EMLSAG00000010561, EMLSAG00000010561-693327 (gene) Lepeophtheirus salmonis
|
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000010561 vs. C. finmarchicus
Match: gi|592930197|gb|GAXK01028348.1| (TSA: Calanus finmarchicus comp2974903_c0_seq1 transcribed RNA sequence) HSP 1 Score: 174.096 bits (440), Expect = 1.925e-49 Identity = 99/254 (38.98%), Postives = 144/254 (56.69%), Query Frame = 0
Query: 17 KKLPNEKKIWFLRMLKRFIYVFXXXXXXXXXXXQSAQCLAKYLDHPTYMSSTIVDQTESEFPALTVCPNIKGYKPEVLAANGFAEEADYNDAVDGRKIRWTSNNSDVSPLQLYDTASYTLNELVGQFYIRYF-CKIAGIFGKEIPVRQDNPR--MFTEQRHRSYGKCYTIYPGYQLKVKERAVYYMHLKFKEPILFYLHKTGQFLDLSGRMAYHVNIGERIETQVNYQDARML---IKTKPNGLKTCSNDDYDT 264
+K+ + KI L++LK+ Y+ +ILL Q CL KY PTY+SS I DQ ++EFP +T C N GYKPEVL NG E Y+ + W S NS VSP L+ TA+Y++++L+ FYIR +G FG P+ + P M+ EQRHR +G+C++ YPG K+K +YY L K+ + Y+H GQFLDL+GRM + + Q+N+ +ML +K++ +G K + YDT
Sbjct: 153 RKMNLKTKISALQVLKKLQYITFFSVCAVILLSQIYNCLLKYFSVPTYISSYITDQNKAEFPEITFCKNGNGYKPEVLKQNGIEEATQYSGQ---KNHTWISTNSTVSPQSLFKTATYSVSDLIESFYIRTINADSSGTFGFNPPLDRSEPNHLMWREQRHRGFGRCHSAYPGK--KLKNLMIYYTKLTLKQSVKIYIHHEGQFLDLNGRMGIKAMPNTKTQMQINWLHVKMLDQALKSQQSGFKCNGSVPYDT 899
BLAST of EMLSAG00000010561 vs. C. finmarchicus
Match: gi|592838164|gb|GAXK01119380.1| (TSA: Calanus finmarchicus comp2498093_c0_seq1 transcribed RNA sequence) HSP 1 Score: 159.844 bits (403), Expect = 5.293e-44 Identity = 95/246 (38.62%), Postives = 141/246 (57.32%), Query Frame = 0
Query: 24 KIWFLRMLKRFIYVFXXXXXXXXXXXQSAQCLAKYLDHPTYMSSTIVDQTESEFPALTVCPNIKGYKPEVLAANGFAEEADYNDAVDGRKIRWTSNNSDVSPLQLYDTASYTLNELVGQFYIRYF-CKIAGIFGKEIPVRQ--DNPRMFTEQRHRSYGKCYTIYPGYQLKVKERAVYYMHLKFKEPILFYLHKTGQFLDLSGRMAYHVNIGERIETQVNYQDARML---IKTKPNGLKTCSNDDYD 263
K+ L+M+K Y F+L TL+LL+Q CL KY+ PTY+SS I +Q ++EFP +T C N + YK VL NG +E Y+ + W S NS V+P L+ A+Y+ EL+ YIR G FG P+ + +N ++ E RHR +G+C++ YPG K+K+ VYY + K+ + YLH GQFLDL+GRM +G +I+ Q+N+Q +ML +K+ +G K + YD
Sbjct: 742 KVLILQMIKNLQYSFILGICTLVLLIQVYMCLDKYVSVPTYISSYITEQNKAEFPEITFCKNEESYKHSVLKPNGIPDEQHYSGTENH---DWVSRNSLVTPQALFSKATYSATELIDNLYIRTIKADSHGDFGFIAPLNRSDENFMIWRENRHRGFGRCHSAYPGQ--KLKQLMVYYAKISLKDSVKMYLHHEGQFLDLNGRMGIKALLGSKIQMQINWQHVKMLDQSVKSVKSGYKCNGSIAYD 1464
BLAST of EMLSAG00000010561 vs. C. finmarchicus
Match: gi|592930196|gb|GAXK01028349.1| (TSA: Calanus finmarchicus comp2974903_c0_seq2 transcribed RNA sequence) HSP 1 Score: 102.449 bits (254), Expect = 3.543e-25 Identity = 62/150 (41.33%), Postives = 85/150 (56.67%), Query Frame = 0
Query: 17 KKLPNEKKIWFLRMLKRFIYVFXXXXXXXXXXXQSAQCLAKYLDHPTYMSSTIVDQTESEFPALTVCPNIKGYKPEVLAANGFAEEADYNDAVDGRKIRWTSNNSDVSPLQLYDTASYTLNELVGQFYIRYF-CKIAGIFGKEIPV-RQD 164
