methyl- binding transcription, maker-scaffold17_size721972-snap-gene-2.9 (gene) Tigriopus kingsejongensis

Overview
Namemethyl- binding transcription
Unique Namemaker-scaffold17_size721972-snap-gene-2.9
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of methyl- binding transcription vs. L. salmonis genes
Match: EMLSAG00000002677 (supercontig:LSalAtl2s:LSalAtl2s154:562822:564714:-1 gene:EMLSAG00000002677 transcript:EMLSAT00000002677 description:"maker-LSalAtl2s154-augustus-gene-5.11")

HSP 1 Score: 221.861 bits (564), Expect = 9.182e-71
Identity = 127/299 (42.47%), Postives = 164/299 (54.85%), Query Frame = 0
Query:   59 GYRRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPDEEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSK-HMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAALT 356
            G RR EV+ LP+GW REE  R                   DV Y SP G  ++++ EL K LGEHYD+TAFD+ SGKI   L  ++     S + +    +      S         A   +    L  DA+LVPPIRQTASIFKQPVT                                 KPRQLFWEKRLSG+ ASYPDE++EPF LP N   VGPGV +DIVLASI+T LHMG G+ NGQ ++K +  E +P  + +P+QPLIG   ++  D+EKQE++V+  R+ L EA+ +LT
Sbjct:   19 GVRRVEVSTLPRGWCREEISR---------------GNRTDVHYISPLGVRVRNRNELGKVLGEHYDLTAFDYSSGKI---LSSSNNISSSSSNNNNANTNHTHSQHSISARNPQKRAKTYDFTKTLKNDASLVPPIRQTASIFKQPVTXXXXXXXX---------XXXXXXXXXXXXXXXXKPRQLFWEKRLSGLRASYPDEDYEPFSLPSNITAVGPGVNNDIVLASIATVLHMGNGSXNGQSNNKVNNFEKNPGVYVDPDQPLIGGXSVTXADVEKQEERVDAARKALEEALESLT 290          
BLAST of methyl- binding transcription vs. L. salmonis genes
Match: EMLSAG00000001097 (supercontig:LSalAtl2s:LSalAtl2s117:967131:967352:-1 gene:EMLSAG00000001097 transcript:EMLSAT00000001097 description:"augustus-LSalAtl2s117-processed-gene-9.3")

HSP 1 Score: 53.9138 bits (128), Expect = 6.334e-10
Identity = 32/79 (40.51%), Postives = 42/79 (53.16%), Query Frame = 0
Query:   59 GYRRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKIN 137
            G RR EV+ LP+ W REE  R        G + G       V Y +P G  ++++ EL K L EHYD+TA D  S KI+
Sbjct:    6 GVRRDEVSNLPRRWCREEISR--------GNRTG-------VYYIAPTGVRVRNRNELGKVLAEHYDLTASDHFSEKIH 69          
BLAST of methyl- binding transcription vs. SwissProt
Match: gi|50400820|sp|O95983.1|MBD3_HUMAN (RecName: Full=Methyl-CpG-binding domain protein 3; AltName: Full=Methyl-CpG-binding protein MBD3)

HSP 1 Score: 149.828 bits (377), Expect = 1.735e-41
Identity = 102/295 (34.58%), Postives = 148/295 (50.17%), Query Frame = 0
Query:   61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAA-SYPDEEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAA 354
            +R E   LP+GW REE PR          ++G S    DV YYSP G+  +SKP+LA+ LG   D++ FDF++GK+  L+ + +         S+ +   KP                 +  TAL        P+RQTASIFKQPVT         K+  +   K  S          V++PRQLFWEK+LSG+ A    +E  +   LP     VGPG TD+ +L++I+++LH     I GQ  +    E +P  + N  QPL     ++ +DI KQE+ V + R++L EA+ A
Sbjct:    4 KRWECPALPQGWEREEVPR----------RSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGKM--LMSKMNKSRQRVRYDSSNQVKGKP-----------------DLNTAL--------PVRQTASIFKQPVT---------KITNHPSNKVKS-----DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASALHTSTMPITGQLSAA--VEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALMA 245          
BLAST of methyl- binding transcription vs. SwissProt
Match: gi|50401209|sp|Q9Z2D8.1|MBD3_MOUSE (RecName: Full=Methyl-CpG-binding domain protein 3; AltName: Full=Methyl-CpG-binding protein MBD3)

