EMLSAG00000006188, EMLSAG00000006188-688954 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000006188 vs. C. finmarchicus
Match: gi|592886495|gb|GAXK01071880.1| (TSA: Calanus finmarchicus comp550687_c0_seq1 transcribed RNA sequence) HSP 1 Score: 70.8626 bits (172), Expect = 1.429e-14 Identity = 37/115 (32.17%), Postives = 67/115 (58.26%), Query Frame = 0 Query: 40 RSATPSP---YDAPPISPSVRRARELNRDIRRGRNFRENSLSRRTPLRSDSVPRPPGTELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSI 151 +SA PS PP+ RR R N++++R R+FR S R + S+ P G + F+IK + G+ GWKIMPE+ + ++L++V+ I++++ +G V+P+R+++ Sbjct: 113 KSAIPSDSPLLTKPPVDSRQRRFRSFNKELKRARSFRA-SRERSSDKASEPTPSLSGQSVSFSIKKYLTGKGGWKIMPEDENISLKMNYLVLEQVLARIRDLQYSGQVVPDRMTL 454
BLAST of EMLSAG00000006188 vs. C. finmarchicus
Match: gi|592836808|gb|GAXK01120736.1| (TSA: Calanus finmarchicus comp162810_c0_seq2 transcribed RNA sequence) HSP 1 Score: 67.3958 bits (163), Expect = 6.208e-13 Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 0 Query: 31 TPLRGLSPSRSATPSPYDAP-----PISPSVRRARELNRDIRRGRNFRE----NSLSRR---TPLRSDSVPRPPGTELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSIR 152 +P R SP+ S +P D+P +SP+++RAR N+D+RR +FR SLSR R+ S R E+ F IK ++G RKGWKI+ ++ E + D LK VV MIK+ME G +P+R++++ Sbjct: 473 SPARPQSPAVSHSPIRPDSPLLCPHTLSPALKRARSFNKDLRRAASFRAARERESLSRNNSPACSRNTSPVRMEKQEISFRIKKALGMRKGWKIIADDGE---MIDGAALKTVVSMIKDMECQGCAVPDRITVK 865
BLAST of EMLSAG00000006188 vs. C. finmarchicus
Match: gi|592920721|gb|GAXK01037654.1| (TSA: Calanus finmarchicus comp363732_c3_seq1 transcribed RNA sequence) HSP 1 Score: 64.6994 bits (156), Expect = 3.853e-12 Identity = 42/135 (31.11%), Postives = 69/135 (51.11%), Query Frame = 0 Query: 28 APGTPLRGLSPSRSATPSPYDAPPI-----SPSVRRARELNRDIRRGRNFRENSLSRRTPLRSDSVPRPP-----GTELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSIR 152 +P + SP R TP P D+P + P ++R R NR +++ +FR +SR V P G E+ F +K S GR GW+IMPE+ + IL +V++ I+ M+ +G V+P+R+ ++ Sbjct: 418 SPQCACQEESPRR--TPVPSDSPLLKKIQKDPIIQRIRSFNRSLKKAHSFR---ISREKSTEPSKVVAEPEVSVAGKEVTFRVKKSTLGRVGWRIMPEDDSLNLKMNQDILNQVLERIRAMQYSGEVVPDRMMVK 807
BLAST of EMLSAG00000006188 vs. C. finmarchicus
Match: gi|592836809|gb|GAXK01120735.1| (TSA: Calanus finmarchicus comp162810_c0_seq1 transcribed RNA sequence) HSP 1 Score: 65.0846 bits (157), Expect = 4.886e-12 Identity = 52/138 (37.68%), Postives = 78/138 (56.52%), Query Frame = 0 Query: 28 APGTPL-RGLSPSRSATPSPYDAP-----PISPSVRRARELNRDIRRGRNFRE----NSLSRR---TPLRSDSVPRPPGTELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSIR 152 +PG R SP+ S +P D+P +SP+++RAR N+D+RR +FR SLSR R+ S R E+ F IK ++G RKGWKI+ ++ E + D LK VV MIK+ME G +P+R++++ Sbjct: 473 SPGKTFSRPQSPAVSRSPIRPDSPLLCPHTLSPALKRARSFNKDLRRAASFRAARERESLSRNNSPACSRNTSPVRMEKQEISFRIKKALGMRKGWKIIADDGE---MIDGAALKTVVSMIKDMECQGCAVPDRITVK 877
BLAST of EMLSAG00000006188 vs. C. finmarchicus
