short stature homeobox, snap_masked-scaffold370_size193435-processed-gene-0.29 (gene) Tigriopus kingsejongensis

Overview


Name	short stature homeobox
Unique Name	snap_masked-scaffold370_size193435-processed-gene-0.29
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000003245 (supercontig:LSalAtl2s:LSalAtl2s178:264748:266715:1 gene:EMLSAG00000003245 transcript:EMLSAT00000003245 description:"maker-LSalAtl2s178-snap-gene-2.38")

HSP 1 Score: 148.288 bits (373), Expect = 5.350e-43
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 0

Query:   46 PRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV---TATPTPIG 120
            PRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRL LSEARVQVWFQNRRAKCRKHES HFK +   +A+ TPIG
Sbjct:   62 PRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLRLSEARVQVWFQNRRAKCRKHESHHFKGISSSSASITPIG 139

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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000005359 (supercontig:LSalAtl2s:LSalAtl2s289:230955:236378:-1 gene:EMLSAG00000005359 transcript:EMLSAT00000005359 description:"maker-LSalAtl2s289-augustus-gene-2.27")

HSP 1 Score: 93.5893 bits (231), Expect = 7.019e-22
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 0

Query:   47 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVTATPT-PIGNN 122
            RR RT FT EQL ELE  F ++HYPD + REEL+    L+EAR+QVWFQNRRAK RK E Q  K++ A+P+ P  NN
Sbjct:   88 RRHRTTFTQEQLQELETAFSKSHYPDIYCREELARSTKLNEARIQVWFQNRRAKXRKQEKQLQKALXASPSLPQCNN 164

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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000003502 (supercontig:LSalAtl2s:LSalAtl2s191:124333:132494:1 gene:EMLSAG00000003502 transcript:EMLSAT00000003502 description:"maker-LSalAtl2s191-augustus-gene-1.11")

HSP 1 Score: 90.8929 bits (224), Expect = 2.646e-21
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0

Query:   45 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 105
            K RRSRT FT  QL++LE  FD+T YPD + RE+L+ RL L+EARVQVWFQNRRAK RK E
Sbjct:   70 KIRRSRTTFTTSQLHQLELTFDKTQYPDVYTREDLAMRLELTEARVQVWFQNRRAKWRKRE 130

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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000005402 (supercontig:LSalAtl2s:LSalAtl2s290:359580:380960:-1 gene:EMLSAG00000005402 transcript:EMLSAT00000005402 description:"maker-LSalAtl2s290-snap-gene-3.19")

HSP 1 Score: 91.2781 bits (225), Expect = 3.191e-21
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 0

Query:   45 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 105
            K RR RT FT  QL ELER F ETHYPD + REE++ ++ L+EARVQVWFQNRRAK RK E
Sbjct:   58 KQRRIRTTFTSVQLKELERSFQETHYPDIYTREEIAMKIDLTEARVQVWFQNRRAKFRKSE 118

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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000004664 (supercontig:LSalAtl2s:LSalAtl2s242:897246:900136:1 gene:EMLSAG00000004664 transcript:EMLSAT00000004664 description:"maker-LSalAtl2s242-snap-gene-9.16")

HSP 1 Score: 89.7373 bits (221), Expect = 3.167e-20
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 0

Query:   45 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHES--------QHFKSVTA----TPTPIGNNPGCGAGQNLSSIGTPIS 139
            K RR+RT FT  QL+ELER F+++HYPD + REEL+ ++ L E RVQVWFQNRRAK R+ E         Q + +++     +P+ +G  P  G    L S   P S
Sbjct:  180 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKMEAARLGIQEYHALSGLNNTSPSQLGGRPHSGGLGGLPSALDPWS 286

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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000005639 (supercontig:LSalAtl2s:LSalAtl2s303:208734:276994:1 gene:EMLSAG00000005639 transcript:EMLSAT00000005639 description:"augustus_masked-LSalAtl2s303-processed-gene-2.0")

HSP 1 Score: 89.7373 bits (221), Expect = 6.509e-20
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 0

