EMLSAG00000003661, EMLSAG00000003661-686427 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003661
Unique NameEMLSAG00000003661-686427
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003661 vs. C. finmarchicus
Match: gi|592900194|gb|GAXK01058181.1| (TSA: Calanus finmarchicus comp287044_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 7.327e-1
Identity = 13/35 (37.14%), Postives = 24/35 (68.57%), Query Frame = 0 
Query:   24 QSTMKRLNVNILISFLNGYSHWSLSKKFGSYVLKF 58
            Q  M+++++ +L+ FL+ YSHW+L ++   Y L F
Sbjct: 1612 QWKMQKISLKVLLRFLSRYSHWNLVRRSDCYHLYF 1716
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BLAST of EMLSAG00000003661 vs. L. salmonis peptides
Match: EMLSAP00000003661 (pep:novel supercontig:LSalAtl2s:LSalAtl2s199:96562:99119:1 gene:EMLSAG00000003661 transcript:EMLSAT00000003661 description:"snap_masked-LSalAtl2s199-processed-gene-1.5")

HSP 1 Score: 1053.89 bits (2724), Expect = 0.000e+0
Identity = 507/507 (100.00%), Postives = 507/507 (100.00%), Query Frame = 0 
Query:    1 MLLQEVVMPCLFEASFKTGRIHPQSTMKRLNVNILISFLNGYSHWSLSKKFGSYVLKFNAGIGLKHRITKFNPRKWNDKKCIKKKIAPASIDKGRANVSPSKKKKGNEKKKIEKHVQNGSRLYHHQQTKKHPKVRQRINSGEGSSEADSLSWDDYDVAAHKRRQGIHTLENVESLISTYSSPSLSSSSASSKESTPEMHQEGKLLLQEMKELRKEIKKMGDTSVLENNTHSKVIQLLPTDYSIEELQEMMNKMEEEDRCWDSGYNDKEFSSDKEEDMRFKEISSEREYSESIVPEDFDEKLQESDDEEVPFDLEEVHSSHEEEDDVSISESLGSSIVVELSTSSKNMAQYIGATTGARTQISKNQKKKQKRQRAKLRHKNVTRYTAPIAPSGSRNKRSAWSPYHTTRWANYCANTPTPDKEIVAGMDSILGRETINKNLTPTPIMKGRTVIYKNLFAWEVSFCDTKERYKELLQKKFVQDQLKLQSILDNSFHSENTMAIGRSITVS 507
            MLLQEVVMPCLFEASFKTGRIHPQSTMKRLNVNILISFLNGYSHWSLSKKFGSYVLKFNAGIGLKHRITKFNPRKWNDKKCIKKKIAPASIDKGRANVSPSKKKKGNEKKKIEKHVQNGSRLYHHQQTKKHPKVRQRINSGEGSSEADSLSWDDYDVAAHKRRQGIHTLENVESLISTYSSPSLSSSSASSKESTPEMHQEGKLLLQEMKELRKEIKKMGDTSVLENNTHSKVIQLLPTDYSIEELQEMMNKMEEEDRCWDSGYNDKEFSSDKEEDMRFKEISSEREYSESIVPEDFDEKLQESDDEEVPFDLEEVHSSHEEEDDVSISESLGSSIVVELSTSSKNMAQYIGATTGARTQISKNQKKKQKRQRAKLRHKNVTRYTAPIAPSGSRNKRSAWSPYHTTRWANYCANTPTPDKEIVAGMDSILGRETINKNLTPTPIMKGRTVIYKNLFAWEVSFCDTKERYKELLQKKFVQDQLKLQSILDNSFHSENTMAIGRSITVS
Sbjct:    1 MLLQEVVMPCLFEASFKTGRIHPQSTMKRLNVNILISFLNGYSHWSLSKKFGSYVLKFNAGIGLKHRITKFNPRKWNDKKCIKKKIAPASIDKGRANVSPSKKKKGNEKKKIEKHVQNGSRLYHHQQTKKHPKVRQRINSGEGSSEADSLSWDDYDVAAHKRRQGIHTLENVESLISTYSSPSLSSSSASSKESTPEMHQEGKLLLQEMKELRKEIKKMGDTSVLENNTHSKVIQLLPTDYSIEELQEMMNKMEEEDRCWDSGYNDKEFSSDKEEDMRFKEISSEREYSESIVPEDFDEKLQESDDEEVPFDLEEVHSSHEEEDDVSISESLGSSIVVELSTSSKNMAQYIGATTGARTQISKNQKKKQKRQRAKLRHKNVTRYTAPIAPSGSRNKRSAWSPYHTTRWANYCANTPTPDKEIVAGMDSILGRETINKNLTPTPIMKGRTVIYKNLFAWEVSFCDTKERYKELLQKKFVQDQLKLQSILDNSFHSENTMAIGRSITVS 507
