Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
1-phosphatidylinositol -bisphosphate phosphodiesterase isoform x2snap_masked-scaffold645_size120276-processed-gene-0.13gene
1-pyrroline-5-carboxylate dehydrogenasemaker-scaffold701_size109406-snap-gene-0.1gene
1-pyrroline-5-carboxylate dehydrogenasemaker-scaffold8184_size2827-snap-gene-0.0gene
1-pyrroline-5-carboxylate partialmaker-scaffold8184_size2827-snap-gene-0.1gene
1 transposasemaker-scaffold906_size82779-snap-gene-0.13gene
2maker-scaffold25_size650667-snap-gene-1.19gene
2204375f vsaa genemaker-scaffold206_size259025-snap-gene-1.21gene
23s rrna methyltransferasesnap_masked-scaffold11488_size2010-processed-gene-0.1gene
24-dehydrocholesterol reductasemaker-scaffold134_size322110-snap-gene-2.25gene
24-dehydrocholesterol reductasemaker-scaffold51_size454968-snap-gene-3.27gene
24-dehydrocholesterol reductasemaker-scaffold845_size89356-snap-gene-0.16gene
250 kda substrate of aktmaker-scaffold1916_size24942-snap-gene-0.4gene
250 kda substrate of aktsnap_masked-scaffold198_size266703-processed-gene-0.0gene
2 -5 -oligoadenylate synthase 3-likesnap_masked-scaffold658_size117954-processed-gene-0.13gene
26kda proteasemaker-scaffold1728_size29846-snap-gene-0.5gene
26s protease regulatory subunit 4snap_masked-scaffold9_size846264-processed-gene-0.7gene
26s protease regulatory subunit s10bsnap_masked-scaffold487_size158652-processed-gene-0.16gene
26s protease regulatory subunit s10bsnap_masked-scaffold919_size81109-processed-gene-0.13gene
26s proteasome complex subunit dss1-likemaker-scaffold1518_size37722-snap-gene-0.18gene
26s proteasome non-atpase regulatorysnap_masked-scaffold795_size96016-processed-gene-0.7gene
26s proteasome non-atpase regulatory subunit 1snap_masked-scaffold606_size125303-processed-gene-0.14gene
26s proteasome non-atpase regulatory subunit 10maker-scaffold320_size207635-snap-gene-0.10gene
26s proteasome non-atpase regulatory subunit 11maker-scaffold514_size150699-snap-gene-0.25gene
26s proteasome non-atpase regulatory subunit 13maker-scaffold269_size230758-snap-gene-0.22gene
26s proteasome non-atpase regulatory subunit 14maker-scaffold214_size254108-snap-gene-0.13gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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