EMLSAG00000002994, EMLSAG00000002994-685760 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002994
Unique NameEMLSAG00000002994-685760
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000002994 vs. GO
Match: - (symbol:sep15 "15 kDa selenoprotein" species:8022 "Oncorhynchus mykiss" [GO:0005788 "endoplasmic reticulum lumen" evidence=ISS] [GO:0008430 "selenium binding" evidence=ISS] InterPro:IPR012336 SUPFAM:SSF52833 GO:GO:0005788 GO:GO:0008430 InterPro:IPR014912 Pfam:PF08806 CTD:9403 HOVERGEN:HBG108472 EMBL:AY255833 RefSeq:NP_001117926.1 UniGene:Omy.133786 GeneID:100136176 Uniprot:Q6X4M2)

HSP 1 Score: 44.669 bits (104), Expect = 3.611e-5
Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = 0 
Query:  116 KQYPGLTVKYVRGADPVIKLLDEDDDVIEMP 146
            K + GL +KYVRGADP++KLLD++ ++ E P
Sbjct:  102 KMFKGLQIKYVRGADPILKLLDDNGNIAEEP 132
[Close]
BLAST of EMLSAG00000002994 vs. C. finmarchicus
Match: gi|592778818|gb|GAXK01175750.1| (TSA: Calanus finmarchicus comp3975_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 53.5286 bits (127), Expect = 2.127e-8
Identity = 33/107 (30.84%), Postives = 44/107 (41.12%), Query Frame = 0 
Query:   87 NCSSLGFDKNVVPCSSCSDMVQFSLREVS------------------------------------------------KQYPGLTVKYVRGADPVIKLLDEDDDVIEM 145
             C   GF+   + CSSC D+ QF L +V+                                                 +YPGLT+KYVRGADP+IKLLDE+++V E 
Sbjct:  359 QCLEKGFNSAKLLCSSCEDLKQFDLGKVAGDCTKCCTSDGGSAALENTKYEKAILEVCG*RLGAYPQVAAFIKSERPSRYPGLTIKYVRGADPIIKLLDEEEEVAET 679
[Close]
BLAST of EMLSAG00000002994 vs. C. finmarchicus
Match: gi|592778819|gb|GAXK01175749.1| (TSA: Calanus finmarchicus comp3975_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 53.1434 bits (126), Expect = 2.142e-8
Identity = 33/107 (30.84%), Postives = 44/107 (41.12%), Query Frame = 0 
Query:   87 NCSSLGFDKNVVPCSSCSDMVQFSLREVS------------------------------------------------KQYPGLTVKYVRGADPVIKLLDEDDDVIEM 145
             C   GF+   + CSSC D+ QF L +V+                                                 +YPGLT+KYVRGADP+IKLLDE+++V E 
Sbjct:  125 QCLEKGFNSAKLLCSSCEDLNQFDLGKVAGDCTKCCTSDGGSAALENTKYEKAILEVCG*RLGAYPQVAAFIKSERPSRYPGLTIKYVRGADPIIKLLDEEEEVAET 445
[Close]
BLAST of EMLSAG00000002994 vs. C. finmarchicus
Match: gi|592778817|gb|GAXK01175751.1| (TSA: Calanus finmarchicus comp3975_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 51.9878 bits (123), Expect = 4.889e-8
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0 
Query:  106 MVQFSLREVSKQYPGLTVKYVRGADPVIKLLDEDDDVIEM 145
            +  F   E   +YPGLT+KYVRGADP+IKLLDE+++V E 
Sbjct:  359 VAAFIKSERPSRYPGLTIKYVRGADPIIKLLDEEEEVAET 478
[Close]
BLAST of EMLSAG00000002994 vs. C. finmarchicus
Match: gi|592800946|gb|GAXK01153622.1| (TSA: Calanus finmarchicus comp7733282_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.162e+0