Query:   45 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHES 106
            K RRSRTNF+  QL ELER+F   HYPD FMRE L+ +L L E+R+ VWFQNRRAK RK E+
Sbjct:  241 KRRRSRTNFSQWQLEELERVFQSCHYPDVFMREALALKLDLKESRISVWFQNRRAKFRKKEN 302

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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000002762 (supercontig:LSalAtl2s:LSalAtl2s15:159436:165491:-1 gene:EMLSAG00000002762 transcript:EMLSAT00000002762 description:"maker-LSalAtl2s15-augustus-gene-2.14")

HSP 1 Score: 86.6557 bits (213), Expect = 8.399e-20
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 0

Query:   45 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQ 107
            K RR RT FT  QL+ LE LF +T YPD FMREE++ ++   E+RVQVWF+NRRAKCR+   Q
Sbjct:    5 KQRRERTTFTRAQLDILESLFAKTRYPDIFMREEVALKINXPESRVQVWFKNRRAKCRQQAKQ 67

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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000011960 (supercontig:LSalAtl2s:LSalAtl2s849:170721:174764:-1 gene:EMLSAG00000011960 transcript:EMLSAT00000011960 description:"maker-LSalAtl2s849-snap-gene-0.24")

HSP 1 Score: 85.1149 bits (209), Expect = 1.157e-19
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 0

Query:   47 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRK 103
            +R RT+F+  QL ELE  F+ THYPD + RE ++D+LGLSEARVQVWFQNRRAK R+
Sbjct:   88 KRHRTSFSHFQLCELEIAFESTHYPDVYFRELIADKLGLSEARVQVWFQNRRAKWRR 144

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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000008682 (supercontig:LSalAtl2s:LSalAtl2s538:211023:212397:-1 gene:EMLSAG00000008682 transcript:EMLSAT00000008682 description:"maker-LSalAtl2s538-augustus-gene-2.10")

HSP 1 Score: 86.2705 bits (212), Expect = 4.611e-19
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 0

Query:   40 SQNNNKP--RRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKH 104
            S ++ +P  RRSRT+F  +QL  LE+ F+++HYPD   REELSD   LSEAR+QVWF NRRAK R+H
Sbjct:  307 SSDDERPQFRRSRTSFNQDQLEYLEKQFEKSHYPDLKTREELSDHTNLSEARIQVWFSNRRAKWRRH 373

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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000006559 (supercontig:LSalAtl2s:LSalAtl2s35:172755:207694:-1 gene:EMLSAG00000006559 transcript:EMLSAT00000006559 description:"augustus_masked-LSalAtl2s35-processed-gene-2.1")

HSP 1 Score: 85.8853 bits (211), Expect = 4.930e-19
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0

Query:   43 NNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQN 96
            N K +R RT F+  QLNELER F +THYPD FMREEL+ R+GL+E+RVQVWFQN
Sbjct:  104 NGKQKRHRTRFSPSQLNELERSFSKTHYPDIFMREELAMRIGLTESRVQVWFQN 157

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BLAST of short stature homeobox vs. SwissProt
Match: gi|18202029|sp|O35750.2|SHOX2_RAT (RecName: Full=Short stature homeobox protein 2; AltName: Full=Paired family homeodomain protein Prx3)

HSP 1 Score: 134.035 bits (336), Expect = 3.553e-36
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 0

Query:   36 MDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 112
            M+   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K V
Sbjct:   36 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGV 112

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BLAST of short stature homeobox vs. SwissProt
Match: gi|6831676|sp|O15266.1|SHOX_HUMAN (RecName: Full=Short stature homeobox protein; AltName: Full=Pseudoautosomal homeobox-containing osteogenic protein; AltName: Full=Short stature homeobox-containing protein)

HSP 1 Score: 134.806 bits (338), Expect = 6.796e-36
Identity = 66/89 (74.16%), Postives = 67/89 (75.28%), Query Frame = 0

Query:   25 ENPGKTPGDSSMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVT 113
            E   K     S D   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K V 
Sbjct:   96 ECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVI 184

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BLAST of short stature homeobox vs. SwissProt
Match: gi|145559528|sp|O60902.4|SHOX2_HUMAN (RecName: Full=Short stature homeobox protein 2; AltName: Full=Homeobox protein Og12X; AltName: Full=Paired-related homeobox protein SHOT)

