methyl- binding transcription, maker-scaffold17_size721972-snap-gene-2.9 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of methyl- binding transcription vs. L. salmonis genes
Match: EMLSAG00000002677 (supercontig:LSalAtl2s:LSalAtl2s154:562822:564714:-1 gene:EMLSAG00000002677 transcript:EMLSAT00000002677 description:"maker-LSalAtl2s154-augustus-gene-5.11") HSP 1 Score: 221.861 bits (564), Expect = 9.182e-71 Identity = 127/299 (42.47%), Postives = 164/299 (54.85%), Query Frame = 0 Query: 59 GYRRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPDEEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSK-HMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAALT 356 G RR EV+ LP+GW REE R DV Y SP G ++++ EL K LGEHYD+TAFD+ SGKI L ++ S + + + S A + L DA+LVPPIRQTASIFKQPVT KPRQLFWEKRLSG+ ASYPDE++EPF LP N VGPGV +DIVLASI+T LHMG G+ NGQ ++K + E +P + +P+QPLIG ++ D+EKQE++V+ R+ L EA+ +LT Sbjct: 19 GVRRVEVSTLPRGWCREEISR---------------GNRTDVHYISPLGVRVRNRNELGKVLGEHYDLTAFDYSSGKI---LSSSNNISSSSSNNNNANTNHTHSQHSISARNPQKRAKTYDFTKTLKNDASLVPPIRQTASIFKQPVTXXXXXXXX---------XXXXXXXXXXXXXXXXKPRQLFWEKRLSGLRASYPDEDYEPFSLPSNITAVGPGVNNDIVLASIATVLHMGNGSXNGQSNNKVNNFEKNPGVYVDPDQPLIGGXSVTXADVEKQEERVDAARKALEEALESLT 290
BLAST of methyl- binding transcription vs. L. salmonis genes
Match: EMLSAG00000001097 (supercontig:LSalAtl2s:LSalAtl2s117:967131:967352:-1 gene:EMLSAG00000001097 transcript:EMLSAT00000001097 description:"augustus-LSalAtl2s117-processed-gene-9.3") HSP 1 Score: 53.9138 bits (128), Expect = 6.334e-10 Identity = 32/79 (40.51%), Postives = 42/79 (53.16%), Query Frame = 0 Query: 59 GYRRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKIN 137 G RR EV+ LP+ W REE R G + G V Y +P G ++++ EL K L EHYD+TA D S KI+ Sbjct: 6 GVRRDEVSNLPRRWCREEISR--------GNRTG-------VYYIAPTGVRVRNRNELGKVLAEHYDLTASDHFSEKIH 69
BLAST of methyl- binding transcription vs. SwissProt
Match: gi|50400820|sp|O95983.1|MBD3_HUMAN (RecName: Full=Methyl-CpG-binding domain protein 3; AltName: Full=Methyl-CpG-binding protein MBD3) HSP 1 Score: 149.828 bits (377), Expect = 1.735e-41 Identity = 102/295 (34.58%), Postives = 148/295 (50.17%), Query Frame = 0 Query: 61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAA-SYPDEEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAA 354 +R E LP+GW REE PR ++G S DV YYSP G+ +SKP+LA+ LG D++ FDF++GK+ L+ + + S+ + KP + TAL P+RQTASIFKQPVT K+ + K S V++PRQLFWEK+LSG+ A +E + LP VGPG TD+ +L++I+++LH I GQ + E +P + N QPL ++ +DI KQE+ V + R++L EA+ A Sbjct: 4 KRWECPALPQGWEREEVPR----------RSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGKM--LMSKMNKSRQRVRYDSSNQVKGKP-----------------DLNTAL--------PVRQTASIFKQPVT---------KITNHPSNKVKS-----DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASALHTSTMPITGQLSAA--VEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALMA 245
BLAST of methyl- binding transcription vs. SwissProt
