Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
conserved hypothetical proteinsnap_masked-scaffold347_size200506-processed-gene-0.1gene
conserved hypothetical proteinsnap_masked-scaffold374_size191929-processed-gene-0.12gene
conserved hypothetical proteinsnap_masked-scaffold428_size174301-processed-gene-0.2gene
conserved hypothetical proteinsnap_masked-scaffold474_size162001-processed-gene-0.12gene
conserved hypothetical proteinsnap_masked-scaffold488_size158317-processed-gene-0.2gene
conserved hypothetical proteinsnap_masked-scaffold55_size446313-processed-gene-3.1gene
conserved hypothetical proteinsnap_masked-scaffold632_size121914-processed-gene-0.11gene
conserved hypothetical proteinsnap_masked-scaffold662_size116868-processed-gene-0.8gene
conserved hypothetical proteinsnap_masked-scaffold794_size96255-processed-gene-0.13gene
conserved hypothetical proteinsnap_masked-scaffold825_size91437-processed-gene-0.5gene
conserved hypothetical proteinsnap_masked-scaffold82_size396747-processed-gene-2.21gene
conserved hypothetical proteinsnap_masked-scaffold84_size396325-processed-gene-2.16gene
conserved hypothetical proteinsnap_masked-scaffold871_size86487-processed-gene-0.14gene
conserved hypothetical proteinsnap_masked-scaffold906_size82779-processed-gene-0.4gene
conserved hypothetical proteinsnap_masked-scaffold934_size79169-processed-gene-0.12gene
conserved hypothetical proteinsnap_masked-scaffold9_size846264-processed-gene-3.0gene
conserved oligomeric golgi complex subunit 2maker-scaffold158_size296719-snap-gene-1.20gene
conserved oligomeric golgi complex subunit 4maker-scaffold119_size336447-snap-gene-1.16gene
conserved oligomeric golgi complex subunit 7maker-scaffold140_size315649-snap-gene-2.23gene
conserved Plasmodium protein maker-scaffold882_size85172-snap-gene-0.11gene
conserved unknown proteinmaker-scaffold246_size239296-snap-gene-1.34gene
conserved unknown proteinmaker-scaffold530_size145801-snap-gene-0.16gene
constitutive coactivator of ppar-gamma-like protein 1-like proteinmaker-scaffold195_size270011-snap-gene-1.20gene
contactin-1 isoform x1maker-scaffold17_size721972-snap-gene-1.19gene
cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_amaker-scaffold170_size291898-snap-gene-0.17gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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