|
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000003456 vs. C. finmarchicus
Match: gi|592896271|gb|GAXK01062104.1| (TSA: Calanus finmarchicus comp2502043_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 1.692e-3 Identity = 14/27 (51.85%), Postives = 21/27 (77.78%), Query Frame = 0
Query: 27 LESLEPCPCYAKCCLDSIITLFCVTLL 53
+E +PC CY KC +D++ +LFCV+LL
Sbjct: 194 MEICDPCYCYTKCWMDTVASLFCVSLL 274
BLAST of EMLSAG00000003456 vs. C. finmarchicus
Match: gi|592808896|gb|GAXK01145672.1| (TSA: Calanus finmarchicus comp1303864_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.499e-1 Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 0
Query: 33 CPCYAKCCLDSIITLFCVTLLG 54
CP Y+K L+ + LFC++LLG
Sbjct: 555 CPAYSKIILEHTVRLFCISLLG 620
BLAST of EMLSAG00000003456 vs. C. finmarchicus
Match: gi|592768638|gb|GAXK01185930.1| (TSA: Calanus finmarchicus comp44153_c0_seq1 transcribed RNA sequence) HSP 1 Score: 26.9498 bits (58), Expect = 4.813e+0 Identity = 10/35 (28.57%), Postives = 19/35 (54.29%), Query Frame = 0
Query: 5 NHPNDDEGDTISNRTADEQIDYLESLEPCPCYAKC 39
N + + N+ ++++I ++ SL C CY KC
Sbjct: 1893 KEKNPHKKSSKRNKMSEKKITFILSLIECMCYEKC 1997
BLAST of EMLSAG00000003456 vs. C. finmarchicus
Match: gi|592957606|gb|GAXK01000950.1| (TSA: Calanus finmarchicus comp638679_c0_seq2 transcribed RNA sequence) HSP 1 Score: 25.7942 bits (55), Expect = 9.405e+0 Identity = 8/20 (40.00%), Postives = 14/20 (70.00%), Query Frame = 0
Query: 32 PCPCYAKCCLDSIITLFCVT 51
PCPC+ +C + I+ + C+T
Sbjct: 105 PCPCWKECSMCQIVGVGCIT 164
BLAST of EMLSAG00000003456 vs. L. salmonis peptides
Match: EMLSAP00000003456 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1899:76094:84935:1 gene:EMLSAG00000003456 transcript:EMLSAT00000003456 description:"maker-LSalAtl2s1899-snap-gene-0.0") HSP 1 Score: 129.028 bits (323), Expect = 1.368e-40 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
Query: 1 MDELNHPNDDEGDTISNRTADEQIDYLESLEPCPCYAKCCLDSIITLFCVTLLGYFRSALKL 62
MDELNHPNDDEGDTISNRTADEQIDYLESLEPCPCYAKCCLDSIITLFCVTLLGYFRSALKL
Sbjct: 1 MDELNHPNDDEGDTISNRTADEQIDYLESLEPCPCYAKCCLDSIITLFCVTLLGYFRSALKL 62