Match: gi|50401209|sp|Q9Z2D8.1|MBD3_MOUSE (RecName: Full=Methyl-CpG-binding domain protein 3; AltName: Full=Methyl-CpG-binding protein MBD3) HSP 1 Score: 148.673 bits (374), Expect = 3.470e-41 Identity = 104/296 (35.14%), Postives = 147/296 (49.66%), Query Frame = 0 Query: 61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVS-GSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAA-SYPDEEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAA 354 +R E LP+GW REE PR ++G S DV YYSP G+ +SKP+LA+ LG D++ FDF++GK +L+ K V S+ + KP + TAL P+RQTASIFKQPVT K+ + K S V++PRQLFWEK+LSG++A +E LP VGPG TD+ +L++I+++LH I GQ + E +P + N QPL ++ DI KQE+ V + R++L EA+ A Sbjct: 4 KRWECPALPQGWEREEVPR----------RSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGK---MLMNKMNKSRQRVRYDSSNQVKGKP-----------------DLNTAL--------PVRQTASIFKQPVT---------KITNHPSNKVKS-----DPQKAVDQPRQLFWEKKLSGLSAFDIAEELVRTMDLPKGLQGVGPGCTDETLLSAIASALHTSTLPITGQLSAA--VEKNPGVWLNTAQPLCKAFMVTDDDIRKQEELVQQVRKRLEEALMA 245
BLAST of methyl- binding transcription vs. SwissProt
Match: gi|341940941|sp|Q9Z2E1.2|MBD2_MOUSE (RecName: Full=Methyl-CpG-binding domain protein 2; AltName: Full=Methyl-CpG-binding protein MBD2) HSP 1 Score: 149.828 bits (377), Expect = 2.801e-40 Identity = 98/295 (33.22%), Postives = 152/295 (51.53%), Query Frame = 0 Query: 61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPDEE-FEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAA 354 +R + LP GW +EE + G G S DV Y+SP G+ +SKP+LA+ LG D+++FDF++GK+ P L+ + + R + P++ + G D PIRQTASIFKQPVT F ++K +++ + N E+PRQLFWEKRL G++AS E+ + +LP VGPG D+ +L++++++LH I GQ + E +P+ + N QPL ++ +DI KQE++V + R+KL EA+ A Sbjct: 151 KRMDCPALPPGWKKEEV------IRKSGLSAGKS----DVYYFSPSGKKFRSKPQLARYLGNAVDLSSFDFRTGKMMPSKLQKNKQ----------RLRNDPLNQNKGKP-----------------DLNTTLPIRQTASIFKQPVTKFT-------------NHPSNKVKSDPQRMN-EQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHTSSAPITGQVSA--AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEALMA 392
BLAST of methyl- binding transcription vs. SwissProt
Match: gi|50401198|sp|Q9UBB5.1|MBD2_HUMAN (RecName: Full=Methyl-CpG-binding domain protein 2; AltName: Full=Demethylase; Short=DMTase; AltName: Full=Methyl-CpG-binding protein MBD2) HSP 1 Score: 148.673 bits (374), Expect = 6.255e-40 Identity = 101/296 (34.12%), Postives = 150/296 (50.68%), Query Frame = 0 Query: 61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASK-QRTESKSSNVEKPRQLFWEKRLSGMAASYPDEE-FEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAA 354 +R + LP GW +EE + G G S DV Y+SP G+ +SKP+LA+ LG D+++FDF++GK+ P L+ + + R + P++ + G D PIRQTASIFKQPVT KV + K S QR E+PRQLFWEKRL G++AS E+ + +LP VGPG D+ +L++++++LH I GQ + E +P+ + N QPL ++ +DI KQE++V + R+KL EA+ A Sbjct: 148 KRMDCPALPPGWKKEEV------IRKSGLSAGKS----DVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQKNKQ----------RLRNDPLNQNKGKP-----------------DLNTTLPIRQTASIFKQPVT---------KVTNHPSNKVKSDPQRMN------EQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHTSSAPITGQVSA--AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEALMA 389
