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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR015880 | Zinc finger, C2H2-like | SMART | SM00355 | ZnF_C2H2 | coord: 374..396
e-value: 0.22
score: 20.6
coord: 231..253
e-value: 0.82
score: 18.7
coord: 289..311
e-value: 0.022
score: 23.9
coord: 317..339
e-value: 0.015
score: 24.5
coord: 345..368
e-value: 0.058
score: 22.5
coord: 402..425
e-value: 0.02
score: 24.1
coord: 257..282
e-value: 12.0
score: 12.5 |
| IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 393..421
e-value: 4.1E-13
score: 48.2
coord: 311..336
e-value: 9.3E-13
score: 47.1
coord: 337..365
e-value: 5.8E-8
score: 31.7 |
| IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 372..392
e-value: 2.4E-7
score: 30.0 |
| IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 287..310
e-value: 4.1E-8
score: 32.5 |
| IPR007087 | Zinc finger, C2H2 | PFAM | PF00096 | zf-C2H2 | coord: 264..282
e-value: 0.0076
score: 16.4 |
| IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 404..425 |
| IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 291..311 |
| IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 233..253 |
| IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 347..368 |
| IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 376..396 |
| IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 318..339 |
| IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 317..344
score: 13.713 |
| IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 402..430
score: 12.009 |
| IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 289..316
score: 13.858 |
| IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 257..287
score: 9.806 |
| IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 374..401
score: 14.233 |
| IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 345..373
score: 12.383 |
| None | No IPR available | PFAM | PF13465 | zf-H2C2_2 | coord: 333..355
e-value: 5.2E-6
score: 26.3
coord: 391..413
e-value: 1.5E-8
score: 34.3
coord: 304..327
e-value: 1.8E-5
score: 24.6 |
| None | No IPR available | PANTHER | PTHR11389 | ZINC FINGER PROTEIN | coord: 186..466 |
| None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 269..326 |
| None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 372..420 |
| None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 229..282 |
| None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 311..363 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000003344 ID=EMLSAP00000003344|Name=EMLSAP00000003344|organism=Lepeophtheirus salmonis|type=polypeptide|length=544bp
MINDILPQIEDYIRSYGDGSLVPILMKGVPYSLNVYSRHIDPFLLHFSAL
RLVLTPYQDGKFVIIKLLTRSLTLFKEPLSLSPESIKTSEEFHSLLDILL
SNKYMSCVGLAQRYGHEEVLVERWDKTLVYRSFNCSYVVKDTNLCSHCAQ
LKSSIKRNENSVESLDFCDRIITERDIDINIDAFNDSDGIDLDVAPPPIT
PSKKNNKNYINKRVLRKRKVTFVDKESSKAYNCPVCEHSFVEIKEYKAHC
MEHTDXLMCYEKETCTKKFKNKKSLEVHLRRHRDTKRPFVCTICSRKFNS
DEELQSHSFRHSGEKPFCCEICSKKFAKKSQVRIHMAVHTGEKAHLCPEC
GSSFGSMSTLIDHRKRLHLALRPNKCSTCFKCFYSKQELIIHIRVHTGER
PFPCKMCDKSFTRSHHLKRHSDNVHKKKDDFSSLAPVKYSDEEEEDDNVM
VIVGEDKSEKDETQIVLQTASYDTGPILVTKTNETPPILSSNVTSSLLDL
SQIVTENDVEQISENEFEETKYVIIESDDGSAKLIQYSESNNGK back to top
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