EMLSAG00000003244, EMLSAG00000003244-686010 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003244
Unique NameEMLSAG00000003244-686010
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
RNAi_AH 3422+5667+6012 female
  1. PreAdult2
 -Missing-
-Missing- 		08.11.2016 - 09:43
13.12.2016 - 09:44
Homology
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BLAST of EMLSAG00000003244 vs. C. finmarchicus
Match: gi|592797765|gb|GAXK01156803.1| (TSA: Calanus finmarchicus comp2220285_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 1.342e-6
Identity = 30/90 (33.33%), Postives = 52/90 (57.78%), Query Frame = 0 
Query:   12 LLILSLDRSESLRCFQCSQVGKYK---CPSNSDSRTTFESIENQYIDVGSSSEIGCSLQIGYDEEIYYQGTMSLKDCTEKKSI-YLTRLM 97
            L++L L     L+CF C++    K   CP +S S TT+ S   +Y DVGSS+   C++++G + E Y+QG +    C +  ++ ++T L+
Sbjct:  150 LMVLLLPSGGCLKCFTCTKHSGSKEIGCPLSSSSLTTWSSNTEKYYDVGSSANFSCAVRVGGNGETYHQGGIPRTSCNDSDTVSHITALV 419
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BLAST of EMLSAG00000003244 vs. C. finmarchicus
Match: gi|592889717|gb|GAXK01068658.1| (TSA: Calanus finmarchicus comp3837403_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 6.808e-6
Identity = 27/89 (30.34%), Postives = 44/89 (49.44%), Query Frame = 0 
Query:   20 SESLRCFQCS--QVGKYKCPSNSDSRTTFESIENQYIDVGSS--SEIGCSLQIGYDEEIYYQGTMSLKDCTEKKSIYLTRLMFNLIHLF 104
            S++  CFQCS  Q     CPS++D   ++ +   +Y    SS    + CS+ +G    IY+QG +S   C  K   Y+ +L  N+   +
Sbjct:  252 SQTTGCFQCSELQTAVIACPSSTDDPISWHTSPGKYDQFNSSVADPLYCSIIVGESGRIYHQGALSWAQCENKG--YVEKLRRNIARKY 512
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BLAST of EMLSAG00000003244 vs. C. finmarchicus
Match: gi|592938871|gb|GAXK01019682.1| (TSA: Calanus finmarchicus comp4267181_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.898e-2
Identity = 21/71 (29.58%), Postives = 39/71 (54.93%), Query Frame = 0 
Query:   23 LRCFQCS--QVGKYKCPSNSDSRTTFESIENQYIDVGSSS--EIGCSLQIGYDEEIYYQGTMSLKDCTEKK 89
            + CFQCS  Q     CP ++   +++ S  +++  VG+S    + CS+ +G    IY+QG +    CT+++
Sbjct:  318 IGCFQCSELQTRVVACPDSNSISSSWMSNSSKFTTVGTSDSKPVRCSIVVGKSGRIYHQGAVETDRCTDEE 530
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BLAST of EMLSAG00000003244 vs. C. finmarchicus
Match: gi|592756196|gb|GAXK01198217.1| (TSA: Calanus finmarchicus comp339299_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.786e+0
Identity = 10/28 (35.71%), Postives = 21/28 (75.00%), Query Frame = 0 
Query:    4 LRYITSVLLLILSLDRSESLRCFQCSQV 31
            LR + S+++ +++ D+S SL C++CS +
Sbjct:  450 LRGVFSIVIFLVTWDQSTSLSCYKCSSM 533
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BLAST of EMLSAG00000003244 vs. C. finmarchicus
Match: gi|592883384|gb|GAXK01074991.1| (TSA: Calanus finmarchicus comp275725_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.953e+0
Identity = 14/52 (26.92%), Postives = 31/52 (59.62%), Query Frame = 0 
Query:   49 IENQYIDVGSSSEIGCSLQIGYDEEI-----YYQGTMSLKDCTEKKSIYLTR 95
            I++Q+I++  ++++    Q+G D++I      YQ  + +K C +   +Y+TR
Sbjct:  707 IKSQFIEILQANKLSAGAQLGNDQKIGNSLTKYQNMILMKTCGKYYQVYITR 862
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BLAST of EMLSAG00000003244 vs. C. finmarchicus
Match: gi|592901432|gb|GAXK01056943.1| (TSA: Calanus finmarchicus comp766286_c1_seq37 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 7.205e+0