HSP 1 Score: 134.806 bits (338), Expect = 1.669e-35
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 0

Query:   36 MDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 112
            M+   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K V
Sbjct:  130 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGV 206

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BLAST of short stature homeobox vs. SwissProt
Match: gi|18202340|sp|P70390.1|SHOX2_MOUSE (RecName: Full=Short stature homeobox protein 2; AltName: Full=Homeobox protein Og12X; Short=OG-12; AltName: Full=Paired family homeodomain protein Prx3)

HSP 1 Score: 134.42 bits (337), Expect = 2.012e-35
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 0

Query:   36 MDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 112
            M+   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K V
Sbjct:  130 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGV 206

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BLAST of short stature homeobox vs. SwissProt
Match: gi|18203380|sp|Q9PVY0.1|RX1_CHICK (RecName: Full=Retinal homeobox protein Rx1; Short=cRax1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.140e-21
Identity = 72/221 (32.58%), Postives = 103/221 (46.61%), Query Frame = 0

Query:   23 ELENPGKTPGDS-SMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVTATPTPI--GNNPGCGAGQNLSSIGTPISAVPGSRLAGLLRSSNGPIPPMQSGMGGIK--KPPSPSSSPMNASGPHAMDLSRGTPLPKASFTDRLKEHALRSFDTHSRALISAQQYAAVAVAALKGSNNP 238
            EL  PG + G   +     Q   K RR+RT FT  QL+ELER F+++HYPD + REEL+ ++ L E RVQVWFQNRRAK R+ E     S+    TP+   N P   A     S   P+     S +     SS  P+  +   MG  +  +PP    S +N     A  +    P P    T  + ++ L   D  S ++ S +  A   +  +  +  P
Sbjct:   12 ELRKPGDSEGTPPAAAEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKMEASSMKLHDTPMLSFNRPPMTANVGPMSNSLPLDPWLTSPI-----SSATPVHSIPGFMGAPQALQPPYGGHSFLNTPPGMAQGMQPMAPAPYQCGTPFVDKYPLEDVDQRSSSIASLRMKAKEHIQTIDKTWQP 227

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BLAST of short stature homeobox vs. SwissProt
Match: gi|341941993|sp|O35602.2|RX_MOUSE (RecName: Full=Retinal homeobox protein Rx; AltName: Full=Retina and anterior neural fold homeobox protein)

HSP 1 Score: 96.2857 bits (238), Expect = 2.637e-21
Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 0

Query:   28 GKTPGDSSMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVTATPTPI 119
            G   GDS +        K RR+RT FT  QL+ELER F+++HYPD + REEL+ ++ L E RVQVWFQNRRAK R+ E     S+    +P+
Sbjct:  118 GPAAGDSKLSEEEPPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPL 209

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BLAST of short stature homeobox vs. SwissProt
Match: gi|18203379|sp|Q9PVX0.1|RX2_CHICK (RecName: Full=Retinal homeobox protein Rx2; Short=cRax2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.098e-21
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 0

Query:   25 ENPGKTPGDSSMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVTATPTPI 119
            E P    GD       Q   K RR+RT FT  QL+ELER F+++HYPD + REEL+ ++ L E RVQVWFQNRRAK R+ E     S+    +PI
Sbjct:  101 ELPAGDGGDGKPSDEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPI 195

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BLAST of short stature homeobox vs. SwissProt
Match: gi|6093753|sp|O35690.1|PHX2B_MOUSE (RecName: Full=Paired mesoderm homeobox protein 2B; AltName: Full=Neuroblastoma Phox; Short=NBPhox; AltName: Full=PHOX2B homeodomain protein; AltName: Full=Paired-like homeobox 2B >gi|116242712|sp|Q99453.2|PHX2B_HUMAN RecName: Full=Paired mesoderm homeobox protein 2B; AltName: Full=Neuroblastoma Phox; Short=NBPhox; AltName: Full=PHOX2B homeodomain protein; AltName: Full=Paired-like homeobox 2B)

HSP 1 Score: 95.1301 bits (235), Expect = 5.180e-21
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0