HSP 1 Score: 148.673 bits (374), Expect = 3.470e-41
Identity = 104/296 (35.14%), Postives = 147/296 (49.66%), Query Frame = 0
Query:   61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVS-GSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAA-SYPDEEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAA 354
            +R E   LP+GW REE PR          ++G S    DV YYSP G+  +SKP+LA+ LG   D++ FDF++GK   +L+    K    V   S+ +   KP                 +  TAL        P+RQTASIFKQPVT         K+  +   K  S          V++PRQLFWEK+LSG++A    +E      LP     VGPG TD+ +L++I+++LH     I GQ  +    E +P  + N  QPL     ++  DI KQE+ V + R++L EA+ A
Sbjct:    4 KRWECPALPQGWEREEVPR----------RSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGK---MLMNKMNKSRQRVRYDSSNQVKGKP-----------------DLNTAL--------PVRQTASIFKQPVT---------KITNHPSNKVKS-----DPQKAVDQPRQLFWEKKLSGLSAFDIAEELVRTMDLPKGLQGVGPGCTDETLLSAIASALHTSTLPITGQLSAA--VEKNPGVWLNTAQPLCKAFMVTDDDIRKQEELVQQVRKRLEEALMA 245          
BLAST of methyl- binding transcription vs. SwissProt
Match: gi|341940941|sp|Q9Z2E1.2|MBD2_MOUSE (RecName: Full=Methyl-CpG-binding domain protein 2; AltName: Full=Methyl-CpG-binding protein MBD2)

HSP 1 Score: 149.828 bits (377), Expect = 2.801e-40
Identity = 98/295 (33.22%), Postives = 152/295 (51.53%), Query Frame = 0
Query:   61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPDEE-FEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAA 354
            +R +   LP GW +EE       +   G   G S    DV Y+SP G+  +SKP+LA+ LG   D+++FDF++GK+ P  L+ + +          R  + P++ + G                   D     PIRQTASIFKQPVT F                 ++K +++ +  N E+PRQLFWEKRL G++AS   E+  +  +LP     VGPG  D+ +L++++++LH     I GQ  +    E +P+ + N  QPL     ++ +DI KQE++V + R+KL EA+ A
Sbjct:  151 KRMDCPALPPGWKKEEV------IRKSGLSAGKS----DVYYFSPSGKKFRSKPQLARYLGNAVDLSSFDFRTGKMMPSKLQKNKQ----------RLRNDPLNQNKGKP-----------------DLNTTLPIRQTASIFKQPVTKFT-------------NHPSNKVKSDPQRMN-EQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHTSSAPITGQVSA--AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEALMA 392          
BLAST of methyl- binding transcription vs. SwissProt
Match: gi|50401198|sp|Q9UBB5.1|MBD2_HUMAN (RecName: Full=Methyl-CpG-binding domain protein 2; AltName: Full=Demethylase; Short=DMTase; AltName: Full=Methyl-CpG-binding protein MBD2)

HSP 1 Score: 148.673 bits (374), Expect = 6.255e-40
Identity = 101/296 (34.12%), Postives = 150/296 (50.68%), Query Frame = 0
Query:   61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASK-QRTESKSSNVEKPRQLFWEKRLSGMAASYPDEE-FEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAA 354
            +R +   LP GW +EE       +   G   G S    DV Y+SP G+  +SKP+LA+ LG   D+++FDF++GK+ P  L+ + +          R  + P++ + G                   D     PIRQTASIFKQPVT         KV  +   K  S  QR        E+PRQLFWEKRL G++AS   E+  +  +LP     VGPG  D+ +L++++++LH     I GQ  +    E +P+ + N  QPL     ++ +DI KQE++V + R+KL EA+ A
Sbjct:  148 KRMDCPALPPGWKKEEV------IRKSGLSAGKS----DVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQKNKQ----------RLRNDPLNQNKGKP-----------------DLNTTLPIRQTASIFKQPVT---------KVTNHPSNKVKSDPQRMN------EQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHTSSAPITGQVSA--AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEALMA 389          
BLAST of methyl- binding transcription vs. nr
Match: gi|939278493|ref|XP_014259790.1| (methyl-CpG-binding domain protein 2 isoform X2 [Cimex lectularius])