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 0 
Query:   38 SNSDSRTTFESIENQYIDVGSSSEI 62
            + SD  TTF S+ N ++ +GSSS I
Sbjct:   66 TRSDEATTFSSLMNLFLRIGSSSHI 140
[Close]
BLAST of EMLSAG00000003244 vs. C. finmarchicus
Match: gi|592901435|gb|GAXK01056940.1| (TSA: Calanus finmarchicus comp766286_c1_seq34 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 8.440e+0
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 0 
Query:   38 SNSDSRTTFESIENQYIDVGSSSEI 62
            + SD  TTF S+ N ++ +GSSS I
Sbjct:   66 TRSDEATTFSSLMNLFLRIGSSSHI 140
[Close]
BLAST of EMLSAG00000003244 vs. C. finmarchicus
Match: gi|592884750|gb|GAXK01073625.1| (TSA: Calanus finmarchicus comp2745224_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 9.680e+0
Identity = 23/72 (31.94%), Postives = 34/72 (47.22%), Query Frame = 0 
Query:   56 VGSSSEIGCSLQIGYDEEIYYQGTMSLKDC--TEKKSIYLTRLMFNLIHLFIIKTSSKKF-RNMSHFLNIKK 124
            +G   EI C  Q G ++ + Y G+ + K+    E  SI   RL   L     I  S  +F +N+  FLN K+
Sbjct:  313 LG*IQEINCWDQFGKEDMLSYMGS*TEKETC*KESFSIKFARLKIKLPEWVYISLSILRFIKNLQSFLNPKQ 528
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BLAST of EMLSAG00000003244 vs. L. salmonis peptides
Match: EMLSAP00000003244 (pep:novel supercontig:LSalAtl2s:LSalAtl2s178:250815:253405:1 gene:EMLSAG00000003244 transcript:EMLSAT00000003244 description:"maker-LSalAtl2s178-snap-gene-2.37")

HSP 1 Score: 252.677 bits (644), Expect = 2.837e-87
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 
Query:    1 MAALRYITSVLLLILSLDRSESLRCFQCSQVGKYKCPSNSDSRTTFESIENQYIDVGSSSEIGCSLQIGYDEEIYYQGTMSLKDCTEKKSIYLTRLMFNLIHLFIIKTSSKKFRNMSHFLNIKK 124
            MAALRYITSVLLLILSLDRSESLRCFQCSQVGKYKCPSNSDSRTTFESIENQYIDVGSSSEIGCSLQIGYDEEIYYQGTMSLKDCTEKKSIYLTRLMFNLIHLFIIKTSSKKFRNMSHFLNIKK
Sbjct:    1 MAALRYITSVLLLILSLDRSESLRCFQCSQVGKYKCPSNSDSRTTFESIENQYIDVGSSSEIGCSLQIGYDEEIYYQGTMSLKDCTEKKSIYLTRLMFNLIHLFIIKTSSKKFRNMSHFLNIKK 124
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003244 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003244 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592797765|gb|GAXK01156803.1|1.342e-633.33TSA: Calanus finmarchicus comp2220285_c0_seq1 tran... [more]
gi|592889717|gb|GAXK01068658.1|6.808e-630.34TSA: Calanus finmarchicus comp3837403_c0_seq1 tran... [more]
gi|592938871|gb|GAXK01019682.1|1.898e-229.58TSA: Calanus finmarchicus comp4267181_c0_seq1 tran... [more]
gi|592756196|gb|GAXK01198217.1|3.786e+035.71TSA: Calanus finmarchicus comp339299_c2_seq1 trans... [more]
gi|592883384|gb|GAXK01074991.1|3.953e+026.92TSA: Calanus finmarchicus comp275725_c0_seq1 trans... [more]
gi|592901432|gb|GAXK01056943.1|7.205e+048.00TSA: Calanus finmarchicus comp766286_c1_seq37 tran... [more]
gi|592901435|gb|GAXK01056940.1|8.440e+048.00TSA: Calanus finmarchicus comp766286_c1_seq34 tran... [more]
gi|592884750|gb|GAXK01073625.1|9.680e+031.94TSA: Calanus finmarchicus comp2745224_c0_seq1 tran... [more]
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BLAST of EMLSAG00000003244 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000032442.837e-87100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s178:25081... [more]
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BLAST of EMLSAG00000003244 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003244 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003244 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003244 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s178supercontigLSalAtl2s178:250815..253405 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s178-snap-gene-2.37