+K+ + KI L++LK+ Y+ +ILL Q CL KY PTY+SS I DQ ++EFP +T C N GYKPEVL NG E Y+ + W S NS VSP L+ TA+Y++++L+ FYIR +G FG P+ R D
Sbjct: 153 RKMNLKTKISALQVLKKLQYITFFSVCAVILLSQIYNCLLKYFSVPTYISSYITDQNKAEFPEITFCKNGNGYKPEVLKQNGIEEATQYSGQ---KNHTWISTNSTVSPQSLFKTATYSVSDLIESFYIRTINADSSGTFGFNPPIDRSD 593
BLAST of EMLSAG00000010561 vs. C. finmarchicus
Match: gi|592795176|gb|GAXK01159392.1| (TSA: Calanus finmarchicus comp4827185_c0_seq1 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 2.618e-5 Identity = 27/88 (30.68%), Postives = 45/88 (51.14%), Query Frame = 0
Query: 53 QCLAKYLDHPTYMSSTIVDQTESEFPALTVCPNIKGYKPEVLAANGFAEEADYNDAVDGRKIRWTSNNSDVSPLQLYDTASYTLNELV 140
+C+ KYL T + + FP L++CP+ YK +VL +NG +++ Y K W SN +P++L++ YT +LV
Sbjct: 79 ECVDKYLSGNTATADKYQHIITAPFPDLSICPSYP-YKLDVLKSNGIPDKSTYQ-----FKAGWVSNIKTKTPVELFNEVIYTAEDLV 324
BLAST of EMLSAG00000010561 vs. C. finmarchicus
Match: gi|592869612|gb|GAXK01087950.1| (TSA: Calanus finmarchicus comp4595556_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 4.190e-1 Identity = 14/42 (33.33%), Postives = 23/42 (54.76%), Query Frame = 0
Query: 177 YGKCYTIYPGYQLKVKERAVYYMHLKFKEPILFYLHKTGQFL 218
+GKC+T+Y + L V+ + ++ L K P +LH FL
Sbjct: 233 FGKCHTMYEPHLLGVRNKDAMFIVLNTKLPYRIFLHDPSLFL 358
BLAST of EMLSAG00000010561 vs. C. finmarchicus
Match: gi|592773953|gb|GAXK01180615.1| (TSA: Calanus finmarchicus comp6336892_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 5.931e-1 Identity = 12/34 (35.29%), Postives = 23/34 (67.65%), Query Frame = 0
Query: 50 QSAQCLAKYLDHPTYMSSTIVDQTESEFPALTVC 83
Q + + KYL T + ST+V++ E ++P+++VC
Sbjct: 99 QISLSIQKYLKRSTILQSTLVEEEEVQYPSISVC 200
BLAST of EMLSAG00000010561 vs. C. finmarchicus
Match: gi|592886328|gb|GAXK01072047.1| (TSA: Calanus finmarchicus comp2749449_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 2.469e+0 Identity = 17/44 (38.64%), Postives = 24/44 (54.55%), Query Frame = 0
Query: 55 LAKYLDHPTYMSSTIVDQT--ESEFPALTVCPNIKGYKPEVLAA 96
+ KYL++PT S D + +FP +T+CPN K K AA
Sbjct: 115 IEKYLNNPTSTSLDTRDHPVWKIDFPGITICPNTKIMKSNFRAA 246
BLAST of EMLSAG00000010561 vs. C. finmarchicus
Match: gi|592923133|gb|GAXK01035256.1| (TSA: Calanus finmarchicus comp1516601_c0_seq2 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 3.262e+0 Identity = 11/31 (35.48%), Postives = 22/31 (70.97%), Query Frame = 0
Query: 53 QCLAKYLDHPTYMSSTIVDQTESEFPALTVC 83
Q + +YLD+P +S+T+ + +FP++T+C
Sbjct: 346 QLVDEYLDYPVDVSTTLEHENAIDFPSVTIC 438
BLAST of EMLSAG00000010561 vs. C. finmarchicus
