EMLSAG00000003604, EMLSAG00000003604-686370 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003604
Unique NameEMLSAG00000003604-686370
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000003604 vs. C. finmarchicus
Match: gi|592763642|gb|GAXK01190926.1| (TSA: Calanus finmarchicus comp334290_c3_seq4 transcribed RNA sequence)

HSP 1 Score: 46.2098 bits (108), Expect = 2.839e-5
Identity = 40/162 (24.69%), Postives = 77/162 (47.53%), Query Frame = 0 
Query:   63 TYPTGIAMICSNXGLVFASIIGPFAVHDPIPIINGKKN--------------------IQDEIRNYLLLFAFIIGVIFMLVAFTFPE--PIYDEMQDPSPSIK--QNIFKILCDKDIVFLLSVNALSTVPIYWSSTFLPIYLQRYGFGQKITGGLMSLSIVL 200
            T  TG+A++  N G + +S+ GP  V DP+ ++  + N                    ++ +I N++     +  V+F LV   FP    I  E     P +K    +   L D+++ +LL VN L+++P  W  + + + L+ +   +K+ G L S++I++
Sbjct:  648 TLATGLAVLAINLGSIVSSLAGPAFVEDPVMLLPDRTNSSGWWNHSHTYPPWLDITWTLRSQIGNFMTFHFLMALVVFALVVVYFPSSPEIPPENAKTIPRLKPMDGLRVALRDRNMFYLLLVNGLTSLPFMWEMSLMDVTLKPFRVNEKVVGYLTSITIIV 1133
[Close]
BLAST of EMLSAG00000003604 vs. C. finmarchicus
Match: gi|592763643|gb|GAXK01190925.1| (TSA: Calanus finmarchicus comp334290_c3_seq3 transcribed RNA sequence)

HSP 1 Score: 46.2098 bits (108), Expect = 2.927e-5
Identity = 40/162 (24.69%), Postives = 77/162 (47.53%), Query Frame = 0 
Query:   63 TYPTGIAMICSNXGLVFASIIGPFAVHDPIPIINGKKN--------------------IQDEIRNYLLLFAFIIGVIFMLVAFTFPE--PIYDEMQDPSPSIK--QNIFKILCDKDIVFLLSVNALSTVPIYWSSTFLPIYLQRYGFGQKITGGLMSLSIVL 200
            T  TG+A++  N G + +S+ GP  V DP+ ++  + N                    ++ +I N++     +  V+F LV   FP    I  E     P +K    +   L D+++ +LL VN L+++P  W  + + + L+ +   +K+ G L S++I++
Sbjct:  648 TLATGLAVLAINLGSIVSSLAGPAFVEDPVMLLPDRTNSSGWWNHSHTYPPWLDITWTLRSQIGNFMTFHFLMALVVFALVVVYFPSSPEIPPENAKTIPRLKPMDGLRVALRDRNMFYLLLVNGLTSLPFMWEMSLMDVTLKPFRVNEKVVGYLTSITIIV 1133
[Close]
BLAST of EMLSAG00000003604 vs. C. finmarchicus
Match: gi|592763645|gb|GAXK01190923.1| (TSA: Calanus finmarchicus comp334290_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 46.2098 bits (108), Expect = 2.997e-5
Identity = 40/162 (24.69%), Postives = 77/162 (47.53%), Query Frame = 0 
Query:   63 TYPTGIAMICSNXGLVFASIIGPFAVHDPIPIINGKKN--------------------IQDEIRNYLLLFAFIIGVIFMLVAFTFPE--PIYDEMQDPSPSIK--QNIFKILCDKDIVFLLSVNALSTVPIYWSSTFLPIYLQRYGFGQKITGGLMSLSIVL 200
            T  TG+A++  N G + +S+ GP  V DP+ ++  + N                    ++ +I N++     +  V+F LV   FP    I  E     P +K    +   L D+++ +LL VN L+++P  W  + + + L+ +   +K+ G L S++I++
Sbjct:  648 TLATGLAVLAINLGSIVSSLAGPAFVEDPVMLLPDRTNSSGWWNHSHTYPPWLDITWTLRSQIGNFMTFHFLMALVVFALVVVYFPSSPEIPPENAKTIPRLKPMDGLRVALRDRNMFYLLLVNGLTSLPFMWEMSLMDVTLKPFRVNEKVVGYLTSITIIV 1133
[Close]
BLAST of EMLSAG00000003604 vs. C. finmarchicus
