EMLSAG00000003251, EMLSAG00000003251-686017 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003251 vs. C. finmarchicus
Match: gi|592782888|gb|GAXK01171680.1| (TSA: Calanus finmarchicus comp62983_c0_seq1 transcribed RNA sequence) HSP 1 Score: 81.2629 bits (199), Expect = 3.850e-16 Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 0 Query: 206 SQAMYGFGYVGPFYLELEEARXDCGLSDFDNALREYAYVTDFXXX------XXXXXXXXXXXDPHLLTYYVIKMKHALKRSIYCITSRKGSNQEAVITNSLIDLYAKLATERLSLT 315 +QA +G+GY GPF L+L +A CG+ DF+ + EY+++T T G +G +D P L YY+ + LK ++CITS+ GS+ EA +LID Y K+ ERL LT Sbjct: 370 AQASWGYGYWGPFLLDLNDADPGCGVEDFNRVVSEYSFITSLHQTYGNDISQGGYASGQADDRPELRAYYLGEFGRKLKLELHCITSQAGSSSEASKVVTLIDKYVKMGQERLELT 717
BLAST of EMLSAG00000003251 vs. C. finmarchicus
Match: gi|592815968|gb|GAXK01138600.1| (TSA: Calanus finmarchicus comp103607_c3_seq1 transcribed RNA sequence) HSP 1 Score: 50.8322 bits (120), Expect = 3.929e-6 Identity = 27/106 (25.47%), Postives = 50/106 (47.17%), Query Frame = 0 Query: 210 YGFGYVGPFYLELEEARXDCGLSDFDNALREYAYVTDFXXXXXXXXXXXXXXDPHLLTYYVIKMKHALKRSIYCITSRKGSNQEAVITNSLIDLYAKLATERLSLT 315 +G+GY ++L +EEA CGL D DN Y ++ + P ++ Y+V + + L +++C+ + +E + +D++ LA RL LT Sbjct: 1561 WGYGYTMTYFLFMEEADPGCGLMDLDNVYSRYQRLSSL-----EVLLSTGQVKPAMVKYFVAEWRRELGVALHCLL----NTEEGLRLGDTMDMFVNLANSRLDLT 1851
BLAST of EMLSAG00000003251 vs. C. finmarchicus
Match: gi|592836961|gb|GAXK01120583.1| (TSA: Calanus finmarchicus comp162312_c0_seq1 transcribed RNA sequence) HSP 1 Score: 49.6766 bits (117), Expect = 5.529e-6 Identity = 48/168 (28.57%), Postives = 82/168 (48.81%), Query Frame = 0 Query: 41 ASERLDNQISYLIQRLPGLISTARDKINGAQSGEELRFKVYGVTVILASFKEIVADFLISDR---NIINFGGSDTIYTXXXXXXXXXXXXXXSIWA--VGPYSDLPCGPSDFKQLINEYGLQNGVVPYLNGYDNPLSLSTRVCEFEILAYMKLNCVLSGENDHIEAAE 203 A ++LD Q YL+ + GLI A I+ + ++ + YG +I + ++D+L + R ++I D IY+YG+ YG+GF + +G S + C +DF L YG+ NG+ G +++C F + A L C+L + D+ EAA+ Sbjct: 231 AIDKLDKQFLYLLSTIAGLIDPALSSISNSCEQSSIQTQTYGWALIGGGSMDTLSDYLGNGRTPLDVITM--PDVIYSYGYNLGYGVGFASPFLLPTYLGSCS-IDCSSTDFTGLAQRYGITNGLAGQYIG-------ESKICNFGLDAKQALGCLLQQKGDNKEAAQ 704
BLAST of EMLSAG00000003251 vs. C. finmarchicus
Match: gi|592836960|gb|GAXK01120584.1| (TSA: Calanus finmarchicus comp162312_c0_seq2 transcribed RNA sequence) HSP 1 Score: 49.6766 bits (117), Expect = 5.587e-6 Identity = 48/168 (28.57%), Postives = 82/168 (48.81%), Query Frame = 0 Query: 41 ASERLDNQISYLIQRLPGLISTARDKINGAQSGEELRFKVYGVTVILASFKEIVADFLISDR---NIINFGGSDTIYTXXXXXXXXXXXXXXSIWA--VGPYSDLPCGPSDFKQLINEYGLQNGVVPYLNGYDNPLSLSTRVCEFEILAYMKLNCVLSGENDHIEAAE 203 A ++LD Q YL+ + GLI A I+ + ++ + YG +I + ++D+L + R ++I D IY+YG+ YG+GF + +G S + C +DF L YG+ NG+ G +++C F + A L C+L + D+ EAA+ Sbjct: 213 AIDKLDKQFLYLLSTIAGLIDPALSSISNSCEQSSIQTQTYGWALIGGGSMDTLSDYLGNGRTPLDVITM--PDVIYSYGYNLGYGVGFASPFLLPTYLGSCS-IDCSSTDFTGLAQRYGITNGLAGQYIG-------ESKICNFGLDAKQALGCLLQQKGDNKEAAQ 686
