EMLSAT00000009319, EMLSAT00000009319-705166 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000009319
Unique NameEMLSAT00000009319-705166
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
NAE F135 LsBDH2 unknown
  1. Nauplius I
  2. Copepodid
 no phenotype
no visible phenotype 		12.06.2014 - 00:00
20.06.2014 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s595supercontigLSalAtl2s595:50362..51363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000009319 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000009319EMLSAG00000009319-692085Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000041355EMLSAE00000041355-750283Lepeophtheirus salmonisexon
EMLSAE00000041356EMLSAE00000041356-750284Lepeophtheirus salmonisexon
EMLSAE00000041357EMLSAE00000041357-750285Lepeophtheirus salmonisexon
EMLSAE00000041358EMLSAE00000041358-750286Lepeophtheirus salmonisexon
EMLSAE00000041359EMLSAE00000041359-750287Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto770657auto770657Lepeophtheirus salmonispolypeptide
EMLSAP00000009319EMLSAP00000009319Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000009319

>EMLSAP00000009319 ID=EMLSAP00000009319|Name=EMLSAP00000009319|organism=Lepeophtheirus salmonis|type=polypeptide|length=247bp
MGRLDGKVALITAAAQGIGRETALLFAKEGAKVYATDINEALLKELSNHE
GISIFKLDVTNKEDVMNAKDSITESIDILFNCAGYVHHGSILDCDEDSWK
RSFEINVDSMYYMCKAIVPSMIENKKGGSIINMSSICSSIKGLPNRFAYG
TTKAAVIGFTKSLACDLVKHNIRVNCICPGTVDTPSLRGRVNNTPNPEKT
YTDFINRQPMQRLGTSTEIASFVLTLAEDNGAYCTGGDYKIDGGLSI
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mRNA from alignment at LSalAtl2s595:50362..51363-

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000009319-705166 ID=EMLSAT00000009319-705166|Name=EMLSAT00000009319|organism=Lepeophtheirus salmonis|type=mRNA|length=1002bp|location=Sequence derived from alignment at LSalAtl2s595:50362..51363- (Lepeophtheirus salmonis)
TTTCTTTCAAAAATGGGTCGATTAGATGGTAAAGTAGCACTCATCACTGC
TGCGGCTCAAGGAATTGGTCGTGAAACAGCTCTACTCTTTGCAAAGGAAG
GAGCGAAGGTCTACGCAACAGATATAAACGAAGCTCTACTCAAGGAGTTG
TCTAATCATGAGGGTATATCCATTTTCAAATTAGATGTGACTAATAAGGA
AGATGTAATGAATGCCAAGGACTCCATTACTGAGAGCATTGATATACTCT
TTAACTGTGCTGGGTAAAAGTCAGGATTTTAATCCCTTGTGGGTCCTATG
TTCAAATAATAACTTATTCCATGCTACTAGATACGTGCACCATGGAAGTA
TATTGGACTGTGATGAAGACTCATGGAAGCGTAGCTTTGAAATAAATGTA
GATAGCATGTATTACATGTGTAAAGCCATTGTTCCCTCCGTAATGTATCA
TCATAGTTATAACTCGTAACATTTTTAATTCTAATCCATGTTTGATTTAT
AGATGATTGAGAATAAGAAGGGTGGAAGTATAATAAATATGTCCTCCATT
TGCTCATCCATCAAAGGTCTCCCAAATCGTTTTGCATATGGAACAACCAA
AGCTGCAGTAATTGGATTTACTAAATCCCTAGCATGTGATCTTGTTAAGC
ACAACATCAGAGTCAACTGCATTTGTCCAGGAACAGTGGATACACCGTCA
TTGAGGTATTTGAAAAAGTATTAAAAGATTTACCAATAATTCAAACGTTT
TGACTTCATCAGAGGCCGAGTTAATAATACTCCTAACCCAGAGAAAACAT
ACACGGATTTTATCAATCGCCAGCCCATGCAACGACTAGGAACTTCCACA
GAAATTGCCAGTTTCGTCCTTACTCTGGCAGAAGACAATGTATTTATGAA
AGACAAGTTTATTAGTACATTTATTTATGTATATTATAATTTCTTTAGGG
AGCGTATTGTACTGGAGGAGACTATAAAATTGATGGAGGCCTCAGCATTT
AA
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