HSP 1 Score: 208.764 bits (530), Expect = 3.550e-62
Identity = 122/305 (40.00%), Postives = 171/305 (56.07%), Query Frame = 0
Query:   55 VAAAGYRRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKIN-PLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPD-EEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAALTG 357
            ++A   +R +   LPKGW REE  R          ++G S   VDV YYSP GQ  +SKP+L +A+ +  D+TAFDF +GK N  LL+R   KP                            AN  + +  +  DA+LVPPIRQTASIFKQPVT+++           ++GKT S+     K  N EKP+QLFWEKRL G+ AS  D  E +  +LP N   VGP V D+ +L S++T+LH+ G  I GQ  +K   E +P  + NPEQPL+    I+++DI++QE++VN  R++L +A+  L G
Sbjct:    1 MSALEKKRYDCTALPKGWQREEITR----------KSGLSAGKVDVCYYSPEGQKFESKPQLVRAISDTVDLTAFDFSTGKCNNSLLVRRHKKP---------------------------RANQFDYSRGMRNDASLVPPIRQTASIFKQPVTLYR----------TQEGKTKSEF---GKHGNQEKPKQLFWEKRLEGLRASDIDGSELKGMELPRNLKSVGPNVNDETLLQSMATALHVLGQPITGQLGAKASLEKNPGVYLNPEQPLVQAVSITEEDIKRQEERVNLARKRLEDAMKELEG 255          
BLAST of methyl- binding transcription vs. nr
Match: gi|675381355|gb|KFM74257.1| (Methyl-CpG-binding domain protein 2, partial [Stegodyphus mimosarum])

HSP 1 Score: 208.379 bits (529), Expect = 3.994e-62
Identity = 121/296 (40.88%), Postives = 169/296 (57.09%), Query Frame = 0
Query:   63 SEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGT--NAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPDEE-FEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAAL 355
            ++   LPKGW REE  R          +NG S   +DV YYSP G+  +SKP+LA+ LG+  D++ FD+++GKIN LLLR S +                               GT  +    +  DA+LVPPIRQTASIFKQPVTV +          + DGK     RT+ K    +KP+QLFWEKRL G+ AS  DEE F  F+LP N   VGP +T++ +L SI+T+LH+ G  I GQ +S+ + + +PS + NPEQPL+    ++++DI+KQE++V   R+KL E +  L
Sbjct:    4 TDCPALPKGWKREEIIR----------KNGLSSGKIDVFYYSPSGKRFRSKPQLARFLGDAVDLSTFDYRTGKINSLLLRKSKR-----------------------------QRGTQFDYNRGIRNDASLVPPIRQTASIFKQPVTVIR----------STDGKV----RTDFKHGPQDKPKQLFWEKRLQGLKASDMDEEAFNNFELPRNMKGVGPDLTEETLLRSIATALHVSGQPIVGQTNSRVVLDKNPSVYINPEQPLVQALVVTEEDIKKQEEKVQLARKKLQECLKEL 246          
BLAST of methyl- binding transcription vs. nr
Match: gi|1009565899|ref|XP_015915414.1| (methyl-CpG-binding domain protein 2-like [Parasteatoda tepidariorum] >gi|1009565902|ref|XP_015915415.1| methyl-CpG-binding domain protein 2-like [Parasteatoda tepidariorum])

HSP 1 Score: 207.994 bits (528), Expect = 5.119e-62
Identity = 122/295 (41.36%), Postives = 168/295 (56.95%), Query Frame = 0
Query:   64 EVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGT--NAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPDEE-FEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAAL 355
            E   LPKGW REE  R          +NG S   +DV YYSP G+  +SKP+LA+ LG+  D++ FD+++GKIN LLLR S +                               GT  +    +  DA+LVPPIRQTASIFKQPVTV K          + DGK     R++ K    +KP+QLFWEKRL G+ AS  DEE F  F+LP N   VGP +T++ +L SI+T+LH+ G  I GQ +S+ + + +PS + NPEQPL+    ++++DI+KQE++V   R+KL E +  L
Sbjct:    5 ECPALPKGWKREEIIR----------KNGLSSGKIDVYYYSPSGKRFRSKPQLARYLGDAVDLSTFDYRTGKINSLLLRKSKR-----------------------------QRGTQFDYNRGIRNDASLVPPIRQTASIFKQPVTVVK----------STDGKV----RSDFKHGPQDKPKQLFWEKRLQGLKASDMDEEAFNNFELPKNMKGVGPDLTEETLLRSIATALHVSGQPIVGQTNSRVVLDKNPSVYINPEQPLVQAIVVTEEDIKKQEEKVLLARKKLQECLKEL 246          
BLAST of methyl- binding transcription vs. nr
Match: gi|939278491|ref|XP_014259789.1| (methyl-CpG-binding domain protein 2 isoform X1 [Cimex lectularius])