Match: gi|592763644|gb|GAXK01190924.1| (TSA: Calanus finmarchicus comp334290_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 46.2098 bits (108), Expect = 3.100e-5
Identity = 40/162 (24.69%), Postives = 77/162 (47.53%), Query Frame = 0 
Query:   63 TYPTGIAMICSNXGLVFASIIGPFAVHDPIPIINGKKN--------------------IQDEIRNYLLLFAFIIGVIFMLVAFTFPE--PIYDEMQDPSPSIK--QNIFKILCDKDIVFLLSVNALSTVPIYWSSTFLPIYLQRYGFGQKITGGLMSLSIVL 200
            T  TG+A++  N G + +S+ GP  V DP+ ++  + N                    ++ +I N++     +  V+F LV   FP    I  E     P +K    +   L D+++ +LL VN L+++P  W  + + + L+ +   +K+ G L S++I++
Sbjct:  648 TLATGLAVLAINLGSIVSSLAGPAFVEDPVMLLPDRTNSSGWWNHSHTYPPWLDITWTLRSQIGNFMTFHFLMALVVFALVVVYFPSSPEIPPENAKTIPRLKPMDGLRVALRDRNMFYLLLVNGLTSLPFMWEMSLMDVTLKPFRVNEKVVGYLTSITIIV 1133
[Close]
BLAST of EMLSAG00000003604 vs. L. salmonis peptides
Match: EMLSAP00000003604 (pep:novel supercontig:LSalAtl2s:LSalAtl2s197:29645:30465:-1 gene:EMLSAG00000003604 transcript:EMLSAT00000003604 description:"maker-LSalAtl2s197-augustus-gene-0.26")

HSP 1 Score: 411.379 bits (1056), Expect = 3.057e-147
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 
Query:    1 MCMLPLCLTTSIRVIPLLVLNEPENIFTTLVYISSFTIGVVGVIFYSSLSKFSSLYFRSASTTYPTGIAMICSNXGLVFASIIGPFAVHDPIPIINGKKNIQDEIRNYLLLFAFIIGVIFMLVAFTFPEPIYDEMQDPSPSIKQNIFKILCDKDIVFLLSVNALSTVPIYWSSTFLPIYLQRYGFGQKITGGLMSLSIVLRFKDTFF 207
            MCMLPLCLTTSIRVIPLLVLNEPENIFTTLVYISSFTIGVVGVIFYSSLSKFSSLYFRSASTTYPTGIAMICSNXGLVFASIIGPFAVHDPIPIINGKKNIQDEIRNYLLLFAFIIGVIFMLVAFTFPEPIYDEMQDPSPSIKQNIFKILCDKDIVFLLSVNALSTVPIYWSSTFLPIYLQRYGFGQKITGGLMSLSIVLRFKDTFF
Sbjct:    1 MCMLPLCLTTSIRVIPLLVLNEPENIFTTLVYISSFTIGVVGVIFYSSLSKFSSLYFRSASTTYPTGIAMICSNXGLVFASIIGPFAVHDPIPIINGKKNIQDEIRNYLLLFAFIIGVIFMLVAFTFPEPIYDEMQDPSPSIKQNIFKILCDKDIVFLLSVNALSTVPIYWSSTFLPIYLQRYGFGQKITGGLMSLSIVLRFKDTFF 207
[Close]
BLAST of EMLSAG00000003604 vs. L. salmonis peptides
Match: EMLSAP00000007452 (pep:novel supercontig:LSalAtl2s:LSalAtl2s426:69898:77705:1 gene:EMLSAG00000007452 transcript:EMLSAT00000007452 description:"maker-LSalAtl2s426-augustus-gene-0.7")

HSP 1 Score: 249.21 bits (635), Expect = 1.150e-76
Identity = 126/203 (62.07%), Postives = 159/203 (78.33%), Query Frame = 0 
Query:    1 MCMLPLCLTTSIRVIPLLVLNEPENIFTTLVYISSFTIGVVGVIFYSSLSKFSSLYFRSASTTYPTGIAMICSNXGLVFASIIGPFAVHDP-IPIINGKKNIQDEIRNYLLLFAFIIGVIFMLVAFTFPEPIYDEMQDPSPSIKQNIFKILCDKDIVFLLSVNALSTVPIYWSSTFLPIYLQRYGFGQKITGGLMSLSIVLRF 202
            M +LPLCL T  R++PLL L  P  +F TLV+ISSF+IGV+GVIFYSSLSKFSS+YF SA+ T PTGIAM+ SN G+VF+S+IGP+ V DP   I + +K +Q EIRNYLLL+A IIG + +++ FTFP+PIY    + SPSI  NI+KI+ +KD+  LLS  ALS+VPIYWSSTFLPIY +RY FGQ+I GGLMS S+V+RF
Sbjct:  771 MGVLPLCLATIARLLPLLALENPGEVFKTLVFISSFSIGVIGVIFYSSLSKFSSIYFGSAAMTLPTGIAMLFSNIGIVFSSVIGPYIVEDPSFSIPDEEKILQAEIRNYLLLYAVIIGTLSIVIIFTFPDPIYVGQVNQSPSIGDNIYKIMKNKDVTLLLSTYALSSVPIYWSSTFLPIYFERYHFGQEIVGGLMSASVVIRF 973