BLAST of EMLSAG00000003251 vs. C. finmarchicus
Match: gi|592836958|gb|GAXK01120586.1| (TSA: Calanus finmarchicus comp162312_c1_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 6.627e-1 Identity = 17/66 (25.76%), Postives = 34/66 (51.52%), Query Frame = 0 Query: 41 ASERLDNQISYLIQRLPGLISTARDKINGAQSGEELRFKVYGVTVILASFKEIVADFLISDRNIIN 106 A ++LD Q YL+ + GLI A I+ + ++ + YG +I + ++D+L + R ++ Sbjct: 142 AIDKLDKQFLYLLSTIAGLIDPALSSISNSCEQSSIQTQTYGWALIGGGSMDTLSDYLGNGRTPLD 339
BLAST of EMLSAG00000003251 vs. C. finmarchicus
Match: gi|592836957|gb|GAXK01120587.1| (TSA: Calanus finmarchicus comp162312_c1_seq2 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 6.888e-1 Identity = 17/66 (25.76%), Postives = 34/66 (51.52%), Query Frame = 0 Query: 41 ASERLDNQISYLIQRLPGLISTARDKINGAQSGEELRFKVYGVTVILASFKEIVADFLISDRNIIN 106 A ++LD Q YL+ + GLI A I+ + ++ + YG +I + ++D+L + R ++ Sbjct: 142 AIDKLDKQFLYLLSTIAGLIDPALSSISNSCEQSSIQTQTYGWALIGGGSMDTLSDYLGNGRTPLD 339
BLAST of EMLSAG00000003251 vs. L. salmonis peptides
Match: EMLSAP00000003251 (pep:novel supercontig:LSalAtl2s:LSalAtl2s178:595722:610138:1 gene:EMLSAG00000003251 transcript:EMLSAT00000003251 description:"maker-LSalAtl2s178-augustus-gene-6.4") HSP 1 Score: 698.353 bits (1801), Expect = 0.000e+0 Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 0 Query: 1 MKYLYCLVLACIIPLIQSETGKVEDDINAISLIQSKSSYSASERLDNQISYLIQRLPGLISTARDKINGAQSGEELRFKVYGVTVILASFKEIVADFLISDRNIINFGGSDTIYTYGFLFFYGLGFGFGSIWAVGPYSDLPCGPSDFKQLINEYGLQNGVVPYLNGYDNPLSLSTRVCEFEILAYMKLNCVLSGENDHIEAAEALSQAMYGFGYVGPFYLELEEARXDCGLSDFDNALREYAYVTDFSTTYGHSYTGSSDTDPHLLTYYVIKMKHALKRSIYCITSRKGSNQEAVITNSLIDLYAKLATERLSLTDGILSTSNNVENPTYQGASQSQYFFNK 342 MKYLYCLVLACIIPLIQSETGKVEDDINAISLIQSKSSYSASERLDNQISYLIQRLPGLISTARDKINGAQSGEELRFKVYGVTVILASFKEIVADFLISDRNIINFGGSDTIYTYGFLFFYGLGFGFGSIWAVGPYSDLPCGPSDFKQLINEYGLQNGVVPYLNGYDNPLSLSTRVCEFEILAYMKLNCVLSGENDHIEAAEALSQAMYGFGYVGPFYLELEEARXDCGLSDFDNALREYAYVTDFSTTYGHSYTGSSDTDPHLLTYYVIKMKHALKRSIYCITSRKGSNQEAVITNSLIDLYAKLATERLSLTDGILSTSNNVENPTYQGASQSQYFFNK Sbjct: 1 MKYLYCLVLACIIPLIQSETGKVEDDINAISLIQSKSSYSASERLDNQISYLIQRLPGLISTARDKINGAQSGEELRFKVYGVTVILASFKEIVADFLISDRNIINFGGSDTIYTYGFLFFYGLGFGFGSIWAVGPYSDLPCGPSDFKQLINEYGLQNGVVPYLNGYDNPLSLSTRVCEFEILAYMKLNCVLSGENDHIEAAEALSQAMYGFGYVGPFYLELEEARXDCGLSDFDNALREYAYVTDFSTTYGHSYTGSSDTDPHLLTYYVIKMKHALKRSIYCITSRKGSNQEAVITNSLIDLYAKLATERLSLTDGILSTSNNVENPTYQGASQSQYFFNK 342