Query:   45 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 105
            K RR RT FT  QL ELER+F ETHYPD + REEL+ ++ L+EARVQVWFQNRRAK RK E
Sbjct:   97 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQE 157

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BLAST of short stature homeobox vs. SwissProt
Match: gi|296452886|sp|Q9Y2V3.2|RX_HUMAN (RecName: Full=Retinal homeobox protein Rx; AltName: Full=Retina and anterior neural fold homeobox protein)

HSP 1 Score: 95.5153 bits (236), Expect = 5.260e-21
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0

Query:   28 GKTPGDSSMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVTATPTPI 119
            G   G++ +    Q   K RR+RT FT  QL+ELER F+++HYPD + REEL+ ++ L E RVQVWFQNRRAK R+ E     S+    +P+
Sbjct:  118 GPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPL 209

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BLAST of short stature homeobox vs. SwissProt
Match: gi|81870610|sp|P97830.1|UNC4_RAT (RecName: Full=Homeobox protein unc-4 homolog; AltName: Full=Homeobox protein Uncx4.1; AltName: Full=Paired-type homeodomain transcription factor 1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.853e-21
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 0

Query:   45 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 105
            K RR+RTNFT  QL ELE+ F+E+HYPD FMRE L+ RL L E+RVQVWFQNRRAK RK E
Sbjct:  108 KRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALAVRLDLVESRVQVWFQNRRAKWRKKE 168

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BLAST of short stature homeobox vs. nr
Match: gi|1325264435|ref|XP_023335275.1| (homeobox protein orthopedia-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 146.362 bits (368), Expect = 1.147e-36
Identity = 121/305 (39.67%), Postives = 153/305 (50.16%), Query Frame = 0

Query:   47 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVTATPTPIGNNPGCGAGQNLSSIGTPISAVPGSRLAGLLRSSNGPIPPMQSGMGGIKKPPS---PSSSPMNASGPHAMDLSRGTPLPKASFTDRLKEHALRSFDTHSRALISAQQYAAVAVA-ALKGSNNPSPFLSGLSNSLLVSTLLQNSKLPHSTSSDTPIFPPFPSALFSNSHSSLAPLPFPSSMPTLRLGHRSGGGSNGLSHDLASMDPFKSKSSS-IADLRLKAKRHQEALGISE 346
            RRSRTNF+++QL+ELERLFDETHYPDAFMREELS+RLGLSEARVQVWFQNRRAKCRKHESQ  KS         ++PG G    LS+    + + PG  L  L  SS   +P     + G K P S   P    +N++     + S+          D   +  L+ F   S AL++A QYAAVA+A +L G                                   +FP    +L  +S  S +P P     P L L  R            +S      + SS IADLR KA++HQEALG+ E
Sbjct:  182 RRSRTNFSVDQLSELERLFDETHYPDAFMREELSERLGLSEARVQVWFQNRRAKCRKHESQMHKS---------SSPGPGV--QLSN----LHSTPGLTLRNLQNSSQS-LPGHTVNLSGSKLPYSNKLPEKQQLNSTQTFTENSSK---------PDVFADSVLKGFPPPS-ALLAAHQYAAVAMASSLTGH----------------------------------MFPSLSHSLLMSSLFSSSPHP----SPVLNLSSR-----------FSSFQELNVQKSSSIADLREKARKHQEALGLQE 411

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BLAST of short stature homeobox vs. nr
Match: gi|242013225|ref|XP_002427315.1| (Short stature homeobox protein, putative [Pediculus humanus corporis] >gi|212511656|gb|EEB14577.1| Short stature homeobox protein, putative [Pediculus humanus corporis])

HSP 1 Score: 139.428 bits (350), Expect = 5.494e-36
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 0

Query:   39 TSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKS-VTATPTP 118
            +S+  NK RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRKHESQ  K  + ++ TP
Sbjct:   24 SSKLQNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQMQKGMIVSSHTP 104

[Close]

BLAST of short stature homeobox vs. nr
Match: gi|1330878003|gb|PNF16407.1| (Short stature homeobox protein 2, partial [Cryptotermes secundus])

HSP 1 Score: 137.887 bits (346), Expect = 1.188e-35
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 0