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003456 vs. GO
Analysis Date: 2014-04-02 ( Blast vs. GO)
Total hits: 0
Match Name | E-value | Identity | Description | |
back to top
BLAST of EMLSAG00000003456 vs. L. salmonis peptides
Analysis Date: 2014-05-10 ( Blastp vs. self)
Total hits: 1
Match Name | E-value | Identity | Description | |
EMLSAP00000003456 | 1.368e-40 | 100.00 | pep:novel supercontig:LSalAtl2s:LSalAtl2s1899:7609... | [more] |
back to top
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
LSalAtl2s1899 | supercontig | LSalAtl2s1899:76094..84935 + |
Analyses
This gene is derived from or has results from the following analyses
Properties
Property Name | Value |
Logic name | ensemblgenomes |
Description | maker-LSalAtl2s1899-snap-gene-0.0 |
Biotype | protein_coding |
Evidence | IEA |
Note | Hypothetical protein |
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1899:76094..84935+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >EMLSAG00000003456-686222 ID=EMLSAG00000003456-686222|Name=EMLSAG00000003456|organism=Lepeophtheirus salmonis|type=gene|length=8842bp|location=Sequence derived from alignment at LSalAtl2s1899:76094..84935+ (Lepeophtheirus salmonis) ATGGATGAGCTTAATCATCCGAATGATGACGAGGGTGATACTATCTCTAA
CCGCACTGCAGATGAGCAAATTGACTACTTGGAGAGTCTTGAGCCATGTC
CCTGCTACGCCAAATGCTGTCTTGACTCCATTATTACTCTTTTTTGTGTC
ACTCTTCTGGGATAGTTATGTAGGGGATATTATATTAATATGGAAGAAAT
GAGGCAATGAAAAATACGAATGGAAATAACGAGAGTTGTTATTTATACTA
GTAAAATAATAAGAATGGTAAGTTTCTTTTGAATCAAGTACGGGGAAATA
ATGATCTGGATTTATGGTTTCTCCTACAAACACGCAGATTGATTGATGAT
TTATACAGGGTGGTTAAGATAAATTGGGAAATCTTTAAAGGCTTATAACG
TAGNNNNNNNNNNTAATAGAAATAGAAAGTTAGACTATCATGTAATCGGG
CTTTGTAGAACTTTTAATCTGGTGTATCGTAACGACTGCTGGGCAAGACA
GCACGGATTTTGAATAAACACGCAACCACTCATAGCCTATGACGTCGCTA
TTGCTAGAATTTTCAATTTAATATATCGTATCGGCTGCTGGTCTGGAAAA
ACAGATTTTGAAATAAACACGCAACTCCTCATTTACTATGACGTCAATAT
TAAAAGGATATCGGTCGTACGTGTGTTATGTTATAACCTTGTATTTCTAT
TAACCTTGGGGGGGAACCATATTTTTTTGAAAACTACATTAGATGACATT
CAATTAATCATAATGAGTTCAACTTCTCTTGATAACATCGTTCACACGTT