BLAST of methyl- binding transcription vs. nr
Match: gi|939278493|ref|XP_014259790.1| (methyl-CpG-binding domain protein 2 isoform X2 [Cimex lectularius]) HSP 1 Score: 208.764 bits (530), Expect = 3.550e-62 Identity = 122/305 (40.00%), Postives = 171/305 (56.07%), Query Frame = 0 Query: 55 VAAAGYRRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKIN-PLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPD-EEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAALTG 357 ++A +R + LPKGW REE R ++G S VDV YYSP GQ +SKP+L +A+ + D+TAFDF +GK N LL+R KP AN + + + DA+LVPPIRQTASIFKQPVT+++ ++GKT S+ K N EKP+QLFWEKRL G+ AS D E + +LP N VGP V D+ +L S++T+LH+ G I GQ +K E +P + NPEQPL+ I+++DI++QE++VN R++L +A+ L G Sbjct: 1 MSALEKKRYDCTALPKGWQREEITR----------KSGLSAGKVDVCYYSPEGQKFESKPQLVRAISDTVDLTAFDFSTGKCNNSLLVRRHKKP---------------------------RANQFDYSRGMRNDASLVPPIRQTASIFKQPVTLYR----------TQEGKTKSEF---GKHGNQEKPKQLFWEKRLEGLRASDIDGSELKGMELPRNLKSVGPNVNDETLLQSMATALHVLGQPITGQLGAKASLEKNPGVYLNPEQPLVQAVSITEEDIKRQEERVNLARKRLEDAMKELEG 255
BLAST of methyl- binding transcription vs. nr
Match: gi|675381355|gb|KFM74257.1| (Methyl-CpG-binding domain protein 2, partial [Stegodyphus mimosarum]) HSP 1 Score: 208.379 bits (529), Expect = 3.994e-62 Identity = 121/296 (40.88%), Postives = 169/296 (57.09%), Query Frame = 0 Query: 63 SEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGT--NAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPDEE-FEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAAL 355 ++ LPKGW REE R +NG S +DV YYSP G+ +SKP+LA+ LG+ D++ FD+++GKIN LLLR S + GT + + DA+LVPPIRQTASIFKQPVTV + + DGK RT+ K +KP+QLFWEKRL G+ AS DEE F F+LP N VGP +T++ +L SI+T+LH+ G I GQ +S+ + + +PS + NPEQPL+ ++++DI+KQE++V R+KL E + L Sbjct: 4 TDCPALPKGWKREEIIR----------KNGLSSGKIDVFYYSPSGKRFRSKPQLARFLGDAVDLSTFDYRTGKINSLLLRKSKR-----------------------------QRGTQFDYNRGIRNDASLVPPIRQTASIFKQPVTVIR----------STDGKV----RTDFKHGPQDKPKQLFWEKRLQGLKASDMDEEAFNNFELPRNMKGVGPDLTEETLLRSIATALHVSGQPIVGQTNSRVVLDKNPSVYINPEQPLVQALVVTEEDIKKQEEKVQLARKKLQECLKEL 246
BLAST of methyl- binding transcription vs. nr
Match: gi|1009565899|ref|XP_015915414.1| (methyl-CpG-binding domain protein 2-like [Parasteatoda tepidariorum] >gi|1009565902|ref|XP_015915415.1| methyl-CpG-binding domain protein 2-like [Parasteatoda tepidariorum]) HSP 1 Score: 207.994 bits (528), Expect = 5.119e-62 Identity = 122/295 (41.36%), Postives = 168/295 (56.95%), Query Frame = 0 Query: 64 EVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGT--NAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPDEE-FEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAAL 355 E LPKGW REE R +NG S +DV YYSP G+ +SKP+LA+ LG+ D++ FD+++GKIN LLLR S + GT + + DA+LVPPIRQTASIFKQPVTV K + DGK R++ K +KP+QLFWEKRL G+ AS DEE F F+LP N VGP +T++ +L SI+T+LH+ G I GQ +S+ + + +PS + NPEQPL+ ++++DI+KQE++V R+KL E + L Sbjct: 5 ECPALPKGWKREEIIR----------KNGLSSGKIDVYYYSPSGKRFRSKPQLARYLGDAVDLSTFDYRTGKINSLLLRKSKR-----------------------------QRGTQFDYNRGIRNDASLVPPIRQTASIFKQPVTVVK----------STDGKV----RSDFKHGPQDKPKQLFWEKRLQGLKASDMDEEAFNNFELPKNMKGVGPDLTEETLLRSIATALHVSGQPIVGQTNSRVVLDKNPSVYINPEQPLVQAIVVTEEDIKKQEEKVLLARKKLQECLKEL 246