HSP 1 Score: 205.682 bits (522), Expect = 4.771e-61
Identity = 121/305 (39.67%), Postives = 170/305 (55.74%), Query Frame = 0
Query:   55 VAAAGYRRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKIN-PLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPD-EEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAALTG 357
            ++A   +R +   LPKGW REE  R          ++G S   VDV YYSP GQ  +SKP+L +A+ +  D+TAFDF +GK N  LL+R   KP                           A     ++  +  DA+LVPPIRQTASIFKQPVT+++           ++GKT S+     K  N EKP+QLFWEKRL G+ AS  D  E +  +LP N   VGP V D+ +L S++T+LH+ G  I GQ  +K   E +P  + NPEQPL+    I+++DI++QE++VN  R++L +A+  L G
Sbjct:    1 MSALEKKRYDCTALPKGWQREEITR----------KSGLSAGKVDVCYYSPEGQKFESKPQLVRAISDTVDLTAFDFSTGKCNNSLLVRRHKKP--------------------------RANQFDYSSRGMRNDASLVPPIRQTASIFKQPVTLYR----------TQEGKTKSEF---GKHGNQEKPKQLFWEKRLEGLRASDIDGSELKGMELPRNLKSVGPNVNDETLLQSMATALHVLGQPITGQLGAKASLEKNPGVYLNPEQPLVQAVSITEEDIKRQEERVNLARKRLEDAMKELEG 256          
BLAST of methyl- binding transcription vs. nr
Match: gi|939636846|ref|XP_014294369.1| (PREDICTED: methyl-CpG-binding domain protein 3 isoform X2 [Halyomorpha halys])

HSP 1 Score: 201.06 bits (510), Expect = 2.767e-59
Identity = 119/293 (40.61%), Postives = 160/293 (54.61%), Query Frame = 0
Query:   61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPD-EEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAI 352
            +R E + LPKGW REE  R          + G S   VDV YYSP GQ   SKP+L +A+ +  D+T FDF +GK N LL R   KP  S                             + +  +  DA+LVPPIRQTASIFKQPVTV++           ++GK     + + K    EKP+QLFWEKRL G+ AS       EP +LP +  P GPGVTD+ +L S++T+LH+ G  I GQ + K   + +P+ F NP+QPLI    IS  DI++QE++VN  R++L EA+
Sbjct:    6 KRFECSALPKGWQREEVIR----------KTGLSAGKVDVCYYSPDGQKYDSKPQLVRAISDSIDLTTFDFSTGKCNTLLARRHKKPRTS---------------------------QFDYSRGVRNDASLVPPIRQTASIFKQPVTVYR----------TQEGKV----KADFKHGPQEKPKQLFWEKRLEGLRASDAHGNPLEPMELPRSLRPAGPGVTDETLLQSVATALHVLGQPITGQTNMKPGSDKNPAVFINPDQPLIQAVSISDDDIKRQEERVNLARKRLQEAM 247          
BLAST of methyl- binding transcription vs. nr
Match: gi|1228362560|ref|XP_021967669.1| (methyl-CpG-binding domain protein 2-like [Folsomia candida] >gi|1215278390|gb|OXA64699.1| Methyl-CpG-binding domain protein 2 [Folsomia candida])

HSP 1 Score: 201.445 bits (511), Expect = 2.777e-59
Identity = 115/290 (39.66%), Postives = 160/290 (55.17%), Query Frame = 0
Query:   67 GLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPD-EEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAAL 355
             LPKGWIREE  R          + G S   VDVVYYSP  +  KSKP+L++ LG+ +D+  FDFQ+GK+N LL++           +  RK   P+  + G+ +                D+ L+PPIRQTASIFKQPVT+ K    + K D               K  + +KP+Q+FWEKRL G+ A   D EE E   LP    P+GP VT D VL S++T+LH+ G  I GQ  ++   +N+P  + NPEQPLI    ++++DI  QE++V   R++L EAI +L
Sbjct:   17 ALPKGWIREEIIR----------KTGLSAGKVDVVYYSPNQKKFKSKPQLSRYLGDSFDLAGFDFQTGKVNSLLIK-----------NRNRKPKVPIDYNRGVRS----------------DSTLLPPIRQTASIFKQPVTIIKTQKSMVKQD--------------FKHGHQDKPKQVFWEKRLEGLKACDADGEELESLTLPKGVEPMGPHVTADTVLQSVATALHVNGQPITGQTSNRTNLDNNPGVYINPEQPLIQAIVVAEEDIRSQEERVLVARKRLEEAIRSL 255          
BLAST of methyl- binding transcription vs. nr
Match: gi|1316203510|ref|XP_023212088.1| (methyl-CpG-binding domain protein 2-like isoform X2 [Centruroides sculpturatus])