Query:   42 NNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVTAT 115
              NK RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRKHESQ  K +  T
Sbjct:    5 KQNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQMQKGMMLT 78

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BLAST of short stature homeobox vs. nr
Match: gi|1059382290|ref|XP_017785965.1| (PREDICTED: short stature homeobox protein-like [Nicrophorus vespilloides])

HSP 1 Score: 143.665 bits (361), Expect = 1.303e-35
Identity = 70/106 (66.04%), Postives = 84/106 (79.25%), Query Frame = 0

Query:    3 SIGLSTEDDSPTSTLHQESNEL-ENPGKTPGDSSMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQ 107
            S  LS ++D     L++E +   E+     G S++++++++  K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRKHESQ
Sbjct:  170 SSSLSVDNDKKLFILNEEQDRTHEDTPLRHGPSAINISAKSATKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQ 275

[Close]

BLAST of short stature homeobox vs. nr
Match: gi|585722209|ref|XP_006903058.1| (PREDICTED: short stature homeobox protein-like [Elephantulus edwardii])

HSP 1 Score: 140.584 bits (353), Expect = 2.043e-35
Identity = 75/130 (57.69%), Postives = 85/130 (65.38%), Query Frame = 0

Query:   35 SMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVTATPTPIGNNPGCGAGQNLSSIGTPISAVPGSRLAGLLRSSNGPIPPMQSGM 164
            S D   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K      +P       G    L+++ T +    G+   G L S  GP P +Q+ +
Sbjct:  111 SEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHK---GGRSPWLRGGEAGEATRLAAMRTGVRLALGAGELGTLPSPRGPRPAVQAQL 237

[Close]

BLAST of short stature homeobox vs. nr
Match: gi|1083279346|ref|XP_018588008.1| (PREDICTED: short stature homeobox protein 2 [Scleropages formosus])

HSP 1 Score: 136.732 bits (343), Expect = 2.195e-35
Identity = 64/77 (83.12%), Postives = 66/77 (85.71%), Query Frame = 0

Query:   36 MDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 112
            M+  SQ   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K V
Sbjct:   49 MEDESQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGV 125

[Close]

BLAST of short stature homeobox vs. nr
Match: gi|706124194|ref|XP_010197417.1| (PREDICTED: short stature homeobox protein, partial [Colius striatus])

HSP 1 Score: 133.265 bits (334), Expect = 2.470e-35
Identity = 63/76 (82.89%), Postives = 64/76 (84.21%), Query Frame = 0

Query:   35 SMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFK 110
            S D   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K
Sbjct:   13 SEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHK 88

[Close]

BLAST of short stature homeobox vs. nr
Match: gi|701330596|ref|XP_009977752.1| (PREDICTED: short stature homeobox protein, partial [Tauraco erythrolophus] >gi|704459185|ref|XP_010078737.1| PREDICTED: short stature homeobox protein, partial [Pterocles gutturalis])

HSP 1 Score: 133.265 bits (334), Expect = 2.523e-35
Identity = 63/76 (82.89%), Postives = 64/76 (84.21%), Query Frame = 0

Query:   35 SMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFK 110
            S D   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K
Sbjct:   13 SEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHK 88

[Close]

BLAST of short stature homeobox vs. nr
Match: gi|1121127198|ref|XP_019551508.1| (PREDICTED: short stature homeobox protein 2-like [Aedes albopictus])

HSP 1 Score: 140.198 bits (352), Expect = 2.524e-35
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 0

Query:   32 GDSSMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 112
            G  +  L S  NNK RRSRTNFTLEQLNELERLF+ETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRKHE+Q  K +
Sbjct:   51 GVGATGLGSLANNKQRRSRTNFTLEQLNELERLFEETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHENQLHKGI 131

[Close]

BLAST of short stature homeobox vs. nr
Match: gi|678111637|gb|KFU88180.1| (Short stature homeobox protein 2, partial [Chaetura pelagica])

HSP 1 Score: 134.42 bits (337), Expect = 2.903e-35
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0

Query:   34 SSMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 112
             +M+   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K V
Sbjct:   13 KAMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGV 91

The following BLAST results are available for this feature:

BLAST of short stature homeobox vs. L. salmonis genes
BLAST of short stature homeobox vs. SwissProt
BLAST of short stature homeobox vs. nr

BLAST of short stature homeobox vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000003245	5.350e-43	87.18	supercontig:LSalAtl2s:LSalAtl2s178:264748:266715:1...	[more]
EMLSAG00000005359	7.019e-22	58.44	supercontig:LSalAtl2s:LSalAtl2s289:230955:236378:-...	[more]
EMLSAG00000003502	2.646e-21	67.21	supercontig:LSalAtl2s:LSalAtl2s191:124333:132494:1...	[more]
EMLSAG00000005402	3.191e-21	67.21	supercontig:LSalAtl2s:LSalAtl2s290:359580:380960:-...	[more]
EMLSAG00000004664	3.167e-20	43.93	supercontig:LSalAtl2s:LSalAtl2s242:897246:900136:1...	[more]
EMLSAG00000005639	6.509e-20	64.52	supercontig:LSalAtl2s:LSalAtl2s303:208734:276994:1...	[more]
EMLSAG00000002762	8.399e-20	58.73	supercontig:LSalAtl2s:LSalAtl2s15:159436:165491:-1...	[more]
EMLSAG00000011960	1.157e-19	64.91	supercontig:LSalAtl2s:LSalAtl2s849:170721:174764:-...	[more]
EMLSAG00000008682	4.611e-19	58.21	supercontig:LSalAtl2s:LSalAtl2s538:211023:212397:-...	[more]
EMLSAG00000006559	4.930e-19	68.52	supercontig:LSalAtl2s:LSalAtl2s35:172755:207694:-1...	[more]

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BLAST of short stature homeobox vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|18202029\|sp\|O35750.2\|SHOX2_RAT	3.553e-36	81.82	RecName: Full=Short stature homeobox protein 2; Al...	[more]
gi\|6831676\|sp\|O15266.1\|SHOX_HUMAN	6.796e-36	74.16	RecName: Full=Short stature homeobox protein; AltN...	[more]
gi\|145559528\|sp\|O60902.4\|SHOX2_HUMAN	1.669e-35	81.82	RecName: Full=Short stature homeobox protein 2; Al...	[more]
gi\|18202340\|sp\|P70390.1\|SHOX2_MOUSE	2.012e-35	81.82	RecName: Full=Short stature homeobox protein 2; Al...	[more]
gi\|18203380\|sp\|Q9PVY0.1\|RX1_CHICK	2.140e-21	32.58	RecName: Full=Retinal homeobox protein Rx1; Short=...	[more]
gi\|341941993\|sp\|O35602.2\|RX_MOUSE	2.637e-21	47.83	RecName: Full=Retinal homeobox protein Rx; AltName...	[more]
gi\|18203379\|sp\|Q9PVX0.1\|RX2_CHICK	4.098e-21	48.42	RecName: Full=Retinal homeobox protein Rx2; Short=...	[more]
gi\|6093753\|sp\|O35690.1\|PHX2B_MOUSE	5.180e-21	68.85	RecName: Full=Paired mesoderm homeobox protein 2B;...	[more]
gi\|296452886\|sp\|Q9Y2V3.2\|RX_HUMAN	5.260e-21	46.74	RecName: Full=Retinal homeobox protein Rx; AltName...	[more]
gi\|81870610\|sp\|P97830.1\|UNC4_RAT	5.853e-21	70.49	RecName: Full=Homeobox protein unc-4 homolog; AltN...	[more]