Match: gi|592923134|gb|GAXK01035255.1| (TSA: Calanus finmarchicus comp1516601_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 3.560e+0 Identity = 11/31 (35.48%), Postives = 22/31 (70.97%), Query Frame = 0
Query: 53 QCLAKYLDHPTYMSSTIVDQTESEFPALTVC 83
Q + +YLD+P +S+T+ + +FP++T+C
Sbjct: 346 QLVDEYLDYPVDVSTTLEHENAIDFPSVTIC 438
BLAST of EMLSAG00000010561 vs. L. salmonis peptides
Match: EMLSAP00000010561 (pep:novel supercontig:LSalAtl2s:LSalAtl2s700:43962:85210:-1 gene:EMLSAG00000010561 transcript:EMLSAT00000010561 description:"augustus_masked-LSalAtl2s700-processed-gene-0.0") HSP 1 Score: 554.673 bits (1428), Expect = 0.000e+0 Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
Query: 1 MGDSSKVLSKDWTAPPKKLPNEKKIWFLRMLKRFIYVFLLFGLTLILLLQSAQCLAKYLDHPTYMSSTIVDQTESEFPALTVCPNIKGYKPEVLAANGFAEEADYNDAVDGRKIRWTSNNSDVSPLQLYDTASYTLNELVGQFYIRYFCKIAGIFGKEIPVRQDNPRMFTEQRHRSYGKCYTIYPGYQLKVKERAVYYMHLKFKEPILFYLHKTGQFLDLSGRMAYHVNIGERIETQVNYQDARMLIKTKPNGLKTCSNDDYDT 264
MGDSSKVLSKDWTAPPKKLPNEKKIWFLRMLKRFIYVFLLFGLTLILLLQSAQCLAKYLDHPTYMSSTIVDQTESEFPALTVCPNIKGYKPEVLAANGFAEEADYNDAVDGRKIRWTSNNSDVSPLQLYDTASYTLNELVGQFYIRYFCKIAGIFGKEIPVRQDNPRMFTEQRHRSYGKCYTIYPGYQLKVKERAVYYMHLKFKEPILFYLHKTGQFLDLSGRMAYHVNIGERIETQVNYQDARMLIKTKPNGLKTCSNDDYDT
Sbjct: 1 MGDSSKVLSKDWTAPPKKLPNEKKIWFLRMLKRFIYVFLLFGLTLILLLQSAQCLAKYLDHPTYMSSTIVDQTESEFPALTVCPNIKGYKPEVLAANGFAEEADYNDAVDGRKIRWTSNNSDVSPLQLYDTASYTLNELVGQFYIRYFCKIAGIFGKEIPVRQDNPRMFTEQRHRSYGKCYTIYPGYQLKVKERAVYYMHLKFKEPILFYLHKTGQFLDLSGRMAYHVNIGERIETQVNYQDARMLIKTKPNGLKTCSNDDYDT 264
BLAST of EMLSAG00000010561 vs. L. salmonis peptides
Match: EMLSAP00000008505 (pep:novel supercontig:LSalAtl2s:LSalAtl2s524:148477:156092:1 gene:EMLSAG00000008505 transcript:EMLSAT00000008505 description:"maker-LSalAtl2s524-augustus-gene-1.36") HSP 1 Score: 149.443 bits (376), Expect = 6.109e-42 Identity = 88/244 (36.07%), Postives = 133/244 (54.51%), Query Frame = 0
Query: 5 SKVLSKDWTAPPKKLPNEKKIWFLRMLKRFIYVFLLFGLTLILLLQSAQCLAKYLDHPTYMSSTIVDQTESEFPALTVCPNIKGYKPEVLAANGFAEEADYNDAVDGRKIRWTSNNSDVSPLQLYDTASYTLNELVGQFYIRYFCKIAGIFGKEIPVRQDNPRMFTEQRHRSYGKCYTIYPGYQLKVKERAVYYMHLKFKEPILFYLHKTGQFLDLSGRMAYHVNIGERIETQVNYQDARMLIK 248
SKV + +AP +I L +LK I + L L++Q + L KY + PTY+S+ I + +++FPA+T+CPN Y L +GF DYNDA +GR I WTSN + +SP L++ + + E++ I I G I + + + + HR +G+C+T YP + + R + + + FK + Y+H+ QFLDLSGRM Y VN+GE ETQ+NYQD +ML K
Sbjct: 4 SKVTGDEGSAP--------QIRRLYVLKIIITTIIGLVLLATLVVQMVKILTKYSEGPTYISTIIDHKKKAKFPAITICPNNVMYNTSRLKEHGFESAKDYNDARNGRLISWTSNTT-LSPWDLFNYITMSSEEIIDSI-ILDVSHIRDGEGDSIVLNGSDSSL-NAKGHRKFGRCWTFYP--EENFRTRGINSVKMNFKADVKLYIHRNHQFLDLSGRMGYKVNLGEGHETQINYQDMKMLEK 234