HSP 1 Score: 199.519 bits (506), Expect = 9.163e-59
Identity = 121/295 (41.02%), Postives = 161/295 (54.58%), Query Frame = 0
Query:   64 EVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKP-GPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPDEE-FEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAALT 356
            E   LPKGW REE  R          + G S   +DV YYSP G+  +SKP+LA+ LG+  D++ FDF++GKIN +LLR S +  G     S G                            +  D +LVPPIRQTASIFKQPVTV K S E             SK RT+ K    EKP+QLFWEKRL G+ A   +EE F+ F LP N   VGP +T++ +L SI+T+LH+    I GQ  SK   E +P    NP+QPL+    ++  DI KQE++V++ R+KL EA+  ++
Sbjct:    2 ECPALPKGWKREEVIR----------RTGLSAGKIDVYYYSPTGKKFRSKPQLARYLGDTVDLSTFDFRTGKINSMLLRKSKRQRGAQFDYSRG----------------------------IRNDTSLVPPIRQTASIFKQPVTVVK-SQE-------------SKVRTDFKHGPQEKPKQLFWEKRLQGLKACDVNEEAFQSFDLPKNMRGVGPDLTEETLLRSIATALHVSAQPITGQTGSKSGLEKNPGVHINPDQPLVQALVVTDDDIRKQEEKVHQARKKLEEALIEIS 244          
BLAST of methyl- binding transcription vs. nr
Match: gi|241616494|ref|XP_002407962.1| (methyl-CpG binding transcription regulator, putative [Ixodes scapularis] >gi|215502882|gb|EEC12376.1| methyl-CpG binding transcription regulator, putative [Ixodes scapularis])

HSP 1 Score: 199.904 bits (507), Expect = 1.075e-58
Identity = 118/296 (39.86%), Postives = 166/296 (56.08%), Query Frame = 0
Query:   63 SEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGT--NAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPDEE-FEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAAL 355
            ++   LPKGW REE  R          + G S   VDV YYSP G+  +SKP+LA+ LG+  D++ FDF++GKIN LLLR S +                               GT  + +  +  DA+LVPPIRQTASIFKQPVTV +          +++GK     R++ K    +KP+QLFWEKRL G+ A   DEE  + F+LP +   VGP V+ + +L SI+T+LHM    I GQ  S+ + E  P  + NP+QPL+    ++ +DI KQE+QV++ R+KL +A+A L
Sbjct:   14 TDCPALPKGWKREEVIR----------RTGLSAGKVDVYYYSPGGKKFRSKPQLARFLGDAIDLSTFDFRTGKINSLLLRKSRR-----------------------------QRGTQFDYSRGIRNDASLVPPIRQTASIFKQPVTVVR----------SQEGKV----RSDFKHGPPDKPKQLFWEKRLQGLQACDRDEEALQSFELPKSMRGVGPDVSQETLLRSIATALHMSAQPITGQTGSRSVLEKHPGIYINPDQPLVQALSVTDEDIRKQEEQVHQARKKLQDALAEL 256          
BLAST of methyl- binding transcription vs. nr
Match: gi|1101359658|ref|XP_018906110.1| (PREDICTED: methyl-CpG-binding domain protein 2 [Bemisia tabaci] >gi|1101359660|ref|XP_018906111.1| PREDICTED: methyl-CpG-binding domain protein 2 [Bemisia tabaci])