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BLAST of short stature homeobox vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1325264435\|ref\|XP_023335275.1\|	1.147e-36	39.67	homeobox protein orthopedia-like isoform X2 [Euryt...	[more]
gi\|242013225\|ref\|XP_002427315.1\|	5.494e-36	81.48	Short stature homeobox protein, putative [Pediculu...	[more]
gi\|1330878003\|gb\|PNF16407.1\|	1.188e-35	86.49	Short stature homeobox protein 2, partial [Cryptot...	[more]
gi\|1059382290\|ref\|XP_017785965.1\|	1.303e-35	66.04	PREDICTED: short stature homeobox protein-like [Ni...	[more]
gi\|585722209\|ref\|XP_006903058.1\|	2.043e-35	57.69	PREDICTED: short stature homeobox protein-like [El...	[more]
gi\|1083279346\|ref\|XP_018588008.1\|	2.195e-35	83.12	PREDICTED: short stature homeobox protein 2 [Scler...	[more]
gi\|706124194\|ref\|XP_010197417.1\|	2.470e-35	82.89	PREDICTED: short stature homeobox protein, partial...	[more]
gi\|701330596\|ref\|XP_009977752.1\|	2.523e-35	82.89	PREDICTED: short stature homeobox protein, partial...	[more]
gi\|1121127198\|ref\|XP_019551508.1\|	2.524e-35	80.25	PREDICTED: short stature homeobox protein 2-like [...	[more]
gi\|678111637\|gb\|KFU88180.1\|	2.903e-35	79.75	Short stature homeobox protein 2, partial [Chaetur...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold370_size193435	supercontig	scaffold370_size193435:186852..189766 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	P:regulation of transcription
Note	DNA-dependent

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold370_size193435-processed-gene-0.29-mRNA-1	snap_masked-scaffold370_size193435-processed-gene-0.29-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold370_size193435:186852..189766-