ACCAGAAGCTTTGGAAGGCTCAAGTGACCTCGTACAGATACAGCTTTAAC
ATTGTACGAAGGGGAATGAAGATCTTCAGAGCCTCCACAGACGAATAATA
CTATGCACAGGCCTCATGTCCAACCCTTTCCCAGAAATAGAAATTGCATG
GGTTCAGATACAGTCTGTTTGCAGGCCAAAATTCCGGGCTCCAAAAAGGT
GGACATTATATGGCCAAGAAATCCTGCTTTTTTTTTGGCTTTGTCGGTAG
GTGCACTGTCTTGTTGAAAGGTATCATTCTTGGGNAACCAAGGTTAATAG
AAATAGAAAGTTAGACTATCATGTAATCGGGCTTTGTAGAATTTTCAATC
TGGTGTATCGTAACGACTGCTGGGCAAGACAGCACGGATTTTGAATAAAR
ACGCAACCACTCATAGCCTATGACGTCGCTATTGCTAGAATTTTCAATTT
AATATATCGTATCGGCTGSTGGMCTGGAAAAACAGATTTTGAAATAAACA
CGCAACTCCTCATTTACTATGGCGTCAATATTAAAAGGGTTGAGGAAGTC
AAATATCAGTCGTACGTGTGTTATGTTATAACCTTGTATTTCTATTAACC
TTGGGGGGGGGGAGCCATATTTTTTGAAAACTACATTAGATGACATTCAA
TTAATCATAATGAGTTCAACCTCTCTTGATAACATCGTTCACACGTTACC
AGAAGCTTTGGAAGGCTCAAGTGACCTCGTACAGATACAGCTTTAACATT
GTACGAAGGGGAATGAAGATCTTCAGAGCCTCCACAGACGAATAATACTA
TGCACAGGCCTCATGTCCAACCCTTTCCCAGAAATAGAAATTGCATGGGT
TCAGATACAGTCTGTTTGCAGGCCAAAATTCCGGGCTCCAAAAAGGTGGA
CATTTTGTGGCCAAGAAATCCTGCTTTTTTTTTTGCCTTGTCGGTTGGTG
CACTGTCTTGTTGAAAGGTATCATTCTTAGGNCTACTACGTCCATCCAGA
GAATGTTACTTAAAAGYGCAAAACCAGTACAATGGCTTCACGGGATCTGC
ACRGGGTGCCCGGTAGCCRAGGYTATCAAGAAAGGKGGATCTCATTATAA
ATAATTGAACGTCATTAAATGTAGCATTCAAATAATTGAAAAAATATGGT
TCTATTCCATCTAGTTAGTTTGTTATAAACCTTTAAAGATTTTCCCAATT
TATCTGGACCACCCAGTATATTGTAGATATAAATATGTATATAAAATCAT
TCAATGGGTTGTTTTTTACTTTTCCACAATTCACTTTTTATGTTTTTTTA
CATAAATAGACTTTCACTAACCAGAACACAAATTAGAAAACAGCCCCAAA
AATACAATAACTAAGATTAATATATTTCCTACAGTTTGGGGGCGCTGTTT
TTTTACTGTGACGTCACAGGGAAGTGCTTTATTGATCACCCGCTTTTTAT
ATACAAAGAAACTACAGTTTTATATATSAAGTCCATAATTNNNNNNNNNN
NNNNNNNNNATGGAAGAAAGGATGAGTTAAGGGATATTTTGTAATCCGAA
AGTATGTCAAATTTTAACATACATATATTCATTTCACATAAAAGTACCCC
CCCCCCCCCTAATCTTACATGTTACATCTATATTAATAGAGCAAAGTGTG
TCTGTATGTTTGAATGATGAAAAATAGTCTTTTACCGCCACAGCTAGCCC
TCTGTCATTTGATATGGCTTATGGAACTTTCACATGACCAAACACTAAAA
ACTGGGATTTTGATTCCAAAGCACTTGATATATTCTGTACTTTTGTGATG
AATTAGTACCCACTCCTGGCTAAATTAGCTTTAAATTTACTTACACAATT
TCCCTCAACTTATTTATGTGAGAAGACCTTTTCCYTATTAACTTTAATCA
AAAATAAATATAGATTGCGGTTACACTAAGCTAAAATGTATATGATACAA
AAGTTATATAAAACTTCAATTGTAAATCCTTACAAAAAAAAAAAGCATGA