Identity = 18/50 (36.00%), Postives = 26/50 (52.00%), Query Frame = 0 
Query:   89 SSLGFDKNVVPCSSCSDMVQFSLREVSKQYPGLTVKYVRGADPVIKLLDE 138
            S    + NVVPC SC   VQ  +  +S+ YP L+  Y+R    +  +L E
Sbjct:   98 SICSINGNVVPCPSC---VQHVICHLSEGYPKLSNHYIREFPNMYCMLKE 238
[Close]
BLAST of EMLSAG00000002994 vs. C. finmarchicus
Match: gi|592943070|gb|GAXK01015483.1| (TSA: Calanus finmarchicus comp3848910_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 7.403e+0
Identity = 16/35 (45.71%), Postives = 21/35 (60.00%), Query Frame = 0 
Query:   23 LSIENYSAHYYRR---SSPLLIHVSGDLWILLVFV 54
            LS+ N   H  +R   S PLL H++GDL  L +FV
Sbjct:  119 LSLRNQRVHICQRMHFSPPLLSHLAGDLNFLTLFV 223
[Close]
BLAST of EMLSAG00000002994 vs. L. salmonis peptides
Match: EMLSAP00000002994 (pep:novel supercontig:LSalAtl2s:LSalAtl2s170:519420:521673:1 gene:EMLSAG00000002994 transcript:EMLSAT00000002994 description:"maker-LSalAtl2s170-snap-gene-5.22")

HSP 1 Score: 298.901 bits (764), Expect = 7.373e-105
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0 
Query:    1 MVNRWRHPSLIVGNFFLFFIYLLSIENYSAHYYRRSSPLLIHVSGDLWILLVFVIGLKVQFLWKMDVLLFVNVLFLFWTHGSAEENNCSSLGFDKNVVPCSSCSDMVQFSLREVSKQYPGLTVKYVRGADPVIKLLDEDDDVIEMP 146
            MVNRWRHPSLIVGNFFLFFIYLLSIENYSAHYYRRSSPLLIHVSGDLWILLVFVIGLKVQFLWKMDVLLFVNVLFLFWTHGSAEENNCSSLGFDKNVVPCSSCSDMVQFSLREVSKQYPGLTVKYVRGADPVIKLLDEDDDVIEMP
Sbjct:    1 MVNRWRHPSLIVGNFFLFFIYLLSIENYSAHYYRRSSPLLIHVSGDLWILLVFVIGLKVQFLWKMDVLLFVNVLFLFWTHGSAEENNCSSLGFDKNVVPCSSCSDMVQFSLREVSKQYPGLTVKYVRGADPVIKLLDEDDDVIEMP 146
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002994 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-3.611e-554.84symbol:sep15 "15 kDa selenoprotein" species:8022 "... [more]
back to top
BLAST of EMLSAG00000002994 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592778818|gb|GAXK01175750.1|2.127e-830.84TSA: Calanus finmarchicus comp3975_c3_seq1 transcr... [more]
gi|592778819|gb|GAXK01175749.1|2.142e-830.84TSA: Calanus finmarchicus comp3975_c2_seq1 transcr... [more]
gi|592778817|gb|GAXK01175751.1|4.889e-857.50TSA: Calanus finmarchicus comp3975_c3_seq2 transcr... [more]
gi|592800946|gb|GAXK01153622.1|1.162e+036.00TSA: Calanus finmarchicus comp7733282_c0_seq1 tran... [more]
gi|592943070|gb|GAXK01015483.1|7.403e+045.71TSA: Calanus finmarchicus comp3848910_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000002994 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000029947.373e-105100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s170:51942... [more]
back to top
BLAST of EMLSAG00000002994 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002994 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002994 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002994 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s170supercontigLSalAtl2s170:519420..521673 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s170-snap-gene-5.22