HSP 1 Score: 196.438 bits (498), Expect = 1.710e-57
Identity = 115/298 (38.59%), Postives = 159/298 (53.36%), Query Frame = 0
Query:   61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPD-EEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAALTG 357
            +R E + LPKGW REE  R          + G S   VDV YYSP GQ  +SKP+LA+ +G+   +  FDFQ+GK+N LL+R+      +      R                           +  D +LVPPIRQTASIFKQPVTVFK+          ++GK  S    + K    EKP+QLFWEKRL G+ A   D  E +  +LP     VGP V ++ VL S++T+LH+    I GQ   +   + +P+ + NP+QPL     I + DI+KQED+V+  R+KL +A+ AL+G
Sbjct:    6 KRFECSALPKGWQREEVVR----------KTGLSAGKVDVFYYSPDGQRFRSKPQLARCVGDSVQLGTFDFQTGKVNTLLVRSHKNKNKTAQFDYSRN--------------------------MRNDVSLVPPIRQTASIFKQPVTVFKM----------QEGKVKS----DFKHGPQEKPKQLFWEKRLEGLRACDVDGSELKTMELPKGLKAVGPYVNEETVLQSVATALHVSSVPITGQTGPRSTLDKNPAVYLNPDQPLAQALTIGEDDIKKQEDRVSSARKKLQDALLALSG 253          
BLAST of methyl- binding transcription vs. nr
Match: gi|1339074760|ref|XP_023724678.1| (methyl-CpG-binding domain protein 3 isoform X2 [Cryptotermes secundus] >gi|1330877222|gb|PNF15867.1| Methyl-CpG-binding domain protein 3 [Cryptotermes secundus])