gene from alignment at scaffold370_size193435:186852..189766-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold370_size193435-processed-gene-0.29 ID=snap_masked-scaffold370_size193435-processed-gene-0.29|Name=short stature homeobox|organism=Tigriopus kingsejongensis|type=gene|length=2915bp|location=Sequence derived from alignment at scaffold370_size193435:186852..189766- (Tigriopus kingsejongensis)
ATGATCTCCATAGGTGTTGGTTTTGCACTCATGAATGAGTGCCAAAGCAG
TCATGCGTGAGGACCAACTATCTGCCTCCTGTGAATGAGCCCATGACCAG
ACCGTGAACTGGTGATAATATCACTCGTGTGTGTGAGGGGGAGTTTGAAA
TCATTTACCGTCAGACTTGCATCTCTTCATTTCTCAATTCTAGGTCTTTC
AACTGAGGACGATTCACCCACCAGCACTTTGCATCAGGAGAGCAATGAGC
TGGAGAACCCAGGCAAAACTCCAGGGGACTCTTCGATGGACTTGACCTCT
CAGAACAACAATAAACCCAGACGGAGCAGAACCAATTTCACTCTAGAGCA
ATTGAACGAATTGGAGAGACTCTTTGACGAGACCCATTACCCTGATGCAT
TCATGAGAGAGGAGCTAAGCGACAGATTGGGTCTGAGTGAAGCGAGAGTA
CAGGTAAAGTAATGACAATAGTCCCGTAATTAATTTCATAGCAAAGTCGC
AGTGATCATTGGTACACTGGTCGCACTGTCGAGGACGAAACAGACACAAC
TCCAAAGTGTCAATCATTGACCAAACCAATCAGTTATGAGCCATTAAAGT
CGATTATTTCACTGATTTATGGATGGAAAAACGATTATTTATCTCTTACA
TCGATTTGTCGAAAAACAAAAAAGAATTATTGTTTTTTTCTGAAATTAAA
TCGATTATCTCGTACATAGCGAAGCGACCTGCGAGGGACCAATCAGAGTA
ATCAGTTCGCAGGCCACTACGAGTAGAGGCTTGATGTGTGTACATTCTGT
CTTTTGCAGCGATCAGTACCAGCAGTCTCACATTGCATACTTCCGACGAT
CTAGTGTGCTTTTGGATTGTTGGATGGATATAAGGATAGCCTATTGTAAC
CTATATAGTATATATATAAGCCAACTAGCGTGTGAATACAGAAAAGTGAA
ATTCCAGGTTCCTTTATTTCACCGTATCAGGTCCCTTTCAGAGTGCACAA
AGGCTAATATTAGGCATGGGTAAACGAGTTAGTGATAGATTTGACACGCA
AACATGTTTTAGTGGTGGTGGAGTTGATCGCTCATCAGTTTCAATTACAA
GTTTGGATACACAACATTAGACCATCAGGGCACGCCCCGAGGGATGACCA
TTACTGGCAATCAATCAGTAGGGATGATCCTCTCTCATCAGATTCCCATT
TTCTCAATCATCATCATTGGCGATGGATTCGTAACAGCGCCTCTCAATCC
ACTGAAAACAATCCTTTTCGCGCACCAAGGTCCCCTTCAAGTGATCCACT
GAAGAAAATATCCTCTCCAGTAATTGCTGGGAGTTTGAATGGAACACCTT
GTAATACTGTATATTCGATGCAATTTGAATAGCAAGTTTCCACCCTGCAG
GTGGGGGAGAAAATCCTTGTGTGATACAATCAAAAGTTGCCTAGGGGACC
ATTTTAAGCAGTGGTGAACAATTCTGGCACTCAAACTTGGACGATGCTGT
TCCCTCTTCGCTTTAAGAGCATCATCCATTTTCGTTTGGTGGGATCGATG
TCCTGGATGGCAGATGCCCAAGCATCTCCGATTGTCGCCAATGGTTCCTC
CCAGGGAGTCCGAGCTGGTAGGCTGGCAGTATCCACCACAAAATGGCATC
ATCATTATCGCTGACTCGTGTCATTTGGTGGCCCAATCATCGCTCATCAG
AAAATGAGGACAGATTTTGGGTCCATATCTTGGGGCAGGGGGTCACGGAA
GCTGAGCTCAAGCGTAAACACGGCGATCCGATCTTCTAGGTTTGGTTCCA
AAACCGGCGAGCCAAGTGTCGGAAGCACGAGAGCCAGCATTTCAAGTCGG
TGACAGCCACGCCCACTCCGATTGGGAACAATCCGGGGTGTGGGGCGGGG
CAGAATCTGTCCAGCATTGGAACACCCATCTCGGCCGTGCCTGGGAGTCG
GCTGGCTGGGCTTTTGCGATCGTCCAACGGCCCTATTCCACCCATGCAGT
CCGGGATGGGCGGGATCAAGAAGCCACCGTCGCCCTCGTCATCCCCAATG
AACGCCAGCGGGCCCCATGCCATGGACTTGTCTAGAGGAACGCCCCTTCC
CAAAGCCTCATTCACCGACCGACTCAAAGAGCACGCACTCAGAAGCTTTG
ATACCCACTCGAGGGCCCTCATTAGTGCTCAGCAGGTAACCATACCGACT
TTAATTTAATTTACTATGCAAGCAATCTAACCCAGACTTTATATGTACAT
TGAATCCAATTCGTATCTCGGTCTAAGTACTTAGTACTTCAAGTACTTCG
TGTACGAAGTAGTTCATGTTAACACCGAATAAGTTTGATGCTGTCAGCTG
TTGCAATTTGTTAGGAGTCAAGGAAGGCGCCAATTTTAAAATACAGTGGT
ACAAATTAAACCTTGCAACTTAGTTTAATAGAGGGTTGCAATGGAGTTAA
AACTTTGTTAAGCAATAGACAAGCTGTACAGGTATGACATATTGCAGAGA
TACCTGATAATTTGTAATGCCTATTCTCTAATTTCAGTACGCGGCAGTAG
CTGTGGCGGCTCTCAAAGGGTCAAATAATCCCTCTCCTTTCTTATCAGGG
CTGAGCAATTCTCTCCTTGTCAGTACTTTACTTCAAAATTCCAAGTTACC
CCATTCCACCAGCTCAGACACGCCCATTTTCCCACCATTTCCCTCGGCTC
TGTTCTCCAACTCCCACTCAAGTCTCGCCCCTCTGCCATTCCCATCCTCC
ATGCCAACCTTGAGGTTGGGACACCGAAGTGGGGGTGGTTCCAACGGGTT
GTCCCACGATCTGGCCTCCATGGACCCGTTCAAGTCGAAATCTTCAAGCA
TTGCAGACCTGCGGCTGAAAGCCAAACGCCACCAAGAAGCCTTGGGCATC
AGTGAGAGTGATTGA

Synonyms

The feature 'short stature homeobox' has the following synonyms


Synonym
Tk07800

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