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003604 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003604 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592763642|gb|GAXK01190926.1|2.839e-524.69TSA: Calanus finmarchicus comp334290_c3_seq4 trans... [more]
gi|592763643|gb|GAXK01190925.1|2.927e-524.69TSA: Calanus finmarchicus comp334290_c3_seq3 trans... [more]
gi|592763645|gb|GAXK01190923.1|2.997e-524.69TSA: Calanus finmarchicus comp334290_c3_seq1 trans... [more]
gi|592763644|gb|GAXK01190924.1|3.100e-524.69TSA: Calanus finmarchicus comp334290_c3_seq2 trans... [more]
back to top
BLAST of EMLSAG00000003604 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000036043.057e-147100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s197:29645... [more]
EMLSAP000000074521.150e-7662.07pep:novel supercontig:LSalAtl2s:LSalAtl2s426:69898... [more]
back to top
BLAST of EMLSAG00000003604 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003604 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003604 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003604 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s197supercontigLSalAtl2s197:29645..30465 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s197-augustus-gene-0.26
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003604 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003604EMLSAT00000003604-699451Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s197:29645..30465-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003604-686370 ID=EMLSAG00000003604-686370|Name=EMLSAG00000003604|organism=Lepeophtheirus salmonis|type=gene|length=821bp|location=Sequence derived from alignment at LSalAtl2s197:29645..30465- (Lepeophtheirus salmonis)
TTGTCTACTGTGATCAAGTATATGTGCATGCTTCCATTATGTTTAACAAC
TTCAATCAGAGTTATTCCTCTTTTAGTTCTCAATGAACCAGAAAATATTT
TTACTACGTAAGAAGAATGATTTATAATTACTTTTGCTTTCTTTATAAAT
TTCTTTTTTAGATTGGTTTATATAAGTTCTTTCACGATTGGAGTAGTTGG
AGTCATATTTTACAGCTCTTTATCCAAATTTTCGTCCCTTTATTTTAGAT
CAGCTTCAACAACATATCCTACAGGGATAGCAATGATATGCTCAAATRTT
GGACTTGTATTTGCATCAATCATTGGCCCTTTTGCTGTTCATGATCCAAT
CCCGATAATTAACGGAAAAAAAAATATTCAAGATGAAATACGAAATTATC
TTCTTTTATGTAAATTTCAATTAAAATTAATTACTATGATTTATTCTCGG
ACAATTTAGTTCTATCTTTTTAGTTGCGTTCATTATTGGAGTTATTTTCA
TGTTGGTTGCTTTTACCTTCCCAGAACCAATCTATGATGAAATGCAGGAT
CCATCTCCTAGTATTAAGCAGAATATTTTTAAAATTTTATGGTAAGTCCA
ATACCATTATTTATCATTTGATCGACTGAGCCACCCCCTTTTATTGCAGT
GATAAGGACATTGTCTTTTTACTCTCAGTGAATGCTTTAAGTACAGTTCC
TATTTATTGGAGTTCCACTTTTCTGCCCATATACTTACAACGCTACGGCT
TCGGACAAAAAATTACTGGCGGACTAATGTCCCTTTCTATAGTCTTAAGG
TTTAAAGATACTTTCTTTTGA
back to top
Add to Basket