EMLSAG00000009399, EMLSAG00000009399-692165 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592814813|gb|GAXK01139755.1| (TSA: Calanus finmarchicus comp529044_c1_seq3 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 1.729e-2 Identity = 21/53 (39.62%), Postives = 35/53 (66.04%), Query Frame = 0 Query: 4 WLIFNVLFIIGLYXXXXXXXXLXHPLINKLWGLIPAVVGFIYIYFWVKVWELY 56 WL+F++L +I L++ ++FV+ L KL G+IP +V +Y W KV+EL+ Sbjct: 431 WLLFHLLVLIILFITSIILFVVQISLW-KLVGIIPVMVAIFSMYCWAKVYELF 586
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592814814|gb|GAXK01139754.1| (TSA: Calanus finmarchicus comp529044_c1_seq2 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 4.491e-2 Identity = 19/56 (33.93%), Postives = 35/56 (62.50%), Query Frame = 0 Query: 1 MLPWLIFNVLFIIGLYXXXXXXXXLXHPLINKLWGLIPAVVGFIYIYFWVKVWELY 56 ++ WLI + L ++ L++ ++F++ L KL G+IP +V +Y W KV+EL+ Sbjct: 431 LMHWLILHFLSLVFLFITSILLFIVQISLW-KLVGIIPVMVAIFSMYCWAKVYELF 595
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592841946|gb|GAXK01115598.1| (TSA: Calanus finmarchicus comp3605434_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 8.786e-2 Identity = 17/60 (28.33%), Postives = 35/60 (58.33%), Query Frame = 0 Query: 1 MLPWLIFNVLFIIGLYXXXXXXXXLXHPLINK------LWGLIPAVVGFIYIYFWVKVWE 54 +LPWL+F++L I + + + +L H +INK +P + G ++++ W+KV++ Sbjct: 203 ILPWLVFHLLVI--MIMVIGGMALLLHFIINKKEFKRAAMCSLPLITGIMFMFIWMKVYQ 376
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592782694|gb|GAXK01171874.1| (TSA: Calanus finmarchicus comp62957_c0_seq88 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 6.488e-1 Identity = 15/55 (27.27%), Postives = 24/55 (43.64%), Query Frame = 0 Query: 33 LWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNLAMVEQMYNSNKQVNYSQRAG 87 L ++P +V K EL KWKNS ++ + V Y+ QV+ + Sbjct: 240 LTPIVPCLVILKVSTIMAKKEELVEKWKNSCPESASTVATAYDDEIQVSMKTDSS 404
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592782702|gb|GAXK01171866.1| (TSA: Calanus finmarchicus comp62957_c0_seq80 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 6.776e-1 Identity = 15/55 (27.27%), Postives = 24/55 (43.64%), Query Frame = 0 Query: 33 LWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNLAMVEQMYNSNKQVNYSQRAG 87 L ++P +V K EL KWKNS ++ + V Y+ QV+ + Sbjct: 367 LTPIVPCLVILKVSTIMAKKEELVEKWKNSCPESASTVATAYDDEIQVSMKTDSS 531
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592782701|gb|GAXK01171867.1| (TSA: Calanus finmarchicus comp62957_c0_seq81 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 6.815e-1 Identity = 15/55 (27.27%), Postives = 24/55 (43.64%), Query Frame = 0 Query: 33 LWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNLAMVEQMYNSNKQVNYSQRAG 87 L ++P +V K EL KWKNS ++ + V Y+ QV+ + Sbjct: 355 LTPIVPCLVILKVSTIMAKKEELVEKWKNSCPESASTVATAYDDEIQVSMKTDSS 519
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592848769|gb|GAXK01108775.1| (TSA: Calanus finmarchicus comp296585_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 7.957e-1 Identity = 16/51 (31.37%), Postives = 26/51 (50.98%), Query Frame = 0 Query: 46 IYFWV-KVWELYR----KWKNSIKQNLAMVEQMYNSNKQVNYSQRAGGTSW 91 IY W+ ++ Y KWKNSI+ NL++ + K +Q++ G W Sbjct: 406 IYNWICTLYPFYSVTDDKWKNSIRHNLSLYPEFVKGEK----TQQSAGHLW 546
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592846637|gb|GAXK01110907.1| (TSA: Calanus finmarchicus comp331293_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 9.074e-1 Identity = 17/68 (25.00%), Postives = 36/68 (52.94%), Query Frame = 0 Query: 1 MLPWLIFNVLFII-----GLYXXXXXXXXLXHPLIN-KLWGLIPAVVGFIYIYFWVKVWELYRKWKNS 62 +LPWL+++V+ I+ G+Y+ + ++ ++ + P + G I+ WV V +LY + K + Sbjct: 204 LLPWLVWHVVMILGCIGSGVYLVIYFLVLVEERAVDMAVVSAGPVLAGIFLIFLWVLVDQLYIQLKQT 407
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592837834|gb|GAXK01119710.1| (TSA: Calanus finmarchicus comp3038390_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 1.236e+0 Identity = 20/71 (28.17%), Postives = 37/71 (52.11%), Query Frame = 0 Query: 1 MLPWLIFNVLFIIGLYXXXXXXXXLXHPLINK------LWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQ 65 ++PWL F++L + + + + + H INK LIP + G ++++ W+KV+ +K K KQ Sbjct: 629 IIPWLAFHLL--AAILMILSGIAFVLHFTINKKQFMRAALCLIPILTGLMFLFIWMKVYREMQKTKFKEKQ 835
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592895102|gb|GAXK01063273.1| (TSA: Calanus finmarchicus comp809067_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 2.288e+0 Identity = 19/68 (27.94%), Postives = 36/68 (52.94%), Query Frame = 0 Query: 1 MLPWLIFNVLFIIG-LYXXXXXXXXLXHPLINKLWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNL 67 +LPWLI I+ L + ++ +L + + L+ V I I FW +++LYR+ K S ++++ Sbjct: 432 LLPWLIVYFTSIVSTLSLLVYILVILQNIWFRVILFLLVIPVEVIAISFWSAIFKLYRRIKTSQRKHI 635
BLAST of EMLSAG00000009399 vs. L. salmonis peptides
Match: EMLSAP00000009399 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5:507237:507909:1 gene:EMLSAG00000009399 transcript:EMLSAT00000009399 description:"maker-LSalAtl2s5-augustus-gene-5.10") HSP 1 Score: 177.178 bits (448), Expect = 1.400e-58 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 Query: 1 MLPWLIFNVLFIIGLYVAXAVVFVLXHPLINKLWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNLAMVEQMYNSNKQVNYSQRAGGTSW 91 MLPWLIFNVLFIIGLYVAXAVVFVLXHPLINKLWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNLAMVEQMYNSNKQVNYSQRAGGTSW Sbjct: 1 MLPWLIFNVLFIIGLYVAXAVVFVLXHPLINKLWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNLAMVEQMYNSNKQVNYSQRAGGTSW 91 The following BLAST results are available for this feature:
BLAST of EMLSAG00000009399 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 10
BLAST of EMLSAG00000009399 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000009399 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000009399 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000009399 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000009399 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s5:507237..507909+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000009399-692165 ID=EMLSAG00000009399-692165|Name=EMLSAG00000009399|organism=Lepeophtheirus salmonis|type=gene|length=673bp|location=Sequence derived from alignment at LSalAtl2s5:507237..507909+ (Lepeophtheirus salmonis)back to top Add to Basket
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