BLAST of EMLSAG00000003251 vs. L. salmonis peptides
Match: EMLSAP00000003250 (pep:novel supercontig:LSalAtl2s:LSalAtl2s178:466180:470836:-1 gene:EMLSAG00000003250 transcript:EMLSAT00000003250 description:"snap_masked-LSalAtl2s178-processed-gene-4.2") HSP 1 Score: 147.517 bits (371), Expect = 4.424e-42 Identity = 79/203 (38.92%), Postives = 116/203 (57.14%), Query Frame = 0 Query: 31 SLIQSKSSYSASERLDNQISYLIQRLPGLISTARDKINGAQSGEELRFKVYGVTVILASFKEIVADFLISDRNIINFGGSDTIYTYGFLFFYGLGFGFGSIWAVGPYSDLPCGPSDFKQLINEYGLQNGVVPYLNGYDNPLSLSTRVCEFEILAYMKLNCVLSGENDHIEAAEALSQAMYGFGYVGPFYLELEEARXDCGLSD 233 SL+Q K+ S S +LD+QI + I +P LI A+ KI + E+ +G +VI+ S+ EI+AD+LI +R + NFGG T++ YGF+FFYGLGFG I P D PCGP DF ++I YG G+ + + ++LS R+CE I+ +LNC+LS + +EAAE G+ +E E R + GL + Sbjct: 24 SLMQ-KTELSVSTKLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGSSVIIGSWNEILADWLIFNRTLDNFGGQGTLFDYGFIFFYGLGFGL-PILDAAPSVDYPCGPGDFNKVIRHYGFHKGISSMIESPEQRITLSGRICELNIVLKTRLNCILSEDESFLEAAEV--------GFALDELIEAMEIRLEYGLKN 216
BLAST of EMLSAG00000003251 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold212_size255419-snap-gene-1.32 (protein:Tk00550 transcript:maker-scaffold212_size255419-snap-gene-1.32-mRNA-1 annotation:"rnd transporter") HSP 1 Score: 67.0106 bits (162), Expect = 1.560e-13 Identity = 40/123 (32.52%), Postives = 56/123 (45.53%), Query Frame = 0 Query: 194 GENDHIEAAEALSQAMYGFGYVGPFYLELEEARXDCGLSDFDNALREYAYVTDFSTTYGHSYTGSSDTDPHLLTYYVIKMKHALKRSIYCITSRKGSNQEAVITNSLIDLYAKLATERLSLTD 316 GE + E + ++QA YG+GY GPF LE E AR CG +D + AL ++ +V R GSNQ+A+ + IDLY +L TERLS+T+ Sbjct: 85 GELNKAEKIQVVAQAFYGYGYWGPFLLEFEPARLTCGRNDLETALFDFRFV-----------------------------------------KRAGSNQDALEVTTFIDLYTQLITERLSMTN 166 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003251 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003251 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 6
BLAST of EMLSAG00000003251 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000003251 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003251 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003251 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003251 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s178:595722..610138+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003251-686017 ID=EMLSAG00000003251-686017|Name=EMLSAG00000003251|organism=Lepeophtheirus salmonis|type=gene|length=14417bp|location=Sequence derived from alignment at LSalAtl2s178:595722..610138+ (Lepeophtheirus salmonis)back to top Add to Basket
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