GTTTGTTGAGTGCTTGGTGTTATTTGCTTTGARAASCATCCACTATCCTC
AATGACGGTTTTAATCAAAATGGCAGTACTAATAAGTATGACGAGATATT
TTGAATGGGAATGTATATTGTATAATGCAGTGGTTCTSAAACTGTGCAAT
CTGCAGCTATTTCGATTGCGCTCTGTAGCATTTCTCTAATATACAGGGAG
CGGGGATCAAATTGTCGCCTACTTTAAACCTTGATAACTTGAAGACYACA
NAATCAGCACCCTGCCATGTGTTCAAAATCTCCATGCAGTGGTTAACCGA
GAACTGTTATGACGTCGTAACCAAGGATTTGTGGCCACCTAACTCTCCCG
ACCTTAATCCTTTGGACTATTTTGTGTGGGGCTATGTCTCTCSACATAGC
CCCKGACATCCCCATAGCACCAAGGCCACCCTGATGGACTCCATCAAGGA
GGTATTCGGCAACATGGACAATGAGATGGTCAGAAGAGCCTGCGGCCGGT
TCAGAGGCCGTATTGAGGCTGTTAATGATGCCAACTGTGATTATATCGAA
TGAATGGCTACTCAATACCTATATGCTCGTCATATCTGTGATTTTCAATA
AAAAAGTTAAAAAATGTATATTTTSTGTTGTTTTTTGTAGAAAAATATTT
TGGCGACAATTTGATCCCCGTTCCTTTATATTCTATGTGAATAGATATTA
GATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAA
AAAGGAAAWAGTTCAACAAAACATTCGAATTGTAATAGTTATGTATGTTC
AATCATAGAGGGCGCTTCAAATACCTTTATTTTTTTAAAGTTTATTGTAA
TAGACTTAGGATTTTTAAGCAATTTTTTGGCTCAAAAATAGCAAAAAAAG
AGCACTAAAAATATGAAAAATTCAAAAGTTTTGGATTAAAACATTGTCTT
TTGAAAGTATTGTGAATTAAAATTGAAATGAATTTGAATTTTGGAATGCT
TTAATTTAATTTTTTTAATTTGTTTTAGAATGCATCTTTTCCTTATTTAA
GTATGACTTTCCACACAATGAGACCTTTTATCTAATTTTATGAGCCTTCA
AAGTYCTAATTATCCGAACTACTCGAAAAAGTCGAGATCCTGTTCCTCCT
CCTCACTTCACGCTCCTTTGCTTGACGTACCAAAGTTTTTTCCTCATTTT
TAAAAGGTTGCGAGAATTGAATTTCAACTATCCTTTGTCCCTGTTACCAA
TTTCGAGATAGAAAGAGAAAATATGACGTGTGGGAAACTTATACAGGATA
CCCCAGTTTTATAAGAACAATTTAAAGTAATGAGTTCGATTTTGCTCTAT
ATTATATCGACAAATCAAGATTTTAGAAGGATTTTCTTACGTTAATTTTT
GCCTTCAATCAGTATTGGTAGTTTTAATCATACTAAGAGACGTACACATT
AGTATTTGAAGGAAATTTGACGTTGGCAAGATCTTCAGGAGTCTTGTTAG
ATGGAAACATTACATCATTACCACACTTGATATTACGTCCAACTATGGAT
TTTTGAAATTTTTCTCCAAAAAATTTAATATTCGATTTTTTTTCCACAAA
ATATTATATTTTTTGTGAACAGCTGTGGATTTTTGAAATTTTTTTCCCAA
AAAATTAAATTGTTTGTGAATAGCTGTGAATTTTTTGAAAAAAATTTAAA
TATTAAAGAATCAGAATTGGCATTGGGATTTTTTTCTAAATTCGRATTAG
GATCGTGTTTTTTTGTTTTTTAATCTTCCCATCACGAGTATACAGTTGTA
TTGTAAGTGAGCTGAGATTGTATATAGTTTGAGAACCACTTATATAATAT
TTGTACAAATTTATTYTGGAATATAAAGAAATGATAAGGATGAAGGAAAG
AAAACAATGGAAAAGTGARAAATGATCATCATTGGGAGATGAAATCATAA
TAATGAAAAAAAACAAAAAAAAATACAAGATAAAGGCCTAAGTAATCCAA
TATCTTTCTCATCAAAATTGGTATTATACATATTTATTTATTTATGTACA