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BLAST of EMLSAG00000003661 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold103_size370364-snap-gene-0.16 (protein:Tk07509 transcript:maker-scaffold103_size370364-snap-gene-0.16-mRNA-1 annotation:"hypothetical protein Y032_0044g935")

HSP 1 Score: 82.0333 bits (201), Expect = 1.576e-16
Identity = 59/148 (39.86%), Postives = 81/148 (54.73%), Query Frame = 0 
Query:  132 PKVRQRINS--GEGSSEADSLSWDDYDVAAHKR------------RQGIHTLENVESLISTYSSPSLSSSSASSKESTPEMHQEGKLLLQEMKELRKEIKKMGDTSVLENNTHSKVIQLLPTDYSIEELQEMMNKMEEED-RCWDSGY 264
            P  R+R++S     S E DSL WDDYDV   K             ++   T+   ES IS  SS     S    KE +P+  +EG+LLL+EMKELR+EIKKMGD S +         QL  T    +E+QEM++ ++++D + WDSGY
Sbjct:  327 PLTRKRLSSFGTTDSCETDSLFWDDYDVEKPKTPVLNFSDTSALLKRSPSTISLAESDISDMSS---EGSMIGVKEGSPDNLREGRLLLREMKELRREIKKMGDASTIAVPFRK---QLSMTGAINQEIQEMLSSLDKDDSKMWDSGY 468
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003661 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003661 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592900194|gb|GAXK01058181.1|7.327e-137.14TSA: Calanus finmarchicus comp287044_c0_seq1 trans... [more]
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BLAST of EMLSAG00000003661 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000036610.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s199:96562... [more]
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BLAST of EMLSAG00000003661 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003661 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003661 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003661 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold103_size370364-snap-gene-0.161.576e-1639.86protein:Tk07509 transcript:maker-scaffold103_size3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s199supercontigLSalAtl2s199:96562..99119 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s199-processed-gene-1.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003661 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003661EMLSAT00000003661-699508Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s199:96562..99119+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003661-686427 ID=EMLSAG00000003661-686427|Name=EMLSAG00000003661|organism=Lepeophtheirus salmonis|type=gene|length=2558bp|location=Sequence derived from alignment at LSalAtl2s199:96562..99119+ (Lepeophtheirus salmonis)
ATGTTACTCCAAGAAGTTGTAATGCCTTGTTTATTTGAGGCCTCTTTTAA
GACAGGTATAGTAGTGTACTAGCTTGGCTTTCTCTTCCTTCTGAATGTTT
