Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
52 kda repressor of the inhibitor of the protein kinase-like isoform x2maker-scaffold20_size707684-snap-gene-3.12gene
5 -3 exoribonuclease 1maker-scaffold1137_size60140-snap-gene-0.17gene
5-aminolevulinate mitochondrialmaker-scaffold632_size121914-snap-gene-0.22gene
5-aminolevulinate synthasemaker-scaffold218_size252335-snap-gene-1.3gene
5-aminolevulinate synthasesnap_masked-scaffold1324_size47838-processed-gene-0.7gene
5-aminolevulinate synthasesnap_masked-scaffold5022_size5103-processed-gene-0.0gene
5-aminolevulinate synthasesnap_masked-scaffold8682_size2643-processed-gene-0.1gene
5 -amp-activated protein kinase subunit beta-1maker-scaffold510_size151595-snap-gene-0.36gene
5-amp-activated protein kinase subunit beta-1snap_masked-scaffold281_size224178-processed-gene-1.14gene
5 -amp-activated protein kinase subunit gamma-2maker-scaffold105_size367834-snap-gene-2.39gene
5-carboxymethyl-2-hydroxymuconate isomerasesnap_masked-scaffold4473_size5879-processed-gene-0.1gene
5-formyltetrahydrofolate cyclo-ligase-likemaker-scaffold23_size669530-snap-gene-1.26gene
5-hydroxyisourate hydrolasesnap_masked-scaffold10235_size2236-processed-gene-0.1gene
5-hydroxytryptamine receptor 6maker-scaffold87_size395581-snap-gene-2.15gene
5-methyltetrahydrofolate--homocysteine methyltransferasemaker-scaffold16_size723419-snap-gene-2.1gene
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferasemaker-scaffold1635_size32709-snap-gene-0.13gene
5 -nucleotidasemaker-scaffold791_size96783-snap-gene-0.28gene
5-oxoprolinasemaker-scaffold168_size293125-snap-gene-1.79gene
5-oxoprolinasemaker-scaffold336_size202805-snap-gene-0.21gene
5-oxoprolinasesnap_masked-scaffold10814_size2126-processed-gene-0.0gene
5-oxoprolinasesnap_masked-scaffold35_size523699-processed-gene-1.18gene
5-oxoprolinasesnap_masked-scaffold5766_size4353-processed-gene-0.1gene
5-oxoprolinase (atp-hydrolyzing)snap_masked-scaffold1338_size46646-processed-gene-0.12gene
5-phosphohydroxy-l-lysine phospho-lyasemaker-scaffold342_size201858-snap-gene-1.16gene
60s ribosomal export protein nmd3maker-scaffold476_size161517-snap-gene-0.33gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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