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003244 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003244EMLSAT00000003244-699091Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s178:250815..253405+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003244-686010 ID=EMLSAG00000003244-686010|Name=EMLSAG00000003244|organism=Lepeophtheirus salmonis|type=gene|length=2591bp|location=Sequence derived from alignment at LSalAtl2s178:250815..253405+ (Lepeophtheirus salmonis)
CTCAAGAGGAAAAAATCCCACTGAACATATCAAATATATATTCTTAGGCA
TATAACTACTCAATCCCAGTATTGCCAAGAGTTTCATTAGTTACGAAGGC
TAACCAATGGCTGCTTTGAGATATATAACATCAGTTCTACTCCTAATTCT
ATCATTAGACCGAAGTGAGTCTCTTCGATGCTTTCAATGCTCCCAAGTGG
GAAAATACAAGTGCCCTTCAAATTCTGATTCCCGTACGACATTTGAATCC
ATTGAGAATCAGTATATCGATGTAGGAAGTAGTTCAGAAATTGGTTGCTC
ACTTCAAATAGGCTATGATGAAGAAATTTATTATCAAGGTACAATGTCTC
TCAAGGATTGTACAGAGAAAAAGAGTATTTATCTTACAAGGGTAGGTTAA
CTCAGAATTATTTGATCGACTAAATAAATTTTATATGATTTGCTAGGTAA
AGAACTTTACTTGTTGTTTTGGGTGTGATGGTTGCAACTGGGATTTAAAT
ACTGCATTCAGTAGTAAATGCTCAGGTAAGTGGTGAAATATATAGGATCT
ATGATAATAATGTCAGGCACGTCCGCAGTATTAAATCTATATAGTTTTTT
TAAGAGGGTTGTGGCTTGGTTTTTGGAATTTTTTTAGGAAAAAATTAAAA
AATCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTTTATGAACAATTTAAAATATTGATTTTTTTGGAAAACAATTTGATA
AATCCGCATCTTTTTAGAAAAAGTTCAATATTTTGGGAAAAAAATTTCAA
AAATCTACAGCTATAGACAAAAAATTATTTTTTTTGGGATAAAAACACTC
AAATATTAAATACAAAAAAAAAAAAAAAAATTAAATTTTTGCAGAAAAWA
AATCCGAATATTAAATTTTCTAGCAAAATAAATTTTTTATAACCCCTCCA
GCCCACCCCCTGCAGACGCCTCTAATATAAAAATGTACTCTATTCCTTTT
TTAGGAACACCTAAAACGGAGTCCAATAACAAGGATACCGACAAAAATAA
TATCAAGAAAAATACTGGTAATTTGTCGTCGACGACGTGCGAAGTGGATA
KTACAGGATTCGATTACAAWCTAGCTAGTTTGATTCTCTTGATTTCAACA
ATTATTCTTTTACTCGTCGTTGTGGTTCTTTCGTGCATTTTATTTAATCG
TACCTGTTGCTTAGAGTCTCGACCTGAGAGCCCAACCGACAACCTAGCTA
GAAACAATATTGAACCTTCAAATTTGTCACATTATACAAGGAAACATGAT
TCCTATGAATGAGGGGGGTGTGGTCCGTACTTGCTTACTATCATTTTGTA
GTAAGCACTTCAGTACATATGAACTTTGTCAACACAAAAGCAATCTTGAA
CGATAAAGAAGAAAACGAGTAATTCGAAATTCCCAATTTATTGTTTTACT
TACTAAATATGTAATTGTCCTTTTTTCGGTCACTTATGGGCATTATTATA
ATTTGTGGGATGAGTTAGGATATCTATACAAGGGCATCGACAGGGGCTGT
AGCCTCCCAATATTAAGGATTTTTGGTTTTTTATTAGAAATTATTTTGTC
ATTTGGACAAATTATGCATCAAAGCAAACAATTTAATATTTGAAGTTTTT
TTCTAAAAAATTTAATTTTTTCTGAATAACTGTGGATTTTTTATTTCTTT
TTCAAAATTTGACATTGAAAATTTTATTTTTGAATTTTTTTTCCAAAAAG
TTTAATTTTTTAAAGTATCTATGGACTTTTGATTTTTTTTTTCAAAAAAT
TCATTATTTAAGTTTTGAAAAAATTAATTTTCAAATTTTTGCCCAAAAAA
TTTATTTTCTTGCGAGTAACTATGAATTTTTGATTTGTTTTTTTTTCAAA
AAATTTATAAATCCAATCCCCACACAAAATATAATCCTGCAAACGCCCTT
GATTAACTTTAATCTGTAGCTTTCATTCGATATATGTGACTTTTTAGTTC
CGATATGGTATGTCAAATATAATCTATTTTTTCTATAACCGATCGATAAT
GTTTACTGTATTTAAGAGAAATTGGCGGGGGMTTCAAATGATTTATCAAA
ACAATTTATTAATATAAATGTGAGATACTTAGATTCAAAATAAAAATCCG
TTATGCATGTCCACTTTTTAGAAAAATCATCCTGGCTTGCTTTTATGTTG
ATTGCCGTTTTTAAAAATATTTCATGGAACATAATTTAAAAAAAACTTAA
TGAATATTTACGTTCATCTAAAAATAAGATAATATGTTCATTAATAATTT
TTCAAAGTCTTTTGTTTTGAGCAAAAAGTGTCTTGTGTTTCCCAGACAAC
ACACTCGATATTGTTTTTTTTAATAACACTCCGACTCTCATTAAATATTT
ATATATTGCTTAATAGTAACCAAGTGTTTTTCTTCTTTTTTATTCTTATA
GCTTATGTTTAATTTGATTCATTTGTTTATAATAAAAACCTCATCGAAGA
AATTTAGAAATATGAGTCATTTCTTGAACATCAAAAAATAA
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