AGTTGTAACTTGTATCAACATATTGTACCAGTTGAAATTATTACGTTTTA
TTTGATTATCCTGATKGCTGGAATATATATATATATATATGTATTTTTTT
TGAAGGGGGGGGGGATGCCTTCATTTTTGGAATTTTGTTAAGAACAATCC
AAAAATTCAAAAATCAAAAATCTACAGTTATTCAGGAAAAAATCCATATC
TATTCTCAAAAAATTAAATTTTTTTGAACAAAATTTCAAAAATCCATCAT
TTCATGGTCACTTCCCAAGGAGCATAAATACACAGTACCCTCCATGGGTC
ACAGAACCCCTCAATTTAATGCAACAATCCATAGCTGCTTACAAAAAATT
TCAAATATTAAATTTTTTGGKGAAAAATTTCAAAAATCCAAAGCTGTTCA
CAAAAAATATCAAAAGTTAACAACTACTTATAAAAAATCCATAGCCATTA
TTTAAAAAAATTTAAAAATCCGTAGCTATTTTTTCAAAAAAATCAAAAAA
TGCACAGCTGTTGATAAAAAATTTAATTTTCTGGAAAATAAATTTCAAGA
AATAATTTTCAAAMTTTTATATTTTCAAAAGAAATTCAAAATTTACTGCT
GTTCAAAAATAGTTAAATTTCTTGGGGAAAAAATTCAAAAATTAACTTGC
AGATATTTAATTTTTTGAGAAAAAATTTTTAAACTTAATTTTTGGGTCAA
AAATTTAATTTAAAATTTTCTAATAAAAAACATAAAMTCCTTAAMMGMGM
GMGMGGGGYGGGGGGYGGGWTACGTTACACACACTGTAGANACGCCCCTG
ATATTACAAACGCTTTTGGACAGTATTGCGCTATCCCAGTTTAGTCGTTA
ATTATTGTGGGTCGAGTATGGAGGTCTCAAAAAAAGAAATTTGCCATATT
TTACTACCTGAGAGGGAAAAACAAATCGAAAGCAACCAAGAATATTTGTG
ATGGAAAATACATTTTCATGTATTGTGTACAAGTTGTAACTTGTATGACC
AAGGCAATGTGTACAANNNNNNNNNNNNNAAAAAGGTTATGAATAATTCA
GAATAGGNTCTTCTGAAGAGAATAAGGCAMTTTCATTATATTTTCTTTAT
CTAAGCTGTTATCAGTATTATTTAATTCTTGAGGAGTGAACTTATTTTTC
TACTACATACAAGCTATCATTGATGTATACCAAGGATGTCCAACCTTTTA
ACATAATGGGCCACAGAACCTATAAAAATGAATTTCATGAAAAATGGCTT
TATAAAACAAAAATATTAAATACATATTTAGGCAAAATATAAGAGAAGAC
CAATTTTTTTTTGAAGGCCAAACTGCCTCAAAAGCCCAATCTGGCAACCA
TGTGCAGGGGCGTCCGCAGGATTAGGACTTTTTTTGGGCGTTGGGCTTGT
AACTTAAAAAAACAAAACATTATCTCAGTTTTCTCATTATTTTTTTCCCC
ATACAGAATTTTTTTCAAAAATTCCTTTATATGGGAAGACCTACAGCCCC
TCAATCCCCACAGGTGACGCCTCTGCTGTAAGAGTTTCAGAACATACAAT
ATGACGTCAAATATTTTTCAATGTTTTTACGTTTTATGTGTGCTATACGC
ATTTTGATGATATTATGACCATTTTAATAAAAAAATACTACTTGAAGTGA
GAATGAAAAGTAGGCCACAGTTAAACATTAAGCGGGGCGAAATGCAACCC
GCAGGCCACGGGTTGGACATTCGTGATTGTATACGAAACCAAATTGAGCA
TGTGCTCCTAAAATATTATTTATAGTACTCATTAATGTAATTATGATTCA
AGAATTAGATTTTCATTCTAGATTTTTTAACTTACATTTGAATTATATTA
AAGGTGCCGTGTAAGGTAATCCTGCCTTAAACTATATTGGACCAGAACAT
TTTGCCTGAAACCCTTTTGCCTAGAAACCATTTTATATCATGTATATTTC
ATCACTATTTATAAATAAATGAGGTTTTTACGTCGTTATTGTTCAATTTG