Match: gi|592822946|gb|GAXK01131622.1| (TSA: Calanus finmarchicus comp160412_c0_seq2 transcribed RNA sequence) HSP 1 Score: 65.0846 bits (157), Expect = 6.288e-12 Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 0 Query: 45 SPYDAPPISPSVRRARELNRDIRRGRNFR---ENSLSRR---------TPLRSDSVPRPPG--TELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSIR 152 SP+ A SP+++RA+ N+++RR +FR E S SR+ +P R PG E+ F+IK ++G RKGWKIM ++ S D LK VV+MIK++E G +PER+SI+ Sbjct: 133 SPHTA---SPALKRAKSFNKELRRAASFRAAREKSSSRQNSAVNSRNPSPCREGVNENTPGKEQEVSFSIKRALGSRKGWKIMADDGHS---IDGSALKTVVNMIKDLEFQGFAVPERISIK 480
BLAST of EMLSAG00000006188 vs. C. finmarchicus
Match: gi|592822945|gb|GAXK01131623.1| (TSA: Calanus finmarchicus comp160412_c0_seq3 transcribed RNA sequence) HSP 1 Score: 64.3142 bits (155), Expect = 8.786e-12 Identity = 50/123 (40.65%), Postives = 73/123 (59.35%), Query Frame = 0 Query: 45 SPYDAPPI-SPSVRRARELNRDIRRGRNFR---ENSLSRR---------TPLRSDSVPRPPG--TELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSIR 152 SP +P + SPS++RA+ N+++RR R+FR E S SR+ +P R PG E+ F+IK ++G RKGWKIM ++ S D LK VV+MIK++E G +PER+SI+ Sbjct: 133 SPLLSPHVDSPSLKRAKSFNKELRRARSFRAAREKSSSRQNSAVNSRNPSPCREGVNENTPGKEQEVSFSIKRALGSRKGWKIMADDGHS---IDGSALKTVVNMIKDLEFQGFAVPERISIK 492
BLAST of EMLSAG00000006188 vs. C. finmarchicus
Match: gi|592822947|gb|GAXK01131621.1| (TSA: Calanus finmarchicus comp160412_c0_seq1 transcribed RNA sequence) HSP 1 Score: 64.6994 bits (156), Expect = 8.877e-12 Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 0 Query: 45 SPYDAPPISPSVRRARELNRDIRRGRNFR---ENSLSRR---------TPLRSDSVPRPPG--TELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSIR 152 SP+ A SP+++RA+ N+++RR +FR E S SR+ +P R PG E+ F+IK ++G RKGWKIM ++ S D LK VV+MIK++E G +PER+SI+ Sbjct: 133 SPHTA---SPALKRAKSFNKELRRAASFRAAREKSSSRQNSAVNSRNPSPCREGVNENTPGKEQEVSFSIKRALGSRKGWKIMADDGHS---IDGSALKTVVNMIKDLEFQGFAVPERISIK 480
BLAST of EMLSAG00000006188 vs. C. finmarchicus
Match: gi|592822943|gb|GAXK01131625.1| (TSA: Calanus finmarchicus comp160412_c0_seq5 transcribed RNA sequence) HSP 1 Score: 60.8474 bits (146), Expect = 1.411e-11 Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 0 Query: 95 ELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSIR 152 E+ F+IK ++G RKGWKIM ++ S D LK VV+MIK++E G +PER+SI+ Sbjct: 133 EVSFSIKRALGSRKGWKIMADDGHS---IDGSALKTVVNMIKDLEFQGFAVPERISIK 297
BLAST of EMLSAG00000006188 vs. C. finmarchicus
Match: gi|592822944|gb|GAXK01131624.1| (TSA: Calanus finmarchicus comp160412_c0_seq4 transcribed RNA sequence) HSP 1 Score: 59.6918 bits (143), Expect = 4.278e-11 Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 0 Query: 95 ELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSIR 152 E+ F+IK ++G RKGWKI+ ++ S D LK VV+MIK++E G +PER+SI+ Sbjct: 133 EVSFSIKRALGARKGWKIIADDGHS---IDGSALKTVVNMIKDLEFQGFAVPERISIK 297
BLAST of EMLSAG00000006188 vs. C. finmarchicus