BLAST of EMLSAG00000010561 vs. L. salmonis peptides
Match: EMLSAP00000008517 (pep:novel supercontig:LSalAtl2s:LSalAtl2s524:54349:80630:-1 gene:EMLSAG00000008517 transcript:EMLSAT00000008517 description:"maker-LSalAtl2s524-augustus-gene-0.18") HSP 1 Score: 149.058 bits (375), Expect = 3.441e-40 Identity = 91/257 (35.41%), Postives = 139/257 (54.09%), Query Frame = 0
Query: 16 PKKLPNE-KKIWFLRMLKRFIYVFLLFGLTLILLLQSAQCLAKYLDHPTYMSSTIVDQTESEFPALTVCPNIKGYKPEVLAANGFAEEADYNDAVDGRKIR-WTSNNSDVSPLQLYDTASYTLNELVGQFYIRYFCKIAGIFGKEIPVR------QDNPRMFTEQRHRSYGKCYTIYPGYQLKVKERAVYYMHLKFKEPILFYLHKTGQFLDLSGRMAYHVNIGERIETQVNYQDARMLIK-TKPNGLKTCSNDDYD 263
P+++P++ KK+ FL + I +LF +IL Q + L KY + PTY+S+ + Q+++EFPA+T+CPN + Y L +G +YN R W SN S+ SP L+D +++ +L+ +R F + P R + + H +GKC+TIYP +++ +YYM + + P+ YLH+ GQFLDLSGRM Y V IGER E+Q++Y+D RML K K G C +YD
Sbjct: 10 PREIPSKIKKLQFLXLSIXAIIGLVLF---IILFNQIIRILIKYSEGPTYISTLVARQSDAEFPAITMCPNEEMYNLTRLREHGINSTDNYNGGAXRXATRTWLSNQSNTSPRALFDYITFSAKDLIRTVKVRTF--------EAHPERGFLVYLNVSSSTIKKNPHLKFGKCWTIYPDKW--IRDLGIYYMMFQLQLPVEIYLHQMGQFLDLSGRMGYKVVIGERHESQISYRDMRMLEKPDKGEGSFVCRTINYD 253
BLAST of EMLSAG00000010561 vs. L. salmonis peptides
Match: EMLSAP00000001836 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1318:49949:51329:-1 gene:EMLSAG00000001836 transcript:EMLSAT00000001836 description:"maker-LSalAtl2s1318-snap-gene-0.21") HSP 1 Score: 139.428 bits (350), Expect = 5.042e-39 Identity = 72/226 (31.86%), Postives = 125/226 (55.31%), Query Frame = 0
Query: 48 LLQSAQCLAKYLDHPTYMSSTIVDQTESEFPALTVCPNIKGYKPEVLAANGFAEEADYNDAVDGRKIRWTSNNSDVSPLQLYDTASYTLNELVGQFYIRYF--CKIAGIFGKEIPVRQDNPRMFTEQRHRSYGKCYTIYPGYQLKVKERAVYYMHLKFKEPILFYLHKTGQFLDLSGRMAYHVNIGERIETQVNYQDARMLIKTKPNG--------LKTCSNDDYD 263
++Q +QCL K++D PTYM ++I Q ES FPA++VC + + Y+ +VL NGF+ EADY+ + W SNNS SP +LY+ + +++ + + F I G+ I +P + EQRH+ YGKCYTIYP L+ + +H+ FK P ++H GQF++++ + ++ +E Q+ +++ +++ K+K +CS + +D
Sbjct: 1 MIQVSQCLIKFIDAPTYMKTSIHSQIESTFPAISVCSSERKYRAQVLVENGFSSEADYDAS-------WMSNNSFKSPEELYEDLTLRPDDVFSEISMDLFRPHPITGLSISSINTSNKDPSLM-EQRHKEYGKCYTIYPSRTLRA--LGINNIHMSFKIPTRIFIHPEGQFMNVNTHIVINMEPNSLVENQITFEEFKLIDKSKETNPFRNFFDQSMSCSQEKFD 216
BLAST of EMLSAG00000010561 vs. L. salmonis peptides
Match: EMLSAP00000006377 (pep:novel supercontig:LSalAtl2s:LSalAtl2s34:427505:445052:-1 gene:EMLSAG00000006377 transcript:EMLSAT00000006377 description:"maker-LSalAtl2s34-augustus-gene-4.26") HSP 1 Score: 94.7449 bits (234), Expect = 9.095e-23 Identity = 63/203 (31.03%), Postives = 100/203 (49.26%), Query Frame = 0
