 vs. C. finmarchicus
Match: gi|592864305|gb|GAXK01093257.1| (TSA: Calanus finmarchicus comp721468_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 3.082e-2
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 0 
Query:   34 SQHEEEEDSWPTAPPLDYFDSIKGYEM 60
            S+H E+ED  PTAPP DY   ++GYEM
Sbjct:  193 SRHSEDED-CPTAPPADYLGYVQGYEM 270
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BLAST of EMLSAG00000002990 vs. C. finmarchicus
Match: gi|592837241|gb|GAXK01120303.1| (TSA: Calanus finmarchicus comp986275_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 4.067e-1
Identity = 16/40 (40.00%), Postives = 25/40 (62.50%), Query Frame = 0 
Query:   24 SSDSDAGSENSQHEE---EEDSWPTAPPLDYFDSIKGYEM 60
            S +  AG E ++ E    +E+ W +APP DY + ++GYEM
Sbjct:  989 SGEETAGGETTETESKHSDEEEWHSAPPDDYLEHVEGYEM 1108
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BLAST of EMLSAG00000002990 vs. C. finmarchicus
Match: gi|592818811|gb|GAXK01135757.1| (TSA: Calanus finmarchicus comp152296_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 5.801e-1
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 0 
Query:   35 QHEEEEDSWPTAPPLDYFDSIKGYEM 60
            +H +EED W  APP DY + ++GYEM
Sbjct:  347 KHSDEED-WYAAPPDDYLEHVEGYEM 421
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BLAST of EMLSAG00000002990 vs. C. finmarchicus
Match: gi|592818810|gb|GAXK01135758.1| (TSA: Calanus finmarchicus comp152296_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 6.643e-1
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 0 
Query:   35 QHEEEEDSWPTAPPLDYFDSIKGYEM 60
            +H +EED W  APP DY + ++GYEM
Sbjct:  347 KHSDEED-WYAAPPDDYLEHVEGYEM 421
[Close]
BLAST of EMLSAG00000002990 vs. L. salmonis peptides
Match: EMLSAP00000002990 (pep:novel supercontig:LSalAtl2s:LSalAtl2s170:441946:442434:1 gene:EMLSAG00000002990 transcript:EMLSAT00000002990 description:"augustus_masked-LSalAtl2s170-processed-gene-4.1")

HSP 1 Score: 320.857 bits (821), Expect = 4.942e-113
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 
Query:    1 MVFGDEGTGGDEDSTSKKYEKKFSSDSDAGSENSQHEEEEDSWPTAPPLDYFDSIKGYEMVSFDAVSVPPPPSVLPPAFSLLNHNNKDTNLDPSSSPPAPPAHQPXGDAYPTGQDVSTKVGLIHLSDFETRLTENQARSALLSHIASSXXXLWKNRGKKYDH 162
            MVFGDEGTGGDEDSTSKKYEKKFSSDSDAGSENSQHEEEEDSWPTAPPLDYFDSIKGYEMVSFDAVSVPPPPSVLPPAFSLLNHNNKDTNLDPSSSPPAPPAHQPXGDAYPTGQDVSTKVGLIHLSDFETRLTENQARSALLSHIASSXXXLWKNRGKKYDH
Sbjct:    1 MVFGDEGTGGDEDSTSKKYEKKFSSDSDAGSENSQHEEEEDSWPTAPPLDYFDSIKGYEMVSFDAVSVPPPPSVLPPAFSLLNHNNKDTNLDPSSSPPAPPAHQPXGDAYPTGQDVSTKVGLIHLSDFETRLTENQARSALLSHIASSXXXLWKNRGKKYDH 162
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002990 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002990 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592818812|gb|GAXK01135756.1|2.973e-255.56TSA: Calanus finmarchicus comp152296_c0_seq1 trans... [more]
gi|592864305|gb|GAXK01093257.1|3.082e-259.26TSA: Calanus finmarchicus comp721468_c1_seq1 trans... [more]
gi|592837241|gb|GAXK01120303.1|4.067e-140.00TSA: Calanus finmarchicus comp986275_c1_seq1 trans... [more]
gi|592818811|gb|GAXK01135757.1|5.801e-153.85TSA: Calanus finmarchicus comp152296_c0_seq2 trans... [more]
gi|592818810|gb|GAXK01135758.1|6.643e-153.85TSA: Calanus finmarchicus comp152296_c0_seq3 trans... [more]
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BLAST of EMLSAG00000002990 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000029904.942e-113100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s170:44194... [more]
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BLAST of EMLSAG00000002990 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002990 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002990 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002990 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s170supercontigLSalAtl2s170:441946..442434 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s170-processed-gene-4.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002990 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002990EMLSAT00000002990-698837Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s170:441946..442434+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002990-685756 ID=EMLSAG00000002990-685756|Name=EMLSAG00000002990|organism=Lepeophtheirus salmonis|type=gene|length=489bp|location=Sequence derived from alignment at LSalAtl2s170:441946..442434+ (Lepeophtheirus salmonis)
ATGGTTTTCGGTGATGAGGGAACTGGTGGGGACGAGGATTCGACATCCAA
AAAGTATGAAAAAAAGTTTTCCTCGGACTCTGATGCAGGCTCAGAGAACT
CACAACATGAAGAGGAGGAGGACTCCTGGCCTACTGCACCTCCCCTTGAC
TACTTTGATTCCATTAAAGGCTACGAAATGGTGTCATTTGACGCCGTGAG
TGTTCCACCTCCTCCCTCAGTACTTCCTCCAGCATTTTCTCTCCTCAACC
ACAATAACAAAGACACTAACTTAGATCCGTCCTCTTCACCMCCAGCACCT
CCAGCACACCAACCAKCAGGGGACGCCTATCCCACTGGACAAGATGTATC
GACAAAAGTGGGTCTCATCCACTTATCCGATTTTGAAACTCGTCTCACTG
AGAATCAAGCACGCTCTGCACTCCTTTCGCATATTGCCTCCTCCCNNNNN
NTGCTATGGAAAAACCGCGGCAAAAAATATGATCATTAA
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