Match: gi|592756980|gb|GAXK01197433.1| (TSA: Calanus finmarchicus comp344846_c0_seq1 transcribed RNA sequence) HSP 1 Score: 53.9138 bits (128), Expect = 2.136e-8 Identity = 36/120 (30.00%), Postives = 65/120 (54.17%), Query Frame = 0 Query: 39 SRSATPSPYDAPPIS-PSVRRAREL---NRDIRRGRNFR---ENSLSRRTPLRSDSVPRPPGTELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSI 151 S S TP P ++P ++ PS+ + + ++ RR R FR E + + +D G E+ F I+ S+ GR GWKIMPE+ + + +++V+ I++++ +G VIP +S+ Sbjct: 115 STSKTPIPANSPLLTQPSLSKISSIPSYSKTARRARTFRAGREKVEKKVEQVGTDLT----GQEVTFKIRKSMSGRIGWKIMPEDETLNLLMNRCCVEQVMQRIRDLQYSGQVIPSSISL 462
BLAST of EMLSAG00000006188 vs. L. salmonis peptides
Match: EMLSAP00000006188 (pep:novel supercontig:LSalAtl2s:LSalAtl2s338:105537:116654:-1 gene:EMLSAG00000006188 transcript:EMLSAT00000006188 description:"maker-LSalAtl2s338-snap-gene-1.12") HSP 1 Score: 320.857 bits (821), Expect = 6.244e-113 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 Query: 1 MSINNKLRLNITLEGSRTPNYVSPCNSAPGTPLRGLSPSRSATPSPYDAPPISPSVRRARELNRDIRRGRNFRENSLSRRTPLRSDSVPRPPGTELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSIRKVVSRQMVTSTGK 165 MSINNKLRLNITLEGSRTPNYVSPCNSAPGTPLRGLSPSRSATPSPYDAPPISPSVRRARELNRDIRRGRNFRENSLSRRTPLRSDSVPRPPGTELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSIRKVVSRQMVTSTGK Sbjct: 1 MSINNKLRLNITLEGSRTPNYVSPCNSAPGTPLRGLSPSRSATPSPYDAPPISPSVRRARELNRDIRRGRNFRENSLSRRTPLRSDSVPRPPGTELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSIRKVVSRQMVTSTGK 165
BLAST of EMLSAG00000006188 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold15_size728074-snap-gene-1.12 (protein:Tk08842 transcript:maker-scaffold15_size728074-snap-gene-1.12-mRNA-1 annotation:"hypothetical protein PPL_07323") HSP 1 Score: 81.2629 bits (199), Expect = 5.713e-19 Identity = 64/153 (41.83%), Postives = 82/153 (53.59%), Query Frame = 0 Query: 17 RTPNYVSPCNSAPGTPLRGLSPSRSATPSPYDAP-----PISPSVRRARELNRDIRRGRNF-------RENSLSR-RTPLRSDSVPRPPGT-----ELXFTIKPSIGGRKGWKIMPEETESEPITDPVILKRVVDMIKEMEMNGSVIPERLSI 151 R+PN C S R S RSA P P D+P P SP +AREL R++RR R+F RE S SR + + +PP E+ F+I+ + G RKGWKIMPE + I P LK+VV MIK+ME+ G IPER+SI Sbjct: 253 RSPNLKLNCKS------RDNSKGRSA-PLPPDSPLLCRTPPSPMALKARELKRELRRARSFHRSLERSREGSCSRYESDDEASDGSQPPAMRTKPEEVSFSIRKNSGNRKGWKIMPEVGQ---IIKPEALKKVVAMIKDMEVKGHDIPERISI 395 The following BLAST results are available for this feature:
BLAST of EMLSAG00000006188 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000006188 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000006188 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000006188 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000006188 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000006188 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000006188 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s338:105537..116654- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000006188-688954 ID=EMLSAG00000006188-688954|Name=EMLSAG00000006188|organism=Lepeophtheirus salmonis|type=gene|length=11118bp|location=Sequence derived from alignment at LSalAtl2s338:105537..116654- (Lepeophtheirus salmonis)back to top Add to Basket
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