BLAST of methyl- binding transcription vs. nr
Match: gi|939278491|ref|XP_014259789.1| (methyl-CpG-binding domain protein 2 isoform X1 [Cimex lectularius]) HSP 1 Score: 205.682 bits (522), Expect = 4.771e-61 Identity = 121/305 (39.67%), Postives = 170/305 (55.74%), Query Frame = 0 Query: 55 VAAAGYRRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKIN-PLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPD-EEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAALTG 357 ++A +R + LPKGW REE R ++G S VDV YYSP GQ +SKP+L +A+ + D+TAFDF +GK N LL+R KP A ++ + DA+LVPPIRQTASIFKQPVT+++ ++GKT S+ K N EKP+QLFWEKRL G+ AS D E + +LP N VGP V D+ +L S++T+LH+ G I GQ +K E +P + NPEQPL+ I+++DI++QE++VN R++L +A+ L G Sbjct: 1 MSALEKKRYDCTALPKGWQREEITR----------KSGLSAGKVDVCYYSPEGQKFESKPQLVRAISDTVDLTAFDFSTGKCNNSLLVRRHKKP--------------------------RANQFDYSSRGMRNDASLVPPIRQTASIFKQPVTLYR----------TQEGKTKSEF---GKHGNQEKPKQLFWEKRLEGLRASDIDGSELKGMELPRNLKSVGPNVNDETLLQSMATALHVLGQPITGQLGAKASLEKNPGVYLNPEQPLVQAVSITEEDIKRQEERVNLARKRLEDAMKELEG 256
BLAST of methyl- binding transcription vs. nr
Match: gi|939636846|ref|XP_014294369.1| (PREDICTED: methyl-CpG-binding domain protein 3 isoform X2 [Halyomorpha halys]) HSP 1 Score: 201.06 bits (510), Expect = 2.767e-59 Identity = 119/293 (40.61%), Postives = 160/293 (54.61%), Query Frame = 0 Query: 61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPD-EEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAI 352 +R E + LPKGW REE R + G S VDV YYSP GQ SKP+L +A+ + D+T FDF +GK N LL R KP S + + + DA+LVPPIRQTASIFKQPVTV++ ++GK + + K EKP+QLFWEKRL G+ AS EP +LP + P GPGVTD+ +L S++T+LH+ G I GQ + K + +P+ F NP+QPLI IS DI++QE++VN R++L EA+ Sbjct: 6 KRFECSALPKGWQREEVIR----------KTGLSAGKVDVCYYSPDGQKYDSKPQLVRAISDSIDLTTFDFSTGKCNTLLARRHKKPRTS---------------------------QFDYSRGVRNDASLVPPIRQTASIFKQPVTVYR----------TQEGKV----KADFKHGPQEKPKQLFWEKRLEGLRASDAHGNPLEPMELPRSLRPAGPGVTDETLLQSVATALHVLGQPITGQTNMKPGSDKNPAVFINPDQPLIQAVSISDDDIKRQEERVNLARKRLQEAM 247
BLAST of methyl- binding transcription vs. nr
Match: gi|1228362560|ref|XP_021967669.1| (methyl-CpG-binding domain protein 2-like [Folsomia candida] >gi|1215278390|gb|OXA64699.1| Methyl-CpG-binding domain protein 2 [Folsomia candida]) HSP 1 Score: 201.445 bits (511), Expect = 2.777e-59 Identity = 115/290 (39.66%), Postives = 160/290 (55.17%), Query Frame = 0 Query: 67 GLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPD-EEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAAL 355 