HSP 1 Score: 194.897 bits (494), Expect = 8.338e-57
Identity = 116/294 (39.46%), Postives = 163/294 (55.44%), Query Frame = 0
Query:   61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKP-GPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPD-EEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAI 352
            ++ E + LPKGW REE  R          ++G S   VDV YYSP G+  +SKP+LA+ LG+  D+  FDF+SGKIN LLLR + K  G     S G ++                            DA+LVPPIRQTASIFKQPVTV+K           ++GK     +T+ K    EKP+QLFWEKRL G+ A   D  EF   +LP     VGP V ++ +L S++T+LH+    + GQ  S+   E +P  F NP+QPL+    ++ +DI++QE++V+  R+KL +A+
Sbjct:    6 KKYECSALPKGWQREEVTR----------KSGLSAGKVDVYYYSPNGKKFRSKPQLARYLGDALDLATFDFRSGKINSLLLRKNKKQRGTQFDYSRGVRN----------------------------DASLVPPIRQTASIFKQPVTVYK----------TQEGKV----KTDFKHGPQEKPKQLFWEKRLEGLRACDLDGLEFNGMELPRALRAVGPHVGEETLLQSVATALHVSTQPVTGQTGSRSALEKNPGVFLNPDQPLVQAVSVADEDIKRQEERVSVARKKLQDAL 247          
The following BLAST results are available for this feature:
BLAST of methyl- binding transcription vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000026779.182e-7142.47supercontig:LSalAtl2s:LSalAtl2s154:562822:564714:-... [more]
EMLSAG000000010976.334e-1040.51supercontig:LSalAtl2s:LSalAtl2s117:967131:967352:-... [more]
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BLAST of methyl- binding transcription vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
gi|50400820|sp|O95983.1|MBD3_HUMAN1.735e-4134.58RecName: Full=Methyl-CpG-binding domain protein 3;... [more]
gi|50401209|sp|Q9Z2D8.1|MBD3_MOUSE3.470e-4135.14RecName: Full=Methyl-CpG-binding domain protein 3;... [more]
gi|341940941|sp|Q9Z2E1.2|MBD2_MOUSE2.801e-4033.22RecName: Full=Methyl-CpG-binding domain protein 2;... [more]
gi|50401198|sp|Q9UBB5.1|MBD2_HUMAN6.255e-4034.12RecName: Full=Methyl-CpG-binding domain protein 2;... [more]
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BLAST of methyl- binding transcription vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|939278493|ref|XP_014259790.1|3.550e-6240.00methyl-CpG-binding domain protein 2 isoform X2 [Ci... [more]
gi|675381355|gb|KFM74257.1|3.994e-6240.88Methyl-CpG-binding domain protein 2, partial [Steg... [more]
gi|1009565899|ref|XP_015915414.1|5.119e-6241.36methyl-CpG-binding domain protein 2-like [Parastea... [more]
gi|939278491|ref|XP_014259789.1|4.771e-6139.67methyl-CpG-binding domain protein 2 isoform X1 [Ci... [more]
gi|939636846|ref|XP_014294369.1|2.767e-5940.61PREDICTED: methyl-CpG-binding domain protein 3 iso... [more]
gi|1228362560|ref|XP_021967669.1|2.777e-5939.66methyl-CpG-binding domain protein 2-like [Folsomia... [more]
gi|1316203510|ref|XP_023212088.1|9.163e-5941.02methyl-CpG-binding domain protein 2-like isoform X... [more]
gi|241616494|ref|XP_002407962.1|1.075e-5839.86methyl-CpG binding transcription regulator, putati... [more]
gi|1101359658|ref|XP_018906110.1|1.710e-5738.59PREDICTED: methyl-CpG-binding domain protein 2 [Be... [more]
gi|1339074760|ref|XP_023724678.1|8.338e-5739.46methyl-CpG-binding domain protein 3 isoform X2 [Cr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold17_size721972supercontigscaffold17_size721972:188311..191649 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:nucleus
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold17_size721972-snap-gene-2.9-mRNA-1maker-scaffold17_size721972-snap-gene-2.9-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold17_size721972:188311..191649+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold17_size721972-snap-gene-2.9 ID=maker-scaffold17_size721972-snap-gene-2.9|Name=methyl- binding transcription|organism=Tigriopus kingsejongensis|type=gene|length=3339bp|location=Sequence derived from alignment at scaffold17_size721972:188311..191649+ (Tigriopus kingsejongensis)