Query: 68 TIVDQTESEFPALTVCPNIKGYKPEVLAANGFAEEADYNDAVDGRKIRWTSNNSDVSPLQLYD-----TASYTLNELVGQFYIRYFCKIAGIFGKEIPVRQDNPRMFTEQRHRSYGKCYTIYPGYQLKVKERAVYYMHLKFKEPILFYLHKTGQFLDLSGRMAYHVNIGERIETQVNYQDARMLIKTKPNGLK--TCSNDDYD 263
+V+Q EFPA+++CP YK +VL + DYN G + T ++ Y ++ L++L+ IR + + I + N + + E+ HR +GKCY++ + +R +YY+ +K K+ I Y+H QFLDLSGRM Y + +GE + QVNYQ +I T P G CS + +D
Sbjct: 13 AVVNQYNGEFPAISICPWDPYYKVDVL-------KEDYNLTSVGHFNKMTEKQENLIWHNKYGQDIICNITFHLDDLLSDLKIRALRTLNDTLSQTIHPKIQNLK-YKEKLHRKFGKCYSL--NLSNETGDRGIYYVKMKLKKNIKLYIHADDQFLDLSGRMGYEIRLGETTKAQVNYQ----VINTIPGGTNRFNCSYNSFD 201
BLAST of EMLSAG00000010561 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold294_size218657-processed-gene-1.0 (protein:Tk10438 transcript:snap_masked-scaffold294_size218657-processed-gene-1.0-mRNA-1 annotation:"t-complex protein 1 subunit beta") HSP 1 Score: 151.754 bits (382), Expect = 7.800e-42 Identity = 93/249 (37.35%), Postives = 140/249 (56.22%), Query Frame = 0
Query: 20 PNEKKIWFLRMLKRFIYVFLLFGLTLILLLQSAQCLAKYLDHPTYMSSTIVDQTESEFPALTVCPNIKGYKPEVLAANGFAEEADYNDAVDGRKIRWTSNNSDVSPLQLYDTASYTLNELVGQFYIRYFCKIAGIFGKEIPVRQDNPRMFTEQRHRSYGKCYTIYPGYQLKVKERAVYYMHLKFKEPILFYLHKTGQFLDLSGRMAYHVNIGERIETQVNYQDARMLIK-----TKPNGLKTCSNDDYD 263
P K + +L+++ + I+ L L L+LL+QS +C+ KYL+ PTY S+ IV Q +++FPALT+C + GYK EVL A+G YN + ++W+SN+S+VSP +L+ A+ EL+ +F +R + G+ + T Q HR +G+CYT YP +K +YY+ ++ + YLHK GQFLD +GRM Y + E QVN++D R L K +P KTC N YD
Sbjct: 920 PTPKALGYLKVIHKTIFWITLCCLILLLLVQSGRCVMKYLEEPTYFSTHIVPQRDADFPALTICASKSGYKDEVLRAHGIEGVKRYNFK---KNLQWSSNHSNVSPSELFTLATLNHTELIKRFSVRLLKQDH--MGRSLRRLTLANGALTTQYHRGFGRCYTWYPPE--AIKRYGIYYITIRMRVEGKVYLHKNGQFLDFNGRMGYLASPNEAYYFQVNFEDLRTLAKEDFGHEQPQ--KTCLNTHYD 1159 The following BLAST results are available for this feature:
BLAST of EMLSAG00000010561 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000010561 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 9
BLAST of EMLSAG00000010561 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000010561 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000010561 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000010561 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000010561 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s700:43962..85210- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000010561-693327 ID=EMLSAG00000010561-693327|Name=EMLSAG00000010561|organism=Lepeophtheirus salmonis|type=gene|length=41249bp|location=Sequence derived from alignment at LSalAtl2s700:43962..85210- (Lepeophtheirus salmonis)back to top Add to Basket
|