LPKGWIREE R + G S VDVVYYSP + KSKP+L++ LG+ +D+ FDFQ+GK+N LL++ + RK P+ + G+ + D+ L+PPIRQTASIFKQPVT+ K + K D K + +KP+Q+FWEKRL G+ A D EE E LP P+GP VT D VL S++T+LH+ G I GQ ++ +N+P + NPEQPLI ++++DI QE++V R++L EAI +L Sbjct: 17 ALPKGWIREEIIR----------KTGLSAGKVDVVYYSPNQKKFKSKPQLSRYLGDSFDLAGFDFQTGKVNSLLIK-----------NRNRKPKVPIDYNRGVRS----------------DSTLLPPIRQTASIFKQPVTIIKTQKSMVKQD--------------FKHGHQDKPKQVFWEKRLEGLKACDADGEELESLTLPKGVEPMGPHVTADTVLQSVATALHVNGQPITGQTSNRTNLDNNPGVYINPEQPLIQAIVVAEEDIRSQEERVLVARKRLEEAIRSL 255
BLAST of methyl- binding transcription vs. nr
Match: gi|1316203510|ref|XP_023212088.1| (methyl-CpG-binding domain protein 2-like isoform X2 [Centruroides sculpturatus]) HSP 1 Score: 199.519 bits (506), Expect = 9.163e-59 Identity = 121/295 (41.02%), Postives = 161/295 (54.58%), Query Frame = 0 Query: 64 EVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKP-GPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPDEE-FEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAALT 356 E LPKGW REE R + G S +DV YYSP G+ +SKP+LA+ LG+ D++ FDF++GKIN +LLR S + G S G + D +LVPPIRQTASIFKQPVTV K S E SK RT+ K EKP+QLFWEKRL G+ A +EE F+ F LP N VGP +T++ +L SI+T+LH+ I GQ SK E +P NP+QPL+ ++ DI KQE++V++ R+KL EA+ ++ Sbjct: 2 ECPALPKGWKREEVIR----------RTGLSAGKIDVYYYSPTGKKFRSKPQLARYLGDTVDLSTFDFRTGKINSMLLRKSKRQRGAQFDYSRG----------------------------IRNDTSLVPPIRQTASIFKQPVTVVK-SQE-------------SKVRTDFKHGPQEKPKQLFWEKRLQGLKACDVNEEAFQSFDLPKNMRGVGPDLTEETLLRSIATALHVSAQPITGQTGSKSGLEKNPGVHINPDQPLVQALVVTDDDIRKQEEKVHQARKKLEEALIEIS 244
BLAST of methyl- binding transcription vs. nr
Match: gi|241616494|ref|XP_002407962.1| (methyl-CpG binding transcription regulator, putative [Ixodes scapularis] >gi|215502882|gb|EEC12376.1| methyl-CpG binding transcription regulator, putative [Ixodes scapularis]) HSP 1 Score: 199.904 bits (507), Expect = 1.075e-58 Identity = 118/296 (39.86%), Postives = 166/296 (56.08%), Query Frame = 0 Query: 63 SEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGT--NAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPDEE-FEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAAL 355 ++ LPKGW REE R + G S VDV YYSP G+ +SKP+LA+ LG+ D++ FDF++GKIN LLLR S + GT + + + DA+LVPPIRQTASIFKQPVTV + +++GK R++ K +KP+QLFWEKRL G+ A DEE + F+LP + VGP V+ + +L SI+T+LHM I GQ S+ + E P + NP+QPL+ ++ +DI KQE+QV++ R+KL +A+A L Sbjct: 14 TDCPALPKGWKREEVIR----------RTGLSAGKVDVYYYSPGGKKFRSKPQLARFLGDAIDLSTFDFRTGKINSLLLRKSRR-----------------------------QRGTQFDYSRGIRNDASLVPPIRQTASIFKQPVTVVR----------SQEGKV----RSDFKHGPPDKPKQLFWEKRLQGLQACDRDEEALQSFELPKSMRGVGPDVSQETLLRSIATALHMSAQPITGQTGSRSVLEKHPGIYINPDQPLVQALSVTDEDIRKQEEQVHQARKKLQDALAEL 256
BLAST of methyl- binding transcription vs. nr