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002994 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002994EMLSAT00000002994-698841Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s170:519420..521673+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002994-685760 ID=EMLSAG00000002994-685760|Name=EMLSAG00000002994|organism=Lepeophtheirus salmonis|type=gene|length=2254bp|location=Sequence derived from alignment at LSalAtl2s170:519420..521673+ (Lepeophtheirus salmonis)
AAAAAATTAAGCCCCCTTCCTTCTAAAAAAAAAACCCTGCGGACGACTCT
GCCCTTAGAAGATCCCTTTAAAATTATATTAACAATGACATTTTTTGAAT
TTTTGTACGATAAGTTTGAATTATGGTTAATAGATGGCGCCATCCGTCGT
TGATCGTCGGCAATTTCTTCTTGTTTTTTATATATTTGCTGTCGATTGAA
AACTATTCAGCTCATTACTATAGGAGATCCTCACCGCTACTAATACACGT
CAGCGGAGATCTTTGGATTCTGTTAGTTTTTGTTATAGGCTTAAAGGTCC
AATTCCTTTGGAAAATGGACGTTTTACTCTTTGTAAACGTTCTTTTCCTT
TTTTGGGTAATGTATTTAACATATTTTTTAAATATATAAGTGACTTTTTG
ATTTGACATAATATATTACGAATTTAATTTACAAATACTGATATAAATGG
AATGCGTTTACTTTTGCAGACACACGGGAGCGCGGAGGAAAACAATTGTT
CGTCCCTTGGATTCGATAAAAACGTCGTTCCTTGCTCATCTTGCTCTGAT
ATGGTGCAATTCTCTCTAAGAGAAGTCTCAAAACAGTGTTTCAAATGCTG
CAAAGACGAAGAAAACGCGCTGGAGGAGACAAAATATCCTSGAGCCATTT
TGGAAGTGTGTGGGTGACGTTTGGGTTAGTTTTCTAAATTTATGTGATGT
GTACAATTAATCATTTTTTCCCCTTATTATTCCATTAGGAGCGTATCCTC
AAGTTCAGGTGAATATTTCCGACCTTACGATCATTTTTCTTTCTTAGGGA
GTTTTGTAAATAGATTGTTCGATAGATATAATGGTTTGATTAGCTCAAAG
CGTTTTCATATATTACAGACAGTACTAATACTCCGTTTAGTCAGGGTTTC
TCACTAAAATACCCGGGTTTTTTTTTTCATTTCAAGACCCCCATAATACG
AAAATCTACTAATGTTAGTTAGTAGCACTGACTCACGTCTCAGGATAGTC
CTGTATACCCACGGAACTCATTACTTTGACTATTTGGGCTATTGCTGTAT
TATTTCCAATATAGATATGTGGTGCATCAATATAAAAACAATCTTGAACA
AAATCAGGAAAAGGAGAAAATCCCAATTTATTGTATTATTTCACTAAGAC
ATACTACCCAATTTTTCAAAGGAATATTTGAGTCAATTATAGGCTTATTA
TTCAAATTTGTAGACTTATATTGCCCAAGATATGGCCTCTTTCAGCCATA
AAAGCTATTAATTTCTTATTCTTTTATTGTGGCAATGTGTAATTTGCAAC
GAGTACAAAGGAATAATTTGTTGATATAAATTGATGATAAATCATGATGG
AATACAAATGTAATCCATTATCAATTTTTATAACTATCATTCTAGCTTTC
TTTTATGTTGACGGGCCACATATATACGATACTATCAGTGTTAATGTTGT
CAGCTATGGCTTGATGGAATGTATTYGTCAACTAATTKTTTTAGCATAAC
GATTATGAGRSGAGACGATAGGTATTTTTTTTTTTTTTTGTTTCATCTGA
CTAAAAGAATCTTTTCGGTTCTTCACAAAATAAAAACGGGGCGAAATTAA
CACTCAGGACCGTAATCGCTAGGGGTTATGATCCATCCTGATATTTTTTT
CAGTAGTAATAGTTATCAGCCAATTAATAGGTTAATCCAGTCTCGTCCCG
TCCAGTAAGAAAACCGGTACTACAGGACTTGACACTGGATACCATGAATA
TATTCCCAAGAGTAATGTCTTTAATTTTTTTTCTGATATGTAGGCCTTTA
TCAAAAGCGACCGAACTTCGAGGTAAATACCACAATTTTCTTTTTTTATT
TACATGCTTCTATCGCATTTTCACTTTATTCTAGATACCCTGGACTCACC
GTCAAATATGTCAGGGGTGCAGATCCAGTTATCAAACTTCTTGATGAAGA
TGATGATGTTATTGAGGTAGGAACTCCTTCACTTTTTCCTGCATTTTCCC
CCCCTATCCTACCTATCTTATNNTCATCACCCACTTTATTTTTTATATAT
TTTCTCATCGATTTGATACTATWWTTTTTTTTTTTTTTTTGGTCAGATAA
TGATATYTGAATGGATGTYTTTTWTTTTTWTATATTNAAATCGTGAATGA
ATTCTCCTTWTTCCTTGGTATCTATTGTTTTATGAAGATTTTAGCTGGGA
AACGTTGAATGACGCCGCTAATTATTGGATGTTTTGTACTTATAGATGCC
ATAA
back to top
Add to Basket