CGGCGTCAAAGATTCGTCTTCTGCGCAGAGCAAAACAATCAACACCCTCG ACGGCCCAGCCTCCTCCTTGCGGTCTTCGCGTGCGGTCTCGAGCCGTGCG GCGGGTCAGGCGTGAGCAGTGCCAGGATGGCTATGGATTTCAGTGCCTCG GTTTTGAGTGCGGTGGCGGCTGCGGGTTATCGACGCTCGGAAGTGGCCGG CTTGCCCAAGGGCTGGATCCGGGAGGAGAGTCCGCGCTTCCCGACTCACT TGCACAATGGCGGCTTTCAGAACGGGAGCAGCCAGACGCCGGTGGACGTG GTGTACTACTCGCCCCGTGGCCAGGTCATCAAGTCCAAGCCCGAGCTGGC CAAGGCCCTGGGCGAGCACTACGACGTGACGGCCTTCGACTTCCAGAGCG GCAAGATCAACCCGCTGCTTTTGCGCACCTCGGCCAAGCCGGGACCGTCG GTTTCGGGCTCGGCTGGGCGCAAAAGCTCCAAGCCCGTTTCGACCTCGGC CGGTTTGGCCGCTGCGGCGGCTGCGGCCAACGGCACGAATGCGGCTACGG CACTGGCCCGGGATGCGGCTCTGGTGCCACCCATTCGTCAGACCGCGTCC ATCTTCAAGCAACCCGTCACCGTCTTCAAGATCAGCGCTGAGCTGGTGAG TGATCCCTGAAGTTACGGGCCTCGAGAGCCGTGGTAGCTGGTGACCCCGG ATGTCTCGGACGACATGGATTTATGACTCGGCTAGACTGAAATCATGGAT GCTTGGTGGGCAGCATTGTCGGGGTATTTGGATTTTTATTTATGGGACTC GGGATTGGGGTGCAGTTTCCCGGCTTGGGTAGCCACTTGAGCGAAAAGGT GGATTGGTAAGAGATTGGTGCCTTACTCTGAGGCAATCTCTGACCGCTAA TTATGGCCCAAATCAATGTCCAATTTTTGGCTCACCTATTCTGGCGATAT CCGTGCCACAAACGCCATCCAATTGGGCAGTTACATCCTCATTTCTCAGT TCGGGTTCATCCCAGTCTATCGAATATGGACTAACACGAACGAAAGCATC CCGAATAGTCGGGCAATGCCGTGAATAGGCCACTGACTGACAGTCTCCCG ATGGTATTGCATAGATTACCAAGTACCGTAGTCGAAGGGCACGTTTTTCT TTGGTCTGAGATATTGCATATCTTGGCCAACCTGCCATAGTATAAAGAGC AAATAACCGCCTAGATTGGTCCGCAATTCATCGGCTGTGTAGCGATTATC AGAACTTGGATTGGATCACTTGAGCTCGGGGATGGGGCGAAAGCAGAAGT GACTCTTGTCAGCTGATTAGTTTAGAGCATCATAACTGATAGGTCATTCA AGTACTAGCTAGTATCTAGTCAATCTCGATATTTTCACCCGGGTGACCCG GGGCAAGGCGGGTAAATTTGATACAGGTAAATCTTGGGCGGATTTTGTTC AGGCCCAACTCTAAGCCACTTAGGCGAATGGCTAAATAGGCTCATTGCCG GTACCAATGTCCGTTCAAGGCTCGCCGGGCATCCCCTGAAAGGCCACTCC ATAGTGATAAAGACCTAGGGACTTTACCTAGCCGCAGCTTGCTTAACACT GCCAAGTAGAGTACCTACATATTACCTCCTAATATAGGGATTTCACTGCC TAACAGTAAGCTAGGATAGTACGAGGAGCTCCACATAAGAACTGGATGAA GCGGAAGCTTCAAGCATATGCGTTCTAAGGCCGAGAGGCTGGGCCAATTC GGCCTGCCTTGATTGGCTCAGTCAGCCTAAGGCGGTCTAGCCGCCAATGC GTGCCAAGGGCTCTCAAACTTTGATCCAGCCAGTCCGAATGGGCCATGCG TGTCGGCTCTGCCTCAGAACGCATATTCTTGAAGTCACGTGACCATTTGG GGCAGTTTCCGCTCCATCTAGTTCTTATGTAGAACTCCTTGCCCGGGGAC GCCTCCGATACAAAGCTTCTTTCGATAGCTAGACGGACCTCTCGATCCCG AAAGCTTAGGCCCAGTGGTTGTGTCCTGGTCAGATCCCAAGGTCCATTGA ATGTTAGGGGTCATAATTGTTCACGTTCTGGGTGAGGGATCTTCAGAGGT GCTCATCACAATTTATCAAGTGGAAAAGTTAGACCAATGGCCAAGGTCGG GCGACGATGGTTCGAGAATTCGTAGTGGGTTGAGCTATTAATCATTTGTC CCTGATTAATCGTCAGGCATACAGTTCGGATACAATGAAGGGCCCACCCA TATATAAAGAAAATTGTCCCCGAGAATTTGCATGGAGCCAAATAATCCGT CTAGTTTCCCAACTACAATTGAGCTATTCACGACTACTTCACCCCTGATT TATGGTCCTGGTACTGTGGACCACCTCTTAACTCCATGGTTCTGACTGAT CCCTCGCTACCATGGTGGCCTCAAATCGAGCTGCCCCAATTCCCTCAAAA AGCCATGTAGAGTGTGATCAACCAATAGTCGAACCTAATTCAATTCTAGC CCAAGGTTGACGAGAATGAGGACGGCAAGACTGCCAGCAAACAGCGCACC GAGTCCAAGTCCTCCAATGTGGAGAAACCTCGGCAACTCTTCTGGGAGAA ACGACTGTCTGGCATGGCAGCCTCTTACCCGGATGAGGAATTCGAACCGT TCAAACTGCCGCCCAACTTTGCCCCCGTCGGCCCCGGAGTGACGGACGAC ATCGTTTTGGCCTCCATATCCACATCCCTCCACATGGGTGGTGGCGCTAT CAATGGACAGAAAGACAGCAAGGTACAACGGAAATACTCCCAGTTCATCG GAACACAATAATGCAATACGCAATCCTATGACTTTCAGCACATGAAGGAG AACGATCCGAGCGCCTTTTGCAACCCCGAACAACCTTTGATAGGTACGAC CAAAATCAGCCAGCAAGACATCGAGAAGCAAGAGGACCAAGTGAACGAGA CCAGGAGAAAGCTCGCCGAAGCCATCGCGGCTCTAACAGGGTGAGCTGGT CCGGTTGACCACCATGATCTCGGGTGTGTTGTATGTCATACGTATGTTGT TCCAAAAAATATTCCGTCTCCACCAACACCACCACCAAACCTCAGGCTAT CTCACTAAAGCCTAGGCTTACCCCCCAACGTATTTCCCCCCCCCCCCCTT CAGCTACGTTACGTCGTATAAGCGTACTGCAACCACATGCCTACTGGCAA CATCCACTAGTGTGCTGGCGGCGACTAAATATCCTCTCAAGTATTTTGCT TTAGTTCTGCAGGGACTAACTGTACATATATAACAATAGGCAGAGCAATG AATATTTTATGTGCTCTTGATTGAAATAAAAATCGATTT
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Synonyms
The feature 'methyl- binding transcription' has the following synonyms
Synonym
Tk09963
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