GATTGTAATTAGAAATGGGAAGTTAGGGGCAAAGGCAAATCTCTAGAGTG
TTTTTTTTTCTTCATTGATTTGTGATCTGTGTTTGTTTATTTCCGGTGTC
AGTTGATATGATTGAGGTAAGCACATGAATATTGAATGACTTTTAAATGA
GGCAGTTATTTCTATGTCAATGTATCATTACTCACACTCTAAGTACGTAT
GAAGATACCAGCTTTTGGCTCATGTCCAGTTTTATTTATTTGTCATAAGT
ATACTTTCTTATCAGTTTGAATCGAACTTACTTTATGTCAAGGATTTGAA
ATAATAAGAAAAAAACAACAATTGAATGACTTTCTAATTTTTCTCTCTTT
TCCAGGACGAATTCATCCCCAGTCGACTATGAAAAGGCTGAACGTGAATA
TCCTTATATCATTCCTCAATGGATATTCGCATTGGAGTTTATCTAAGAAA
TTTGGGTCCTATGTCCTCAAGTTTAATGCTGGTATTGGCTTAAAACATCG
GATTACAAAGTTTAATCCACGAAAATGGAACGACAAGAAATGTATTAAAA
AAAAGATAGCRCCTGCATCCATTGATAAAGGCAGAGCCAATGTGTCTCCA
TCAAAAAAAAAGAAGGGCAATGAAAAGAAAAAGATTGAAAAACATGTGCA
AAACGGGAGTCGACTCTATCATCATCAACAAACCAAAAAGCACCCCAAAG
TTCGCCAACGTATCAACTCTGGAGAAGGGAGTTCCGAAGCGGATTCCTTA
TCATGGGATGACTACGATGTTGCTGCTCACAAAAGGAGACAGGGAATACA
TACCCTTGAGAACGTTGAGTCTCTCATCTCAACTTATTCCTCTCCTTCCC
TAAGTTCTTCTTCCGCCTCATCCAAGGAGTCCACTCCAGAGATGCACCAG
GAAGGAAAACTTTTACTTCAGGAAATGAAGGAACTCAGAAAGGAGATTAA
GAAAATGGGAGATACTTCTGTCCTTGAGAACAACACTCACTCCAAGGTGA
TACAACTACTTCCAACGGACTATTCAATTGAGGAACTCCAAGAAATGATG
AACAAAATGGAGGAAGAGGATCGTTGTTGGGATTCTGGATATAATGATAA
GGAATTTTCATCTGATAAGGAAGAAGATATGCGATTCAAAGAGATTTCAT
CCGAGAGAGAGTACTCTGAGAGCATTGTTCCGGAGGACTTTGATGAAAAG
CTTCAAGAAAGTGATGATGAAGAAGTCCCTTTTGATCTCGAAGAAGTTCA
TTCCTCACACGAAGAAGAGGATGACGTATCTATATCAGAATCTTTAGGCT
CATCCATTGTTGTGGAGCTGAGTACTTCCTCAAAAAATATGGCTCAATAC
ATTGGGGCTACTACAGGAGCACGTACTCAAATTTCCAAAAATCAAAAGAA
AAAACAAAAAAGGCAAAGAGCAAAGTTACGCCATAAAAACGTGACGCGAT
ACACAGCTCCCATTGCTCCTTCAGGAAGCCGGAACAAACGCTCAGCTTGG
TCTCCCTATCACACAACAAGGTGGGCCAATTACTGTGCAAATACTCCAAC
CCCAGACAAAGAAATTGTTGCAGGCATGGACTCCATTCTGGGTAGGGAAA
CCATAAATAAAAACTTGACTCCCACTCCTATCATGAAGGGACGGACCGTC
ATCTACAAGAACCTCTTCGCATGGGAAGTTTCATTTTGTGATACAAAGGA
GCGTTACAAGGAATTACTTCAAAAGAAATTTGTTCAGGATCAGTTAAAGC
TTCAATCCATCCTGGACAATAGCTTTCATTCAGAGAACACAATGGCCATT
GGAAGAAGCATTACGGTTTCTTAAAGGCACAACTCTCGTTTTTATTTTCT
AGTCATAAATCTTCCTCTTTTAAAAAGAAGGAGTCTGACTCCAACAGAAA
GTAACGGAGGAGTCCCGTGATTAAAATTATCCTATCCATGTATAGTTTTT
CGGAGTGTCAAGTCTGATGATTAAGCAAAGAGCTTGTCTCTCGATTAATC
TACATACCTATTAAAAGTTATAGAATCATTTTATGGATATTGAGTGAAAC
CTTTTGGAAATCAAAAACAAGAAACAAAGTCTCTTCATTTTTGAATGTGG
TGTGAAGACTCATAGTCTTGGATTTGGAGTACATTACTTCATACTGAAAC
TTCATTCAACCATCATAATAAGCTATTTTTCAGTTTCTGTAAACTATTTA
TAAATATCTTTTTCTTTGCACAGAGTATTTTGTCAAAAACAAAAAAAACA
AAAAAAAAACATATTCTCATCAACACTTACCTAAATCCGTATATGACTAG
TTATAGGCTTCCATTATAAAAGAACAAAACGTGTATTTCCCTGTATTGTT
ACGAAGATTGGTGATTTTATATTTTTTATACTGATCTTYAYKATGRATWT
TTMGTTTGCTTGTAAAAAAACATAAAAAAACCCTACTGAGTTAATCCGGG
AAAACCAT
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