GTTGCCATTAATGTTCCTTTTGAATTTTCTATATCCTAATATGTTAAAGT
GTATTATTATSAAACTCTTCAAATCTCTGTTTTTTGATGGAATAAAAGTG
GACTTACCCTCTTGCCTCGTATTAGAGTCTTTTCTAGTATGAATAATCCA
TCATGTCTAATCATAATTACCTAATGGAGAAGTGATTAGCAATTCTTATA
TTCCAATCTTTGTCTTRTTTTTTCTTGTTCTACTAATTTTASTATTCGCT
TGTAATCAAGCAAACAATGTTATAGTATTCAGCTTACATACTTATTTTAT
GGAGAAGTCTTCTTAGACAAATATGATGAGAGGAAATGAATAATATTGGA
GATTGCCAATTCCCTAAAACACTTTCAAAGCCAATGCCACTGATATTTTT
AGGTTATCACTTTATAGGTATTTTATTTTTATTTGAGTTATTGATATATA
CGACTGTATATTTTAATTCGACTCTTTACCGTTCTAGTATGTACATAAAT
AAAAAAGTATTCTACAATTCATGTAATCATCTAATTTATTTAATGGCGGT
ACGTATGATTGGGTCAACTCTATGGGAGGGTCACTGCCAATATTATGCGT
TTTCGTCAATCCAATAAGAATAATTACTCAATCATGTCGAATAATAATTA
ATTGATAACAGAGAAGTGATTTGCACTTCTTTCATTGAAGTTACTGTCGT
GTTTGTGTATTATTTAAAGTACTAAACTGTAAAGATTTGGACCAATTACT
ACTGGGCCGTGTTTATTTACTTTTGACTTAATTCGATATTCATGACATAA
TGAGATTTTTTTCGTGTATGCATTGAAATTTTGGAGCATGATTCAATCAT
TTTTTCAACAGAAAACAACTAATGAATGTGTTTTACAGTAATACACATGA
CATATTTTGATTAAAAAATTCCAAAGGAAGATCAATTTTAACAAAAAATA
AAAAATTTATAAATCTTATTTATTTATAAATTAATTGTATTTGCGATTCC
TATTCCTATTTAATACTATTCTGAGTTACGAAAAAAACCCTCCAAATTCT
GAAATTTATTGAGGAAAAAAAATTTCAAAGCATATAATACTTGAAATTTT
TCAAGTTTTATTTTCCAAACTTTTCTTGAAAAAATTTAATATTTGATTTT
TTTTCTCCAAAATATCTTATATTAGAAATAAAAAATTCCAAAAAATTTAA
TTACTTTTGAATAAGTTTGAATTTTTGAAAATAAAAATTCCATCATTTTA
ATTTTTTTTTTAATAGCTATGGCTTTTTATACTTTCTGTTAAAAAACTGT
AGAGTTTTGAAAAAAAATCGAAAAATTTTCATTGTTTGTCTAGCTGTGAA
TTTTTAAAAAAAATTTAGAAAAATCTATTTTTTTTGTAAATAACTATATA
TCTTTGAAATATTTTTCTTAAAAAAATGTAATATTTCATTTTTATTTCCA
AATATCTTATATTATAAATAAAATTCCAAAAAATTTAATTTATTTGAATA
GCTTTGAAATCTTGAAATTTTTCTTCAAAATTTGTGATCAGCTTTGGCTG
TTTGAAATTTTTCTCGAAAAAATTCAATTGTTTGTGAATAGCTATGAATT
TTTTTTAAAAATCAGAAAAATATAATTTTTTCTGAATACTTGGGAAATTT
TTGAAAAAATTTTAAATATTAAATTGCATATTTGTAATTTATTTTTTCAA
AAGTTTGCACCAACTTTTTAATAGGAAAAGAAATCCTTATTAATACTAAA
ATAAAATAATAATTAATAATAAAAAATTTCAAAATGCACTATGTATTATA
ATTCAACTTTTTTCAGTTTCAGATCCGCCTTAAAACTTTGATATGATATA
CTTAGATTAAATACCCATCAAACAAGAAGAAAATCCTTGTTTGAGATGTC
GAGACTCGGAGAAGTATACATCAATATGCATAGAAATGTTTTTTTGAACA
AAATTCTAAATTCATATTCCACATTTTTATTTTTTCGTATTG back to top
|