Match: gi|1101359658|ref|XP_018906110.1| (PREDICTED: methyl-CpG-binding domain protein 2 [Bemisia tabaci] >gi|1101359660|ref|XP_018906111.1| PREDICTED: methyl-CpG-binding domain protein 2 [Bemisia tabaci]) HSP 1 Score: 196.438 bits (498), Expect = 1.710e-57 Identity = 115/298 (38.59%), Postives = 159/298 (53.36%), Query Frame = 0 Query: 61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPD-EEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAIAALTG 357 +R E + LPKGW REE R + G S VDV YYSP GQ +SKP+LA+ +G+ + FDFQ+GK+N LL+R+ + R + D +LVPPIRQTASIFKQPVTVFK+ ++GK S + K EKP+QLFWEKRL G+ A D E + +LP VGP V ++ VL S++T+LH+ I GQ + + +P+ + NP+QPL I + DI+KQED+V+ R+KL +A+ AL+G Sbjct: 6 KRFECSALPKGWQREEVVR----------KTGLSAGKVDVFYYSPDGQRFRSKPQLARCVGDSVQLGTFDFQTGKVNTLLVRSHKNKNKTAQFDYSRN--------------------------MRNDVSLVPPIRQTASIFKQPVTVFKM----------QEGKVKS----DFKHGPQEKPKQLFWEKRLEGLRACDVDGSELKTMELPKGLKAVGPYVNEETVLQSVATALHVSSVPITGQTGPRSTLDKNPAVYLNPDQPLAQALTIGEDDIKKQEDRVSSARKKLQDALLALSG 253
BLAST of methyl- binding transcription vs. nr
Match: gi|1339074760|ref|XP_023724678.1| (methyl-CpG-binding domain protein 3 isoform X2 [Cryptotermes secundus] >gi|1330877222|gb|PNF15867.1| Methyl-CpG-binding domain protein 3 [Cryptotermes secundus]) HSP 1 Score: 194.897 bits (494), Expect = 8.338e-57 Identity = 116/294 (39.46%), Postives = 163/294 (55.44%), Query Frame = 0 Query: 61 RRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKP-GPSVSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTASIFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKRLSGMAASYPD-EEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAINGQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAEAI 352 ++ E + LPKGW REE R ++G S VDV YYSP G+ +SKP+LA+ LG+ D+ FDF+SGKIN LLLR + K G S G ++ DA+LVPPIRQTASIFKQPVTV+K ++GK +T+ K EKP+QLFWEKRL G+ A D EF +LP VGP V ++ +L S++T+LH+ + GQ S+ E +P F NP+QPL+ ++ +DI++QE++V+ R+KL +A+ Sbjct: 6 KKYECSALPKGWQREEVTR----------KSGLSAGKVDVYYYSPNGKKFRSKPQLARYLGDALDLATFDFRSGKINSLLLRKNKKQRGTQFDYSRGVRN----------------------------DASLVPPIRQTASIFKQPVTVYK----------TQEGKV----KTDFKHGPQEKPKQLFWEKRLEGLRACDLDGLEFNGMELPRALRAVGPHVGEETLLQSVATALHVSTQPVTGQTGSRSALEKNPGVFLNPDQPLVQAVSVADEDIKRQEERVSVARKKLQDAL 247 The following BLAST results are available for this feature:
BLAST of methyl- binding transcription vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of methyl- binding transcription vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 4
BLAST of methyl- binding transcription vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold17_size721972:188311..191649+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold17_size721972-snap-gene-2.9 ID=maker-scaffold17_size721972-snap-gene-2.9|Name=methyl- binding transcription|organism=Tigriopus kingsejongensis|type=gene|length=3339bp|location=Sequence derived from alignment at scaffold17_size721972:188311..191649+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'methyl- binding transcription' has the following synonyms
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